Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Forward (+)

33855139 .. 33858642

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTCTATCTCCTAATATCTTGTGTCTCATTCATCCTTGTTTCCAAGTCCTTCACCAACAAGCAAGCATGGCAGCAGGGTAAGCTCAAGTTGTTTTCAATTGGGCCATCAAATTTCCTAGTGTCCTGGTTCCAGAATAGTAGGCTTTATACAGGTTTATTCCAACCCATTACCTTCCAAGTTAAACAAATGATGGCCGAGTCTTCTAGTTCAAGATTAGTTGTGGAGAATGTGGATCAGGAACAACAAGCTGGCCATGTTTCTTTATTGGATTTGCCTGATTTGACATTGGAGTGCATTCTTGAAAGGCTTTCCCCATCTGGGTTATGCAATATGGCTGGAGTTTGTACTTCTATGAGGGATAGGTGTACAAGTGACCATTTTTGGAAGAAGCATATGAAGCAGAAATGGGGTAAACTGATTGGGGCTGCTGCTTATAGAGAATGGGAATTGCAGCATATGGCTATAGCAAGAAGAAGAAACAGCGAGTCTGATCAAACCAAGAAGAAAAGTGTACTTGACTCCCTTTTTGGGTTTTTACCTTTTTGTTCATGGGTGATCAGACCAAAATCACAAAGTTGCAGGGCGAAGAGTACTGGTGCGACTACTTTTTCGGTTGATTCCATCATGTCTTTATATCTTTCTCTTGAAAGAGGGGACTTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAACGGTAATGTAGGCTTTATGCTGTCTTGTTATGATGCACAACTGAGCTATGATTCGGGAACAGACACATTTCAAGCAAGGTATTCACCTTATGGGAGGAGGACAAATGAGGAACATATACCGTGGGATAGACTAAGAGCTACTCCAGTTGATACTCCCTCACATATGCTTCATGTCTCTGATTGTTTACATGACTTAAAACCCGGTGATCATATCGAAATCCAATGGAGAAGAAGCAAGGAATTCCCTTATGGTTGGTGGTATGGTGTCATTGGCCACTTCGACCTGTGCGATGGGAATGAGAATCACTGCCATTGTCACTGCAATGATATAGTAGTACTGGAGTTCAGTCAATATACCCCTGGCTCGCGATGGAGACAAATGATGATAAACCGAAAAGATCACCGAGAAGAAGGAAACGAGGCAGATGGTTTCTATGGAGGAATTAGAAAGCTTTACAATGGCGAGGAAATTGCAAAATGGAAGCTCCTATGGCCTAACCAAGTCCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

402

Amino Acids

46.57

Weight (kDa)

7.92

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	89 - 131	3.6e-08	F-box domain
F-box-like	PF12937	90 - 132	1.9e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1201
AccII	CGCG	1 cut(s)	1063
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	3 cut(s)	195, 253, 967
AcsI	RAATTY	2 cut(s)	112, 935
AfaI	GTAC	5 cut(s)	349, 370, 516, 595, 1032
AfiI	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
AgsI	TTSAA	5 cut(s)	99, 213, 305, 650, 767
AjnI	CCWGG	3 cut(s)	125, 1054, 1200
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	7 cut(s)	85, 251, 674, 741, 833, 1147, 1180
AluI	AGCT	7 cut(s)	85, 251, 674, 741, 833, 1147, 1180
Alw26I	GTCTC	3 cut(s)	31, 874, 1063
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	5 cut(s)	104, 195, 253, 967, 1187
ApeKI	GCWGC	4 cut(s)	73, 428, 431, 454
ApoI	RAATTY	2 cut(s)	112, 935
ArsI	GACNNNNNNTTYG	4 cut(s)	512, 544, 595, 627
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	5 cut(s)	46, 568, 771, 911, 1088
BalI	TGGCCA	2 cut(s)	255, 969
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	85, 415, 418, 466
BccI	CCATC	7 cut(s)	115, 187, 325, 632, 980, 1059, 1115
BcgI	CGANNNNNNTGC	2 cut(s)	1148, 1182
BciT130I	CCWGG	3 cut(s)	127, 1056, 1202
BclI	TGATCA	3 cut(s)	493, 558, 901
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	3 cut(s)	31, 874, 1063
BfaI	CTAG	2 cut(s)	119, 207
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	4 cut(s)	74, 429, 432, 455
BlsI	GCNGC	4 cut(s)	75, 430, 433, 456
BmcAI	AGTACT	2 cut(s)	595, 1032
Bme1390I	CCNGG	4 cut(s)	127, 897, 1056, 1202
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	131, 668
BmrFI	CCNGG	4 cut(s)	127, 897, 1056, 1202
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	3 cut(s)	360, 822, 1055
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	815, 1054
Bsc4I	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
Bse1I	ACTGG	3 cut(s)	601, 839, 1038
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	3 cut(s)	127, 1056, 1202
BseDI	CCNNGG	2 cut(s)	815, 1054
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	2 cut(s)	689, 728
BseNI	ACTGG	3 cut(s)	601, 839, 1038
BseRI	GAGGAG	1 cut(s)	805
BseXI	GCAGC	4 cut(s)	85, 415, 418, 466
BseYI	CCCAGC	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	1063
BshFI	GGCC	5 cut(s)	106, 197, 255, 969, 1189
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
BsmAI	GTCTC	3 cut(s)	31, 874, 1063
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	5 cut(s)	106, 197, 255, 969, 1189
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	235, 493, 558, 901, 1093
Bsp68I	TCGCGA	1 cut(s)	1063
BspANI	GGCC	5 cut(s)	106, 197, 255, 969, 1189
BspCNI	CTCAG	2 cut(s)	688, 729
BspFNI	CGCG	1 cut(s)	1063
BspLI	GGNNCC	2 cut(s)	131, 668
BspPI	GGATC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	1024
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	601, 839, 1038
BssECI	CCNNGG	2 cut(s)	815, 1054
BssMI	GATC	5 cut(s)	235, 493, 558, 901, 1093
Bst2UI	CCWGG	3 cut(s)	127, 1056, 1202
Bst4CI	ACNGT	3 cut(s)	689, 698, 816
Bst6I	CTCTTC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	66, 253, 1061
BstDEI	CTNAG	3 cut(s)	675, 737, 827
BstDSI	CCRYGG	1 cut(s)	815
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	1063
BstKTI	GATC	5 cut(s)	238, 496, 561, 904, 1096
BstMAI	GTCTC	3 cut(s)	31, 874, 1063
BstMBI	GATC	5 cut(s)	235, 493, 558, 901, 1093
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 82, 400, 1186
BstNI	CCWGG	3 cut(s)	127, 1056, 1202
BstSCI	CCNGG	4 cut(s)	125, 895, 1054, 1200
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	1063
BstV1I	GCAGC	4 cut(s)	85, 415, 418, 466
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	5 cut(s)	106, 197, 255, 969, 1189
BtgI	CCRYGG	1 cut(s)	815
BtgZI	GCGATG	2 cut(s)	999, 1078
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	2 cut(s)	1000, 1012
BtsIMutI	CAGTG	2 cut(s)	1000, 1012
BtuMI	TCGCGA	1 cut(s)	1063
Cac8I	GCNNGC	3 cut(s)	66, 253, 1061
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	5 cut(s)	348, 369, 515, 594, 1031
CviAII	CATG	6 cut(s)	69, 257, 552, 628, 866, 884
CviQI	GTAC	5 cut(s)	348, 369, 515, 594, 1031
DdeI	CTNAG	3 cut(s)	675, 737, 827
DpnI	GATC	5 cut(s)	237, 495, 560, 903, 1095
DpnII	GATC	5 cut(s)	235, 493, 558, 901, 1093
EaeI	YGGCCR	3 cut(s)	195, 253, 967
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	3 cut(s)	125, 1054, 1200
FaeI	CATG	6 cut(s)	72, 260, 555, 631, 869, 887
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	6 cut(s)	68, 256, 551, 627, 865, 883
FauNDI	CATATG	3 cut(s)	396, 459, 858
FbaI	TGATCA	3 cut(s)	493, 558, 901
Fnu4HI	GCNGC	4 cut(s)	74, 429, 432, 455
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	74, 429, 432, 455
FspBI	CTAG	2 cut(s)	119, 207
GluI	GCNGC	4 cut(s)	74, 429, 432, 455
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	3 cut(s)	360, 822, 1055
HaeIII	GGCC	5 cut(s)	106, 197, 255, 969, 1189
HapII	CCGG	1 cut(s)	897
Hin1II	CATG	6 cut(s)	72, 260, 555, 631, 869, 887
HindIII	AAGCTT	1 cut(s)	1145
HinfI	GANTC	6 cut(s)	200, 488, 521, 620, 746, 997
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	5 cut(s)	46, 568, 771, 911, 1088
Hpy166II	GTNNAC	4 cut(s)	369, 416, 515, 881
Hpy188I	TCNGA	3 cut(s)	493, 563, 874
Hpy188III	TCNNGA	7 cut(s)	133, 213, 239, 302, 647, 750, 1062
Hpy8I	GTNNAC	4 cut(s)	369, 416, 515, 881
HpyAV	CCTTC	3 cut(s)	61, 184, 1100
HpyCH4III	ACNGT	3 cut(s)	689, 698, 816
HpyCH4V	TGCA	7 cut(s)	297, 330, 454, 582, 731, 1017, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 82, 400, 1186
HpyF3I	CTNAG	3 cut(s)	675, 737, 827
Hsp92II	CATG	6 cut(s)	72, 260, 555, 631, 869, 887
Ksp22I	TGATCA	3 cut(s)	493, 558, 901
Kzo9I	GATC	5 cut(s)	235, 493, 558, 901, 1093
LmnI	GCTCC	1 cut(s)	1185
Lsp1109I	GCAGC	4 cut(s)	85, 415, 418, 466
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	2 cut(s)	119, 207
MaeIII	GTNAC	2 cut(s)	374, 1010
MalI	GATC	5 cut(s)	237, 495, 560, 903, 1095
MboI	GATC	5 cut(s)	235, 493, 558, 901, 1093
MboII	GAAGA	8 cut(s)	195, 400, 486, 489, 517, 601, 936, 1115
MfeI	CAATTG	1 cut(s)	99
MlsI	TGGCCA	2 cut(s)	255, 969
MluCI	AATT	6 cut(s)	99, 112, 449, 935, 1137, 1164
MluNI	TGGCCA	2 cut(s)	255, 969
MlyI	GAGTC	3 cut(s)	209, 497, 515
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	351, 647, 783, 786, 796, 862, 1108, 1127, 1153
Mox20I	TGGCCA	2 cut(s)	255, 969
MscI	TGGCCA	2 cut(s)	255, 969
MseI	TTAA	2 cut(s)	183, 890
MslI	CAYNNNNRTG	2 cut(s)	292, 1017
Msp20I	TGGCCA	2 cut(s)	255, 969
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	4 cut(s)	127, 897, 1056, 1202
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	3 cut(s)	127, 1056, 1202
MvnI	CGCG	1 cut(s)	1063
MwoI	GCNNNNNNNGC	4 cut(s)	70, 82, 400, 1186
NciI	CCSGG	1 cut(s)	897
NdeI	CATATG	3 cut(s)	396, 459, 858
NdeII	GATC	5 cut(s)	235, 493, 558, 901, 1093
NlaIII	CATG	6 cut(s)	72, 260, 555, 631, 869, 887
NlaIV	GGNNCC	2 cut(s)	131, 668
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	374, 1010
NruI	TCGCGA	1 cut(s)	1063
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	620, 746, 997
PflMI	CCANNNNNTGG	1 cut(s)	1201
PfoI	TCCNGGA	1 cut(s)	1200
PkrI	GCNGC	4 cut(s)	75, 430, 433, 456
PleI	GAGTC	3 cut(s)	208, 496, 515
PpsI	GAGTC	3 cut(s)	208, 496, 515
Psp6I	CCWGG	3 cut(s)	125, 1054, 1200
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	3 cut(s)	125, 1054, 1200
PspN4I	GGNNCC	2 cut(s)	131, 668
PspPI	GGNCC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	1063
RsaI	GTAC	5 cut(s)	349, 370, 516, 595, 1032
RsaNI	GTAC	5 cut(s)	348, 369, 515, 594, 1031
RseI	CAYNNNNRTG	2 cut(s)	292, 1017
SaqAI	TTAA	2 cut(s)	183, 890
SatI	GCNGC	4 cut(s)	74, 429, 432, 455
Sau3AI	GATC	5 cut(s)	235, 493, 558, 901, 1093
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	2 cut(s)	595, 1032
SchI	GAGTC	3 cut(s)	209, 497, 515
ScrFI	CCNGG	4 cut(s)	127, 897, 1056, 1202
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	292, 1017
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	6 cut(s)	99, 112, 449, 935, 1137, 1164
SspMI	CTAG	2 cut(s)	119, 207
StyD4I	CCNGG	4 cut(s)	125, 895, 1054, 1200
TaaI	ACNGT	3 cut(s)	689, 698, 816
TaqI	TCGA	2 cut(s)	909, 975
TasI	AATT	6 cut(s)	99, 112, 449, 935, 1137, 1164
TatI	WGTACW	5 cut(s)	347, 368, 514, 593, 1030
TfiI	GAWTC	3 cut(s)	620, 746, 997
Tru1I	TTAA	2 cut(s)	183, 890
Tru9I	TTAA	2 cut(s)	183, 890
TscAI	CASTG	2 cut(s)	1007, 1019
TseFI	GTSAC	2 cut(s)	374, 1010
TseI	GCWGC	4 cut(s)	73, 428, 431, 454
Tsp45I	GTSAC	2 cut(s)	374, 1010
TspDTI	ATGAA	4 cut(s)	22, 413, 540, 854
TspRI	CASTG	2 cut(s)	1007, 1019
Van91I	CCANNNNNTGG	1 cut(s)	1201
XapI	RAATTY	2 cut(s)	112, 935
XspI	CTAG	2 cut(s)	119, 207
ZrmI	AGTACT	2 cut(s)	595, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.