Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Forward (+)

19880816 .. 19883197

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15931.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGCAACAAAGCCAACAACAACAACAGTGTCGTCGACAATGTGCGCAGCAATTGAGCCAGCAAGAGCGTCAACAAATCTGCCATCAACGTTGTCAAATGCAAGATAGCAACGACCAACAATGCCAAAGAAGGTGCATGCAGCAGCTCGAGCAAGGAGAAATAGAAATAGAGATTAACCCATCAAGAGATCCTGAACAAAAGCTTGAGCAATGCCAACAAGGTTGCCGAATGATGCAACAAGGCCAACAACAACAGCAGTGTCGTCGACAATGTGCACAACAATTGAGCCAGCGAGAACGTCAACAAATCTGCCATCAACGTTGTCAGATGCAAGATAGCAATGATAAACAATGCCAAAAAAGGTGCATACAGCAACTCGAGAAAGGAGAGATAGAAATGGAGATTAACCGAACAAGAGATCCCGAACAAAAGCTTGAGCAATGCCAACAAAGTTGCCGAATGATGCAACAAGGCCAACAACAGCAGCAATGTCGTAGAGAATGCGCACATCAATTGAGCCAGCGAGAGCGTCAACAAATCTGCCAACAACGTTGTCAGATACAACAAAGTGGAGATCAGCAACAGTGCCAAAGAAGGTGCCAGCAACAACTTGAGCAAGGTCAGGTCCAGAACTACCATGAAATAAGTCGGGGTGAGAGTCAAATGAACAACCCTTACTTCTTTCCCTCAGACATGTTTCACCAAAAATTCAGGTCTGAAGAAGGTGGGATGTATGTTCTTGAGAGGTTCACCATGAATCAAAATATGCTTCTTCGCGGCATTAGGAACTATCGATTAGCCATCTTTGAGGCCAGGCCCAACACTTTCGTCCTCCCACACCATTGTGACGCTGAATCCATTTATGTTGTTATCAATGGACGTTGCACCTGTACAATGATGATGCAAGACAACAAGGACTCCTTCAAATTGGAAAAGGGTGATGTCGTCAGAGTTCCTGCAGGGGCTATGGTCTACCTTGTTAACAACGACATGGAGACTCTAAGAATAGCAAAGCTCATGCAGCCAGTCAACACTCCAGGACGATTTGAGTTCCTCTTCTCTTCATCTTCTTCTCTTCCTCAGTTTTGCTTGCCTATTTGCCTTTCAGTTTTGGCGATGAAACCCTCAGAAGTACTGAGTACGATACCGATTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

387

Amino Acids

45.72

Weight (kDa)

8.22

Isoelectric Point (pI)

69.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	135 - 207	1.6e-07	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	48, 508
AccB1I	GGYRCC	1 cut(s)	600
AccI	GTMKAC	3 cut(s)	37, 268, 975
AccII	CGCG	1 cut(s)	780
AciI	CCGC	1 cut(s)	780
AclI	AACGTT	3 cut(s)	91, 322, 553
AclWI	GGATC	2 cut(s)	185, 416
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	3 cut(s)	895, 1137, 1144
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	1 cut(s)	928
AjnI	CCWGG	2 cut(s)	815, 1039
AleI	CACNNNNGTG	1 cut(s)	846
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	4 cut(s)	148, 205, 436, 1018
AluI	AGCT	4 cut(s)	148, 205, 436, 1018
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	992
Alw44I	GTGCAC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	185, 416
Ama87I	CYCGRG	2 cut(s)	149, 380
AoxI	GGCC	4 cut(s)	244, 475, 813, 818
ApaLI	GTGCAC	1 cut(s)	276
ApeKI	GCWGC	5 cut(s)	49, 142, 145, 487, 1024
ApoI	RAATTY	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	49, 509
AspS9I	GGNCC	2 cut(s)	628, 819
AsuHPI	GGTGA	4 cut(s)	668, 695, 745, 953
AvaI	CYCGRG	2 cut(s)	149, 380
AvaII	GGWCC	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	5 cut(s)	61, 154, 157, 499, 1036
BccI	CCATC	4 cut(s)	93, 190, 324, 812
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 476, 510
BciT130I	CCWGG	2 cut(s)	817, 1041
BcoDI	GTCTC	1 cut(s)	992
BfmI	CTRYAG	1 cut(s)	960
BisI	GCNGC	6 cut(s)	50, 143, 146, 488, 781, 1025
BlsI	GCNGC	6 cut(s)	51, 144, 147, 489, 782, 1026
BmcAI	AGTACT	1 cut(s)	1137
Bme1390I	CCNGG	2 cut(s)	817, 1041
Bme18I	GGWCC	1 cut(s)	628
BmeT110I	CYCGRG	2 cut(s)	149, 380
BmgT120I	GGNCC	2 cut(s)	628, 819
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	2 cut(s)	817, 1041
BmsI	GCATC	4 cut(s)	225, 321, 456, 894
BpmI	CTGGAG	1 cut(s)	1023
BpuEI	CTTGAG	4 cut(s)	227, 458, 635, 764
Bsa29I	ATCGAT	1 cut(s)	796
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bse1I	ACTGG	1 cut(s)	1028
Bse3DI	GCAATG	4 cut(s)	218, 349, 449, 497
BseBI	CCWGG	2 cut(s)	817, 1041
BseCI	ATCGAT	1 cut(s)	796
BseGI	GGATG	1 cut(s)	738
BseMI	GCAATG	4 cut(s)	218, 349, 449, 497
BseMII	CTCAG	4 cut(s)	705, 1097, 1130, 1143
BseNI	ACTGG	1 cut(s)	1028
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	5 cut(s)	61, 154, 157, 499, 1036
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	4 cut(s)	246, 477, 815, 820
BshNI	GGYRCC	1 cut(s)	600
BshVI	ATCGAT	1 cut(s)	796
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	2 cut(s)	149, 380
BsmAI	GTCTC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	4 cut(s)	246, 477, 815, 820
BsoBI	CYCGRG	2 cut(s)	149, 380
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	893
Bsp143I	GATC	3 cut(s)	190, 421, 577
BspACI	CCGC	1 cut(s)	780
BspANI	GGCC	4 cut(s)	246, 477, 815, 820
BspCNI	CTCAG	4 cut(s)	704, 1096, 1131, 1142
BspDI	ATCGAT	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	602
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	2 cut(s)	185, 416
BspT107I	GGYRCC	1 cut(s)	600
BsrDI	GCAATG	4 cut(s)	218, 349, 449, 497
BsrGI	TGTACA	1 cut(s)	893
BsrI	ACTGG	1 cut(s)	1028
BssMI	GATC	3 cut(s)	190, 421, 577
Bst2UI	CCWGG	2 cut(s)	817, 1041
Bst4CI	ACNGT	2 cut(s)	30, 588
Bst6I	CTCTTC	3 cut(s)	1064, 1069, 1083
BstAUI	TGTACA	1 cut(s)	893
BstC8I	GCNNGC	6 cut(s)	62, 140, 293, 524, 605, 1094
BstDEI	CTNAG	5 cut(s)	691, 1004, 1083, 1129, 1139
BstF5I	GGATG	1 cut(s)	738
BstFNI	CGCG	1 cut(s)	780
BstHHI	GCGC	2 cut(s)	49, 509
BstKTI	GATC	3 cut(s)	193, 424, 580
BstMAI	GTCTC	1 cut(s)	992
BstMBI	GATC	3 cut(s)	190, 421, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 1024
BstNI	CCWGG	2 cut(s)	817, 1041
BstNSI	RCATGY	2 cut(s)	142, 700
BstSCI	CCNGG	2 cut(s)	815, 1039
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	280
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	5 cut(s)	61, 154, 157, 499, 1036
BstX2I	RGATCY	2 cut(s)	190, 421
BstYI	RGATCY	2 cut(s)	190, 421
Bsu15I	ATCGAT	1 cut(s)	796
BsuRI	GGCC	4 cut(s)	246, 477, 815, 820
BsuTUI	ATCGAT	1 cut(s)	796
BtgZI	GCGATG	1 cut(s)	1133
BtsCI	GGATG	1 cut(s)	738
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	3 cut(s)	35, 266, 593
Cac8I	GCNNGC	6 cut(s)	62, 140, 293, 524, 605, 1094
CfoI	GCGC	2 cut(s)	49, 509
Cfr13I	GGNCC	2 cut(s)	628, 819
ClaI	ATCGAT	1 cut(s)	796
CseI	GACGC	3 cut(s)	59, 521, 860
Csp6I	GTAC	3 cut(s)	894, 1136, 1143
CviAII	CATG	6 cut(s)	139, 641, 697, 757, 994, 1021
CviQI	GTAC	3 cut(s)	894, 1136, 1143
DdeI	CTNAG	5 cut(s)	691, 1004, 1083, 1129, 1139
DpnI	GATC	3 cut(s)	192, 423, 579
DpnII	GATC	3 cut(s)	190, 421, 577
Eam1104I	CTCTTC	3 cut(s)	1064, 1069, 1083
EarI	CTCTTC	3 cut(s)	1064, 1069, 1083
Eco47I	GGWCC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	2 cut(s)	149, 380
EcoRII	CCWGG	2 cut(s)	815, 1039
FaeI	CATG	6 cut(s)	142, 644, 700, 760, 997, 1024
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FatI	CATG	6 cut(s)	138, 640, 696, 756, 993, 1020
FblI	GTMKAC	3 cut(s)	37, 268, 975
Fnu4HI	GCNGC	6 cut(s)	50, 143, 146, 488, 781, 1025
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	6 cut(s)	50, 143, 146, 488, 781, 1025
FspAI	RTGCGCAY	1 cut(s)	508
FspI	TGCGCA	2 cut(s)	48, 508
GlaI	GCGC	2 cut(s)	48, 508
GluI	GCNGC	6 cut(s)	50, 143, 146, 488, 781, 1025
GsuI	CTGGAG	1 cut(s)	1023
HaeIII	GGCC	4 cut(s)	246, 477, 815, 820
HgaI	GACGC	3 cut(s)	59, 521, 860
HhaI	GCGC	2 cut(s)	49, 509
Hin1II	CATG	6 cut(s)	142, 644, 700, 760, 997, 1024
Hin6I	GCGC	2 cut(s)	47, 507
HinP1I	GCGC	2 cut(s)	47, 507
HincII	GTYRAC	7 cut(s)	38, 74, 269, 305, 536, 985, 1033
HindII	GTYRAC	7 cut(s)	38, 74, 269, 305, 536, 985, 1033
HindIII	AAGCTT	2 cut(s)	203, 434
HinfI	GANTC	5 cut(s)	661, 760, 857, 920, 1000
HpaI	GTTAAC	1 cut(s)	985
HphI	GGTGA	4 cut(s)	668, 695, 745, 953
Hpy188I	TCNGA	6 cut(s)	330, 561, 694, 721, 953, 1132
Hpy188III	TCNNGA	6 cut(s)	186, 194, 382, 425, 631, 743
Hpy99I	CGWCG	2 cut(s)	39, 270
HpyAV	CCTTC	4 cut(s)	126, 591, 719, 934
HpyCH4III	ACNGT	2 cut(s)	30, 588
HpyCH4IV	ACGT	5 cut(s)	91, 301, 322, 553, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 1024
HpyF3I	CTNAG	5 cut(s)	691, 1004, 1083, 1129, 1139
HpySE526I	ACGT	5 cut(s)	91, 301, 322, 553, 883
Hsp92II	CATG	6 cut(s)	142, 644, 700, 760, 997, 1024
HspAI	GCGC	2 cut(s)	47, 507
KspAI	GTTAAC	1 cut(s)	985
Kzo9I	GATC	3 cut(s)	190, 421, 577
Lsp1109I	GCAGC	5 cut(s)	61, 154, 157, 499, 1036
LweI	GCATC	4 cut(s)	225, 321, 456, 894
MaeII	ACGT	5 cut(s)	91, 301, 322, 553, 883
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	3 cut(s)	192, 423, 579
MboI	GATC	3 cut(s)	190, 421, 577
MboII	GAAGA	7 cut(s)	734, 767, 1051, 1056, 1062, 1065, 1070
MfeI	CAATTG	3 cut(s)	53, 284, 515
MflI	RGATCY	2 cut(s)	190, 421
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	5 cut(s)	53, 284, 515, 710, 929
MlyI	GAGTC	3 cut(s)	670, 914, 994
MnlI	CCTC	7 cut(s)	700, 741, 805, 845, 1067, 1092, 1138
MseI	TTAA	3 cut(s)	177, 408, 984
MslI	CAYNNNNRTG	1 cut(s)	846
MspR9I	CCNGG	2 cut(s)	817, 1041
MunI	CAATTG	3 cut(s)	53, 284, 515
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	817, 1041
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	151, 1024
NdeII	GATC	3 cut(s)	190, 421, 577
NlaIII	CATG	6 cut(s)	142, 644, 700, 760, 997, 1024
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	848
NsbI	TGCGCA	2 cut(s)	48, 508
NspI	RCATGY	2 cut(s)	142, 700
OliI	CACNNNNGTG	1 cut(s)	846
PaeI	GCATGC	1 cut(s)	142
PaeR7I	CTCGAG	2 cut(s)	149, 380
PciI	ACATGT	1 cut(s)	696
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	760, 857
PfoI	TCCNGGA	1 cut(s)	1039
PkrI	GCNGC	6 cut(s)	51, 144, 147, 489, 782, 1026
PleI	GAGTC	3 cut(s)	669, 914, 994
PpsI	GAGTC	3 cut(s)	669, 914, 994
PscI	ACATGT	1 cut(s)	696
Psp1406I	AACGTT	3 cut(s)	91, 322, 553
Psp6I	CCWGG	2 cut(s)	815, 1039
PspGI	CCWGG	2 cut(s)	815, 1039
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	2 cut(s)	628, 819
PspXI	VCTCGAGB	1 cut(s)	149
PsrI	GAACNNNNNNTAC	2 cut(s)	662, 694
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	2 cut(s)	190, 421
RsaI	GTAC	3 cut(s)	895, 1137, 1144
RsaNI	GTAC	3 cut(s)	894, 1136, 1143
RseI	CAYNNNNRTG	1 cut(s)	846
SalI	GTCGAC	2 cut(s)	36, 267
SaqAI	TTAA	3 cut(s)	177, 408, 984
SatI	GCNGC	6 cut(s)	50, 143, 146, 488, 781, 1025
Sau3AI	GATC	3 cut(s)	190, 421, 577
Sau96I	GGNCC	2 cut(s)	628, 819
SbfI	CCTGCAGG	1 cut(s)	964
ScaI	AGTACT	1 cut(s)	1137
SchI	GAGTC	3 cut(s)	670, 914, 994
ScrFI	CCNGG	2 cut(s)	817, 1041
SdaI	CCTGCAGG	1 cut(s)	964
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	4 cut(s)	225, 321, 456, 894
SfcI	CTRYAG	1 cut(s)	960
Sfr274I	CTCGAG	2 cut(s)	149, 380
SinI	GGWCC	1 cut(s)	628
SlaI	CTCGAG	2 cut(s)	149, 380
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	6 cut(s)	149, 206, 380, 437, 614, 743
SmoI	CTYRAG	6 cut(s)	149, 206, 380, 437, 614, 743
SphI	GCATGC	1 cut(s)	142
Sse8387I	CCTGCAGG	1 cut(s)	964
Sse9I	AATT	5 cut(s)	53, 284, 515, 710, 929
SsiI	CCGC	1 cut(s)	780
StyD4I	CCNGG	2 cut(s)	815, 1039
TaaI	ACNGT	2 cut(s)	30, 588
TaiI	ACGT	5 cut(s)	94, 304, 325, 556, 886
TaqI	TCGA	5 cut(s)	37, 150, 268, 381, 796
TasI	AATT	5 cut(s)	53, 284, 515, 710, 929
TatI	WGTACW	2 cut(s)	893, 1135
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	2 cut(s)	760, 857
Tru1I	TTAA	3 cut(s)	177, 408, 984
Tru9I	TTAA	3 cut(s)	177, 408, 984
TscAI	CASTG	3 cut(s)	35, 266, 593
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	5 cut(s)	49, 142, 145, 487, 1024
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	5 cut(s)	657, 683, 773, 1056, 1136
TspRI	CASTG	3 cut(s)	35, 266, 593
VneI	GTGCAC	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	1 cut(s)	710
XceI	RCATGY	2 cut(s)	142, 700
XhoI	CTCGAG	2 cut(s)	149, 380
XmiI	GTMKAC	3 cut(s)	37, 268, 975
ZrmI	AGTACT	1 cut(s)	1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.