Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Forward (+)

39401585 .. 39403077

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTGAGACATTGCACCTGTACAATGTTGATGCAAGACAACAAAGAGTCGTTCAACATGGAAATGGGTGATGTCCTCAGAGTTCCTGCAGGAGCTACCGTCTACCTTGTTAACAACAACAATGATCAGACTCTAAGAATTGCAAAGCTCAAGCAGCCAGTCAACACTCCTGGACGATTTGAGGAATTCTTCCCTGGAAGTTCTCAAGACCTAGACTCATACTTCAACGTTTTCAGCGATGACATTCTTGAATCAGCCTTCAATACCCCAAGCGATCAGCTACAGAGGGGTGTTTGGACAACAACAGCAGAAGAGGCAAGGCATGGTGATGAGGGCATCACCACAACAACTCCAGGCATTGAGTCAGCACGCTTCTTCTCCCCGGGAGCAAAGGCCGTCAGTCTGGCAAGGGAAGCTATGATGCTGCCACACTACAATTCTAAAGCAATATTCGTGGTGCTGGTTGTGGAAGGAAGCGGACGGGTCGAGATGGCATGCCCACACATGGCAAGCCAGAGCCAAATGGGTGAGGAAGAAGTAGAACAACAAGGAGAACAGGTGAAGGTCACAGCTGATGTATCAGAGGGTGATGTTTTCGTTGTCCCAGCAGGTCATCCCATTGCCATAGTTGCCCAAAACCAAGAATTGAAAATGTTGGGATTTGGAATCAATGCCCAAAACAACAAGAGGAACTTCATTGCAGGGAGAGAGGCTAACCCGATTAGGGAGATGGAGAGAGAGGCTAAGCAATTGACCTTCGGGCAAGAGATGGAGCAGATCATCAACAGGCAGAGGGAATCCTATTTCGCCCCGACTGGGCAGAGCCAGCAGCAGAGAGGAGGCAAAGACGAGCCCTTATCTTCAATTTTGGCATTTGCAGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

295

Amino Acids

32.65

Weight (kDa)

4.91

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	132 - 246	1.4e-18	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	477
AclI	AACGTT	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	3 cut(s)	505, 724, 816
AgsI	TTSAA	6 cut(s)	55, 226, 251, 262, 649, 864
AjnI	CCWGG	3 cut(s)	169, 193, 352
AluBI	AGCT	5 cut(s)	95, 148, 280, 416, 572
AluI	AGCT	5 cut(s)	95, 148, 280, 416, 572
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	154, 424, 829
ApoI	RAATTY	1 cut(s)	185
AsuC2I	CCSGG	2 cut(s)	383, 384
AsuHPI	GGTGA	7 cut(s)	16, 80, 331, 338, 539, 571, 599
AvaI	CYCGRG	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	166, 411, 841
BccI	CCATC	3 cut(s)	484, 724, 763
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	3 cut(s)	171, 195, 354
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	2 cut(s)	383, 384
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	2 cut(s)	87, 281
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	3 cut(s)	155, 425, 830
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	3 cut(s)	156, 426, 831
Bme1390I	CCNGG	5 cut(s)	171, 195, 354, 383, 384
BmeT110I	CYCGRG	1 cut(s)	382
BmrFI	CCNGG	5 cut(s)	171, 195, 354, 383, 384
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	3 cut(s)	21, 345, 411
BmuI	ACTGGG	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	134, 189
BpuMI	CCSGG	2 cut(s)	383, 384
BsaJI	CCNNGG	3 cut(s)	193, 381, 382
BsaXI	ACNNNNNCTCC	6 cut(s)	84, 114, 334, 364, 543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 724, 816
Bse1I	ACTGG	2 cut(s)	158, 820
Bse3DI	GCAATG	3 cut(s)	10, 618, 696
BseBI	CCWGG	3 cut(s)	171, 195, 354
BseDI	CCNNGG	3 cut(s)	193, 381, 382
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	3 cut(s)	505, 724, 816
BseMI	GCAATG	3 cut(s)	10, 618, 696
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	2 cut(s)	158, 820
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	3 cut(s)	166, 411, 841
BseYI	CCCAGC	1 cut(s)	604
BshFI	GGCC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	3 cut(s)	505, 724, 816
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	124, 274, 777
Bsp1720I	GCTNAGC	1 cut(s)	744
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	599
BsrDI	GCAATG	3 cut(s)	10, 618, 696
BsrGI	TGTACA	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	158, 820
BssECI	CCNNGG	3 cut(s)	193, 381, 382
BssMI	GATC	3 cut(s)	124, 274, 777
Bst2UI	CCWGG	3 cut(s)	171, 195, 354
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	20
BstC8I	GCNNGC	5 cut(s)	370, 496, 511, 827, 880
BstDEI	CTNAG	3 cut(s)	77, 134, 744
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	3 cut(s)	127, 277, 780
BstMBI	GATC	3 cut(s)	124, 274, 777
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 314, 413, 629, 826
BstNI	CCWGG	3 cut(s)	171, 195, 354
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	5 cut(s)	169, 193, 352, 381, 382
BstSFI	CTRYAG	2 cut(s)	87, 281
BstV1I	GCAGC	3 cut(s)	166, 411, 841
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	5 cut(s)	370, 496, 511, 827, 880
Cfr9I	CCCGGG	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	4 cut(s)	58, 323, 495, 505
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	77, 134, 744
DpnI	GATC	3 cut(s)	126, 276, 779
DpnII	GATC	3 cut(s)	124, 274, 777
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	3 cut(s)	169, 193, 352
EcoT38I	GRGCYC	1 cut(s)	855
FaeI	CATG	4 cut(s)	61, 326, 498, 508
FaiI	YATR	7 cut(s)	59, 220, 324, 419, 496, 506, 626
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	4 cut(s)	57, 322, 494, 504
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	155, 425, 830
FokI	GGATG	1 cut(s)	600
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	3 cut(s)	155, 425, 830
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	3 cut(s)	155, 425, 830
GsaI	CCCAGC	1 cut(s)	608
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	4 cut(s)	61, 326, 498, 508
HincII	GTYRAC	2 cut(s)	112, 163
HindII	GTYRAC	2 cut(s)	112, 163
HinfI	GANTC	7 cut(s)	47, 130, 215, 251, 362, 666, 797
HpaI	GTTAAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	7 cut(s)	16, 80, 331, 338, 539, 571, 599
Hpy166II	GTNNAC	3 cut(s)	103, 112, 163
Hpy188I	TCNGA	3 cut(s)	80, 129, 583
Hpy188III	TCNNGA	3 cut(s)	206, 248, 487
Hpy8I	GTNNAC	3 cut(s)	103, 112, 163
HpyAV	CCTTC	4 cut(s)	268, 464, 556, 766
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	6 cut(s)	15, 34, 89, 143, 701, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 314, 413, 629, 826
HpyF3I	CTNAG	3 cut(s)	77, 134, 744
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	61, 326, 498, 508
Ksp22I	TGATCA	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	124, 274, 777
LmnI	GCTCC	3 cut(s)	92, 386, 772
Lsp1109I	GCAGC	3 cut(s)	166, 411, 841
LweI	GCATC	3 cut(s)	21, 345, 411
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	3 cut(s)	126, 276, 779
MboI	GATC	3 cut(s)	124, 274, 777
MboII	GAAGA	5 cut(s)	181, 323, 367, 545, 852
MfeI	CAATTG	1 cut(s)	749
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	6 cut(s)	138, 185, 436, 644, 749, 864
MlyI	GAGTC	4 cut(s)	56, 124, 209, 371
MseI	TTAA	2 cut(s)	111, 886
MslI	CAYNNNNRTG	2 cut(s)	62, 327
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	5 cut(s)	171, 195, 354, 383, 384
MunI	CAATTG	1 cut(s)	749
MvaI	CCWGG	3 cut(s)	171, 195, 354
MwoI	GCNNNNNNNGC	5 cut(s)	154, 314, 413, 629, 826
NciI	CCSGG	2 cut(s)	383, 384
NdeII	GATC	3 cut(s)	124, 274, 777
NlaIII	CATG	4 cut(s)	61, 326, 498, 508
NmuCI	GTSAC	1 cut(s)	565
NspI	RCATGY	1 cut(s)	498
PaeI	GCATGC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	251, 666, 797
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	156, 426, 831
PleI	GAGTC	4 cut(s)	55, 124, 209, 370
PpsI	GAGTC	4 cut(s)	55, 124, 209, 370
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	169, 193, 352
PspFI	CCCAGC	1 cut(s)	604
PspGI	CCWGG	3 cut(s)	169, 193, 352
PstI	CTGCAG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	2 cut(s)	62, 327
SaqAI	TTAA	2 cut(s)	111, 886
SatI	GCNGC	3 cut(s)	155, 425, 830
Sau3AI	GATC	3 cut(s)	124, 274, 777
SbfI	CCTGCAGG	1 cut(s)	91
SchI	GAGTC	4 cut(s)	56, 124, 209, 371
ScrFI	CCNGG	5 cut(s)	171, 195, 354, 383, 384
SdaI	CCTGCAGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	3 cut(s)	21, 345, 411
SfcI	CTRYAG	2 cut(s)	87, 281
SmaI	CCCGGG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	62, 327
SmlI	CTYRAG	2 cut(s)	149, 204
SmoI	CTYRAG	2 cut(s)	149, 204
SphI	GCATGC	1 cut(s)	498
Sse8387I	CCTGCAGG	1 cut(s)	91
Sse9I	AATT	6 cut(s)	138, 185, 436, 644, 749, 864
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	5 cut(s)	169, 193, 352, 381, 382
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	486
TasI	AATT	6 cut(s)	138, 185, 436, 644, 749, 864
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	251, 666, 797
Tru1I	TTAA	2 cut(s)	111, 886
Tru9I	TTAA	2 cut(s)	111, 886
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	154, 424, 829
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	1 cut(s)	685
TspMI	CCCGGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	498
XmaI	CCCGGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.