Rmu_sc0020894.1_g000006

Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020894.1
Physical Location & Seq
Forward (+)
28583 .. 30398
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020894.1_g000006.1.cds

Sequence Viewer

Length: 1428 bp
ctgatcccgactttgctggtcctccctttctcgtcgatagttctggccctgaccgtattgaccctgctcaagttgttgctggcaccttctttggcactgttgttgctgttgttgatccccacgttgttgcctctggcagcgttgctcgcagatttgttgacgctctcgctggctcaattgctgtgcacattgctgactgcactgctgctgcagctcgagcaaggagaacaagacattaatacattaacagatcccgaacaaaaacttgagcaatgtcaacagggttgccaatcaagggaacaaggccaacaagagcagcagcagcagtgcagtcagcaatgtgcacagcaattgagccagcgagagcgtcaacaaatctgcgagcaacgctgccagaggcaacaacgtggggatcaacaacagcaacaacagtgccaaagaaggtgccagcaacaacttgagcagggtcaatacggtcagggccagaactatcgacgagaaagggaggaccagcaaagtcgggatcagagccaaatgaacaacccttactactttccctcggacatgtttcagcaaaaattcaggtctcaagaaggtgggatgtatgttcttgagaggtttaccaagaatgaaaataagcttcttcgcggcattaggaactaccgattagccatcatcgaggccaagcccaacactttcgtcctcccacaccattgtgatgctgaatctattttcgttgttatcaatggacgttgcacctgtacaatgttgatgcaagacaacaaagagtcattcaacatggaaatgggtgatgtcctcagagttcctgcaggggctaccgtctaccttgttaacaacaacaatgatcagactctaagaattgcaaagctcaagcagccagtcaacactcctggacgatttgaggaattcttccctgcaagttctcaagacctagactcatacttaaacgttttcagcgatgacattcttgaatcagccttcaatattattatcaccttctttggcagtgttgctgctgttgccaatccccacgttgctgcctttgacagcgctgctggcacatttgttggcgctcgtgctggctcatttgttgaccgcattgttggcggcattgctgctgctgttgctggccgtgttgcctcgactggcaactctccacgcactgctcaaacttctgctcaggatcacgagagaacggggttctgctaccgccaccgcggcctccctgctgctgcatccgctctctgcattcttgctggcactgctgctgttgaaggccgcgcggcatctcctcctggcatcgcctctggcattgctccaactgctgggaaggatcctcatgatgataagcaagagagaaggagattgaagcgaggagaagagtggaaattaggaaaaaagttttga

Protein Analysis

475

Amino Acids

52.77

Weight (kDa)

7.59

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 82, 444
AccB7I CCANNNNNTGG 1 cut(s) 1346
AccBSI CCGCTC 1 cut(s) 1262
AccI GTMKAC 1 cut(s) 843
AccII CGCG 4 cut(s) 648, 1239, 1302, 1304
AciI CCGC 9 cut(s) 648, 1117, 1128, 1231, 1237, 1239, 1260, 1300, 1304
AclI AACGTT 1 cut(s) 969
AclWI GGATC 7 cut(s) 109, 245, 420, 531, 1212, 1349, 1362
AcoI YGGCCR 1 cut(s) 1150
AcsI RAATTY 2 cut(s) 578, 926
AfaI GTAC 1 cut(s) 763
AfeI AGCGCT 1 cut(s) 1072
AfiI CCNNNNNNNGG 2 cut(s) 295, 1346
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 5 cut(s) 796, 992, 1003, 1295, 1390
AjnI CCWGG 2 cut(s) 910, 1315
AleI CACNNNNGTG 1 cut(s) 714
AluBI AGCT 3 cut(s) 214, 640, 889
AluI AGCT 3 cut(s) 214, 640, 889
Alw21I GWGCWC 2 cut(s) 188, 346
Alw26I GTCTC 1 cut(s) 591
Alw44I GTGCAC 2 cut(s) 184, 342
AlwI GGATC 7 cut(s) 109, 245, 420, 531, 1212, 1349, 1362
Ama87I CYCGRG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 1072
AoxI GGCC 7 cut(s) 45, 304, 481, 681, 1150, 1240, 1297
ApaLI GTGCAC 2 cut(s) 184, 342
ApoI RAATTY 2 cut(s) 578, 926
AseI ATTAAT 1 cut(s) 237
AspLEI GCGC 3 cut(s) 1073, 1094, 1304
AspS9I GGNCC 4 cut(s) 19, 46, 481, 508
AsuHPI GGTGA 2 cut(s) 821, 1006
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 19, 508
BaeGI GKGCMC 2 cut(s) 188, 346
BamHI GGATCC 1 cut(s) 1354
BanI GGYRCC 2 cut(s) 82, 444
BauI CACGAG 2 cut(s) 1095, 1208
Bbv12I GWGCWC 2 cut(s) 188, 346
BccI CCATC 1 cut(s) 680
BceAI ACGGC 1 cut(s) 1137
BciT130I CCWGG 2 cut(s) 912, 1317
BclI TGATCA 1 cut(s) 865
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 1 cut(s) 953
BfmI CTRYAG 2 cut(s) 209, 828
BfoI RGCGCY 2 cut(s) 1074, 1095
BglI GCCNNNNNGGC 1 cut(s) 1239
Bme1390I CCNGG 2 cut(s) 912, 1317
Bme18I GGWCC 2 cut(s) 19, 508
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 4 cut(s) 19, 46, 481, 508
BmiI GGNNCC 3 cut(s) 84, 446, 1356
BmrFI CCNGG 2 cut(s) 912, 1317
BmsI GCATC 5 cut(s) 709, 762, 1265, 1316, 1329
Bpu10I CCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 7 cut(s) 53, 287, 479, 573, 632, 875, 930
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 558, 1237
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 1346
Bse1I ACTGG 2 cut(s) 899, 1171
Bse3DI GCAATG 5 cut(s) 188, 278, 344, 1131, 1332
BseBI CCWGG 2 cut(s) 912, 1317
BseDI CCNNGG 2 cut(s) 558, 1237
BseGI GGATG 2 cut(s) 606, 1256
BseLI CCNNNNNNNGG 2 cut(s) 295, 1346
BseMI GCAATG 5 cut(s) 188, 278, 344, 1131, 1332
BseMII CTCAG 2 cut(s) 832, 1214
BseNI ACTGG 2 cut(s) 899, 1171
BseRI GAGGAG 2 cut(s) 1302, 1410
BseSI GKGCMC 2 cut(s) 188, 346
BseYI CCCAGC 1 cut(s) 1346
BsgI GTGCAG 2 cut(s) 183, 349
Bsh1236I CGCG 4 cut(s) 648, 1239, 1302, 1304
BshFI GGCC 7 cut(s) 47, 306, 483, 683, 1152, 1242, 1299
BshNI GGYRCC 2 cut(s) 82, 444
BsiHKAI GWGCWC 2 cut(s) 188, 346
BsiHKCI CYCGRG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 295, 1346
BsmAI GTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 1269
BsnI GGCC 7 cut(s) 47, 306, 483, 683, 1152, 1242, 1299
Bso31I GGTCTC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 188, 346
Bsp1407I TGTACA 1 cut(s) 761
Bsp143I GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
BspACI CCGC 9 cut(s) 648, 1117, 1128, 1231, 1237, 1239, 1260, 1300, 1304
BspANI GGCC 7 cut(s) 47, 306, 483, 683, 1152, 1242, 1299
BspCNI CTCAG 2 cut(s) 831, 1213
BspFNI CGCG 4 cut(s) 648, 1239, 1302, 1304
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 3 cut(s) 84, 446, 1356
BspMAI CTGCAG 2 cut(s) 213, 832
BspPI GGATC 7 cut(s) 109, 245, 420, 531, 1212, 1349, 1362
BspT107I GGYRCC 2 cut(s) 82, 444
BspTNI GGTCTC 1 cut(s) 591
BsrBI CCGCTC 1 cut(s) 1262
BsrDI GCAATG 5 cut(s) 188, 278, 344, 1131, 1332
BsrGI TGTACA 1 cut(s) 761
BsrI ACTGG 2 cut(s) 899, 1171
BssECI CCNNGG 2 cut(s) 558, 1237
BssMI GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
BssSI CACGAG 2 cut(s) 1095, 1208
Bst2BI CACGAG 2 cut(s) 1095, 1208
Bst2UI CCWGG 2 cut(s) 912, 1317
Bst4CI ACNGT 5 cut(s) 55, 99, 432, 476, 841
Bst6I CTCTTC 1 cut(s) 1395
BstAUI TGTACA 1 cut(s) 761
BstDEI CTNAG 3 cut(s) 818, 875, 1200
BstDSI CCRYGG 1 cut(s) 1237
BstF5I GGATG 2 cut(s) 606, 1256
BstFNI CGCG 4 cut(s) 648, 1239, 1302, 1304
BstH2I RGCGCY 2 cut(s) 1074, 1095
BstHHI GCGC 3 cut(s) 1073, 1094, 1304
BstKTI GATC 8 cut(s) 6, 117, 253, 415, 526, 868, 1207, 1357
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
BstNI CCWGG 2 cut(s) 912, 1317
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 2 cut(s) 910, 1315
BstSFI CTRYAG 2 cut(s) 209, 828
BstSLI GKGCMC 2 cut(s) 188, 346
BstUI CGCG 4 cut(s) 648, 1239, 1302, 1304
BstX2I RGATCY 2 cut(s) 250, 1354
BstYI RGATCY 2 cut(s) 250, 1354
BsuRI GGCC 7 cut(s) 47, 306, 483, 683, 1152, 1242, 1299
BtgI CCRYGG 1 cut(s) 1237
BtgZI GCGATG 2 cut(s) 993, 1306
BtsCI GGATG 2 cut(s) 606, 1256
BtsI GCAGTG 5 cut(s) 200, 332, 1033, 1182, 1281
BtsIMutI CAGTG 7 cut(s) 95, 200, 332, 437, 1033, 1182, 1281
CciI TCATGA 1 cut(s) 1360
CfoI GCGC 3 cut(s) 1073, 1094, 1304
Cfr13I GGNCC 4 cut(s) 19, 46, 481, 508
Cfr42I CCGCGG 1 cut(s) 1240
CseI GACGC 2 cut(s) 169, 356
Csp6I GTAC 1 cut(s) 762
CviAII CATG 3 cut(s) 565, 799, 1361
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 3 cut(s) 818, 875, 1200
DpnI GATC 8 cut(s) 5, 116, 252, 414, 525, 867, 1206, 1356
DpnII GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
EaeI YGGCCR 1 cut(s) 1150
Eam1104I CTCTTC 1 cut(s) 1395
EarI CTCTTC 1 cut(s) 1395
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 2 cut(s) 19, 508
Eco47III AGCGCT 1 cut(s) 1072
Eco88I CYCGRG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 910, 1315
FaeI CATG 3 cut(s) 568, 802, 1364
FaiI YATR 5 cut(s) 566, 606, 800, 961, 1362
FatI CATG 3 cut(s) 564, 798, 1360
FbaI TGATCA 1 cut(s) 865
FblI GTMKAC 1 cut(s) 843
FokI GGATG 2 cut(s) 613, 1243
FspBI CTAG 1 cut(s) 953
GlaI GCGC 3 cut(s) 1072, 1093, 1303
GsaI CCCAGC 1 cut(s) 1350
HaeII RGCGCY 2 cut(s) 1074, 1095
HaeIII GGCC 7 cut(s) 47, 306, 483, 683, 1152, 1242, 1299
HgaI GACGC 2 cut(s) 169, 356
HhaI GCGC 3 cut(s) 1073, 1094, 1304
Hin1II CATG 3 cut(s) 568, 802, 1364
Hin6I GCGC 3 cut(s) 1071, 1092, 1302
HinP1I GCGC 3 cut(s) 1071, 1092, 1302
HincII GTYRAC 6 cut(s) 159, 278, 371, 853, 904, 1114
HindII GTYRAC 6 cut(s) 159, 278, 371, 853, 904, 1114
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 5 cut(s) 725, 788, 871, 956, 992
HpaI GTTAAC 1 cut(s) 853
HphI GGTGA 2 cut(s) 821, 1006
Hpy188I TCNGA 4 cut(s) 528, 562, 821, 870
Hpy99I CGWCG 2 cut(s) 37, 498
HpyAV CCTTC 8 cut(s) 96, 435, 587, 1009, 1027, 1289, 1345, 1374
HpyCH4III ACNGT 5 cut(s) 55, 99, 432, 476, 841
HpyCH4IV ACGT 5 cut(s) 122, 406, 751, 969, 1053
HpyF3I CTNAG 3 cut(s) 818, 875, 1200
HpySE526I ACGT 5 cut(s) 122, 406, 751, 969, 1053
Hsp92II CATG 3 cut(s) 568, 802, 1364
HspAI GCGC 3 cut(s) 1071, 1092, 1302
Ksp22I TGATCA 1 cut(s) 865
KspAI GTTAAC 1 cut(s) 853
KspI CCGCGG 1 cut(s) 1240
Kzo9I GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
LmnI GCTCC 1 cut(s) 1342
LweI GCATC 5 cut(s) 709, 762, 1265, 1316, 1329
MaeI CTAG 1 cut(s) 953
MaeII ACGT 5 cut(s) 122, 406, 751, 969, 1053
MalI GATC 8 cut(s) 5, 116, 252, 414, 525, 867, 1206, 1356
MbiI CCGCTC 1 cut(s) 1262
MboI GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
MboII GAAGA 3 cut(s) 635, 922, 1412
MfeI CAATTG 2 cut(s) 176, 350
MflI RGATCY 2 cut(s) 250, 1354
MhlI GDGCHC 2 cut(s) 188, 346
MluCI AATT 6 cut(s) 176, 350, 578, 879, 926, 1409
MlyI GAGTC 3 cut(s) 797, 865, 950
MmeI TCCRAC 1 cut(s) 1364
MseI TTAA 4 cut(s) 237, 245, 852, 965
MslI CAYNNNNRTG 3 cut(s) 714, 717, 803
MspA1I CMGCKG 1 cut(s) 1239
MspR9I CCNGG 2 cut(s) 912, 1317
MunI CAATTG 2 cut(s) 176, 350
Mva1269I GAATGC 1 cut(s) 1269
MvaI CCWGG 2 cut(s) 912, 1317
MvnI CGCG 4 cut(s) 648, 1239, 1302, 1304
NdeII GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
NlaIII CATG 3 cut(s) 568, 802, 1364
NlaIV GGNNCC 3 cut(s) 84, 446, 1356
NspI RCATGY 1 cut(s) 568
OliI CACNNNNGTG 1 cut(s) 714
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 1360
PciI ACATGT 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 975
PctI GAATGC 1 cut(s) 1269
PfeI GAWTC 2 cut(s) 725, 992
PflMI CCANNNNNTGG 1 cut(s) 1346
PfoI TCCNGGA 1 cut(s) 910
PleI GAGTC 3 cut(s) 796, 865, 950
PpsI GAGTC 3 cut(s) 796, 865, 950
PscI ACATGT 1 cut(s) 564
PshBI ATTAAT 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 969
Psp6I CCWGG 2 cut(s) 910, 1315
PspFI CCCAGC 1 cut(s) 1346
PspGI CCWGG 2 cut(s) 910, 1315
PspN4I GGNNCC 3 cut(s) 84, 446, 1356
PspPI GGNCC 4 cut(s) 19, 46, 481, 508
PspXI VCTCGAGB 1 cut(s) 215
PsrI GAACNNNNNNTAC 2 cut(s) 530, 562
PstI CTGCAG 2 cut(s) 213, 832
PsuI RGATCY 2 cut(s) 250, 1354
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
RseI CAYNNNNRTG 3 cut(s) 714, 717, 803
SacII CCGCGG 1 cut(s) 1240
SaqAI TTAA 4 cut(s) 237, 245, 852, 965
Sau3AI GATC 8 cut(s) 3, 114, 250, 412, 523, 865, 1204, 1354
Sau96I GGNCC 4 cut(s) 19, 46, 481, 508
SbfI CCTGCAGG 1 cut(s) 832
SchI GAGTC 3 cut(s) 797, 865, 950
ScrFI CCNGG 2 cut(s) 912, 1317
SdaI CCTGCAGG 1 cut(s) 832
SduI GDGCHC 2 cut(s) 188, 346
SfaNI GCATC 5 cut(s) 709, 762, 1265, 1316, 1329
SfcI CTRYAG 2 cut(s) 209, 828
Sfr274I CTCGAG 1 cut(s) 215
Sfr303I CCGCGG 1 cut(s) 1240
SgrBI CCGCGG 1 cut(s) 1240
SinI GGWCC 2 cut(s) 19, 508
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 3 cut(s) 714, 717, 803
SmlI CTYRAG 8 cut(s) 68, 215, 266, 458, 588, 611, 890, 945
SmoI CTYRAG 8 cut(s) 68, 215, 266, 458, 588, 611, 890, 945
Sse8387I CCTGCAGG 1 cut(s) 832
Sse9I AATT 6 cut(s) 176, 350, 578, 879, 926, 1409
SsiI CCGC 9 cut(s) 648, 1117, 1128, 1231, 1237, 1239, 1260, 1300, 1304
SspI AATATT 1 cut(s) 1006
SspMI CTAG 1 cut(s) 953
StyD4I CCNGG 2 cut(s) 910, 1315
TaaI ACNGT 5 cut(s) 55, 99, 432, 476, 841
TaiI ACGT 5 cut(s) 125, 409, 754, 972, 1056
TaqI TCGA 5 cut(s) 35, 216, 493, 678, 1163
TasI AATT 6 cut(s) 176, 350, 578, 879, 926, 1409
TatI WGTACW 1 cut(s) 761
TauI GCSGC 5 cut(s) 651, 1131, 1242, 1302, 1307
TfiI GAWTC 2 cut(s) 725, 992
Tru1I TTAA 4 cut(s) 237, 245, 852, 965
Tru9I TTAA 4 cut(s) 237, 245, 852, 965
TscAI CASTG 7 cut(s) 102, 207, 332, 437, 1033, 1189, 1288
TspDTI ATGAA 2 cut(s) 551, 645
TspRI CASTG 7 cut(s) 102, 207, 332, 437, 1033, 1189, 1288
Van91I CCANNNNNTGG 1 cut(s) 1346
VneI GTGCAC 2 cut(s) 184, 342
VpaK11BI GGWCC 2 cut(s) 19, 508
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 2 cut(s) 578, 926
XceI RCATGY 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.