AT3G63230

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016085
Physical Location & Seq
Forward (+)
23359633 .. 23360338
706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63230.2

Sequence Viewer

Length: 375 bp
ATGGCGAATATAATGATTCCGAGCAAGAGACCGCGAGCCCCAAGCTTCTCTGAGAAGCATCCAAAGTACGTAGGTTCTTCGGATTGGTTGCCGGCAGAGAAAGACAAGGCTCAAGTTCAGCTCACTAACTTCCTTGAGCTATGTCGTTTCTGCAAGAAGAATCTACGTCATGACGAGGACGTTTTCATGTACGGATACTTGGGGGCATTCTGTTCAAAACAATGCAGAGCAAAACAGATGGCATGCGACGTCTTTAGAGATTTCTCGAGACAGAAAGCAAATGTTAAGAAGGGAAGAACATCCAAAGATGAGGGATTAGATAGGATCTCATCATCACCATCATCATCATCATCATCATCATGCTTTTATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

124

Amino Acids

14.13

Weight (kDa)

9.43

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 34 - 83 2.7e-18 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63230 AT3G63230
fragaria_vesca FvH4_2g23180 FvH4_2g23180
prunus_persica Prupe.8G237300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290431
rosa_laevigata RLG00000012219
rosa_roxburghii Rroxscaffold_7G00177070
rosa_rugosa Rorug06G0212700 Rorug06G0212700
rosa_samantha Rh6AG322700 Rh6BG330200 Rh6CG336300 Rh6DG323100
rosa_wichuraiana Rw6G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 68, 191
AgsI TTSAA 1 cut(s) 216
AluBI AGCT 3 cut(s) 45, 121, 139
AluI AGCT 3 cut(s) 45, 121, 139
Alw26I GTCTC 2 cut(s) 22, 262
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 265
BanII GRGCYC 1 cut(s) 40
BccI CCATC 2 cut(s) 232, 346
BciVI GTATCC 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 22, 262
BfuI GTATCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 265
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 96, 155
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 91
BseGI GGATG 2 cut(s) 58, 299
BseMII CTCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 22, 262
BsmI GAATGC 1 cut(s) 206
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 169
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 1 cut(s) 324
BssNI GRCGYC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 36, 93, 244
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 58, 299
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 22, 262
BstMBI GATC 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 246
BstSNI TACGTA 1 cut(s) 70
BstUI CGCG 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuI GTATCC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 58, 299
Cac8I GCNNGC 3 cut(s) 36, 93, 244
CciI TCATGA 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 2 cut(s) 67, 190
CviAII CATG 4 cut(s) 170, 187, 243, 360
CviJI RGCY 5 cut(s) 38, 45, 110, 121, 139
CviKI_1 RGCY 5 cut(s) 38, 45, 110, 121, 139
CviQI GTAC 2 cut(s) 67, 190
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eco105I TACGTA 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 4 cut(s) 173, 190, 246, 363
FaiI YATR 9 cut(s) 11, 142, 171, 188, 244, 361, 369, 371, 373
FatI CATG 4 cut(s) 169, 186, 242, 359
FokI GGATG 2 cut(s) 45, 286
FriOI GRGCYC 1 cut(s) 40
HapII CCGG 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 4 cut(s) 173, 190, 246, 363
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 2 cut(s) 16, 160
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 21, 52, 82
Hpy188III TCNNGA 3 cut(s) 170, 265, 267
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 283
HpyCH4IV ACGT 4 cut(s) 69, 166, 180, 249
HpyCH4V TGCA 2 cut(s) 153, 225
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 4 cut(s) 69, 166, 180, 249
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 4 cut(s) 173, 190, 246, 363
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 1 cut(s) 105
LweI GCATC 1 cut(s) 67
MaeII ACGT 4 cut(s) 69, 166, 180, 249
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 3 cut(s) 69, 169, 306
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 40
MnlI CCTC 2 cut(s) 169, 304
MroNI GCCGGC 1 cut(s) 91
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 358
MspI CCGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 206
MvnI CGCG 1 cut(s) 34
NaeI GCCGGC 1 cut(s) 93
NdeII GATC 1 cut(s) 324
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 4 cut(s) 173, 190, 246, 363
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 265
PagI TCATGA 1 cut(s) 169
PctI GAATGC 1 cut(s) 206
PdiI GCCGGC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 16, 160
Ppu21I YACGTR 1 cut(s) 70
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 2 cut(s) 68, 191
RsaNI GTAC 2 cut(s) 67, 190
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 1 cut(s) 324
SduI GDGCHC 1 cut(s) 40
SetI ASST 8 cut(s) 47, 72, 76, 123, 141, 169, 183, 252
SfaNI GCATC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 265
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 3 cut(s) 111, 134, 265
SmoI CTYRAG 3 cut(s) 111, 134, 265
SnaBI TACGTA 1 cut(s) 70
SphI GCATGC 1 cut(s) 246
SsiI CCGC 1 cut(s) 32
TaiI ACGT 4 cut(s) 72, 169, 183, 252
TaqI TCGA 1 cut(s) 266
TfiI GAWTC 2 cut(s) 16, 160
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 207
XceI RCATGY 1 cut(s) 246
XhoI CTCGAG 1 cut(s) 265
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.