Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020832

Physical Location & Seq

Genomic Coordinates Reverse (-)

54608309 .. 54608843

Gene Structure 535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26154

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGATACCGCCAGCAACGAAATCCCAACGAGGAGGAGCACAAGTAGAAGAAGCACTGGGTCATTGGGAAGGTGTTTGAAAGAGCAGAGGGGAAGGCTTTACATCATGTGGAGATGCACTGTCATGCTTGTGAAGATGGAGAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DVL

Protein Analysis

49

Amino Acids

5.71

Weight (kDa)

10.78

Isoelectric Point (pI)

74.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DVL	PF08137	27 - 44	1.2e-09	DVL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63088
fragaria_vesca	FvH4_2g23871
prunus_persica	Prupe.1G150500_v2.0.a1 Prupe.8G244200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291491

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	79
Alw21I	GWGCWC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bse1I	ACTGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	46, 49
BsiHKAI	GWGCWC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	54, 117
Cac8I	GCNNGC	1 cut(s)	13
CviAII	CATG	2 cut(s)	106, 124
CviJI	RGCY	1 cut(s)	97
CviKI_1	RGCY	1 cut(s)	97
FaeI	CATG	2 cut(s)	109, 127
FaiI	YATR	2 cut(s)	107, 125
FatI	CATG	2 cut(s)	105, 123
Hin1II	CATG	2 cut(s)	109, 127
HpyAV	CCTTC	2 cut(s)	63, 87
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	109, 127
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	2 cut(s)	25, 42
LweI	GCATC	1 cut(s)	104
MboII	GAAGA	2 cut(s)	60, 145
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	3 cut(s)	24, 27, 81
MslI	CAYNNNNRTG	2 cut(s)	122, 128
NlaIII	CATG	2 cut(s)	109, 127
RseI	CAYNNNNRTG	2 cut(s)	122, 128
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	104
SgeI	CNNG	7 cut(s)	24, 42, 54, 69, 118, 136, 140
SmiMI	CAYNNNNRTG	2 cut(s)	122, 128
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	121
TasI	AATT	1 cut(s)	145
TscAI	CASTG	2 cut(s)	61, 124
TspRI	CASTG	2 cut(s)	61, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.