Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Reverse (-)

12654055 .. 12654470

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGATCAATTTCAACGCTTGGCTTCCTTTCTTGTTGTTGGTGTCTTCTCTTTTCCTTGCTTTCTCCGTGTCTTCCACTCTTGGTCTAGATAAAGACCAGCAATGTCAACAAGAATGTATGGACTTCCAAGGCCTACCAAAGAGCTCCGCATGTTTGGCCCGATGCAAGAATATGGGGCCCTGGTCGGGTCCTCCGGTTGCTGGCGGGCTGGTGTGGTACAGCCAATCTCATGGTCAGGAATGCCGACAGGAGTGTGAGAAGCAGGGAACACGGGTCCCGCTGGAACATTGTCAAAGGCAGTGCATCCAGCAACGTCAGTTCGAGCAGTGCCACAAACAATGGCAACAGATCATTCAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

7.53

Isoelectric Point (pI)

71.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	150, 207, 281
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	188, 203
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw21I	GWGCWC	1 cut(s)	149
AoxI	GGCC	3 cut(s)	133, 159, 179
ApaI	GGGCCC	1 cut(s)	183
AspS9I	GGNCC	5 cut(s)	160, 179, 180, 191, 277
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	191, 277
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	149, 183
BbsI	GAAGAC	2 cut(s)	39, 66
Bbv12I	GWGCWC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	6
BfaI	CTAG	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	191, 277
BmgT120I	GGNCC	5 cut(s)	160, 179, 180, 191, 277
BmiI	GGNNCC	5 cut(s)	180, 181, 192, 278, 279
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	155, 315
BpiI	GAAGAC	2 cut(s)	39, 66
BsaJI	CCNNGG	2 cut(s)	130, 182
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 203
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	130, 182
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	188, 203
BseMI	GCAATG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	183
BshFI	GGCC	3 cut(s)	135, 161, 181
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	188, 203
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	135, 161, 181
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	149, 183
Bsp143I	GATC	2 cut(s)	6, 351
BspACI	CCGC	3 cut(s)	150, 207, 281
BspANI	GGCC	3 cut(s)	135, 161, 181
BspLI	GGNNCC	5 cut(s)	180, 181, 192, 278, 279
BsrDI	GCAATG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	130, 182
BssMI	GATC	2 cut(s)	6, 351
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	205, 209
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	2 cut(s)	9, 354
BstMBI	GATC	2 cut(s)	6, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	183
BstV2I	GAAGAC	2 cut(s)	39, 66
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	135, 161, 181
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	2 cut(s)	308, 335
BtsIMutI	CAGTG	2 cut(s)	308, 335
Cac8I	GCNNGC	2 cut(s)	205, 209
Cfr13I	GGNCC	5 cut(s)	160, 179, 180, 191, 277
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	153, 233
CviJI	RGCY	7 cut(s)	25, 135, 147, 161, 181, 211, 225
CviKI_1	RGCY	7 cut(s)	25, 135, 147, 161, 181, 211, 225
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	2 cut(s)	8, 353
DpnII	GATC	2 cut(s)	6, 351
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	149, 183
Eco47I	GGWCC	2 cut(s)	191, 277
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	4 cut(s)	179, 180, 191, 277
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	2 cut(s)	149, 183
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	2 cut(s)	156, 236
FaiI	YATR	4 cut(s)	122, 154, 176, 234
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	152, 232
FauI	CCCGC	2 cut(s)	200, 288
FbaI	TGATCA	1 cut(s)	6
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	149, 183
FspBI	CTAG	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	135, 161, 181
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	2 cut(s)	156, 236
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	89, 239, 363
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	168, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	156, 236
KflI	GGGWCCC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	6, 351
LmnI	GCTCC	1 cut(s)	152
LweI	GCATC	2 cut(s)	155, 315
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	316
MalI	GATC	2 cut(s)	8, 353
MboI	GATC	2 cut(s)	6, 351
MboII	GAAGA	2 cut(s)	39, 66
MhlI	GDGCHC	2 cut(s)	149, 183
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	2 cut(s)	6, 351
NlaIII	CATG	2 cut(s)	156, 236
NlaIV	GGNNCC	5 cut(s)	180, 181, 192, 278, 279
NspI	RCATGY	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	248
PpuMI	RGGWCCY	2 cut(s)	191, 277
Psp124BI	GAGCTC	1 cut(s)	149
Psp5II	RGGWCCY	2 cut(s)	191, 277
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	5 cut(s)	180, 181, 192, 278, 279
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	5 cut(s)	160, 179, 180, 191, 277
PspPPI	RGGWCCY	2 cut(s)	191, 277
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	6, 351
Sau96I	GGNCC	5 cut(s)	160, 179, 180, 191, 277
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	2 cut(s)	149, 183
SetI	ASST	2 cut(s)	149, 319
SfaNI	GCATC	2 cut(s)	155, 315
SinI	GGWCC	2 cut(s)	191, 277
Sse9I	AATT	1 cut(s)	10
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	3 cut(s)	150, 207, 281
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	10
TscAI	CASTG	2 cut(s)	308, 335
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	308, 335
VpaK11BI	GGWCC	2 cut(s)	191, 277
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.