Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNMT1-RFD | PF12047 | 11 - 132 | 1e-09 | Cytosine specific DNA methyltransferase replication foci domain |
| PHD_NSD | PF22908 | 273 - 342 | 5e-19 | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger |
| PHDvar_NSD | PF23004 | 344 - 380 | 7.7e-06 | Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2236 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1852, 1879 |
| AatII | GACGTC | 1 cut(s) | 1850 |
| Acc36I | ACCTGC | 1 cut(s) | 2236 |
| AccB1I | GGYRCC | 2 cut(s) | 696, 731 |
| AccI | GTMKAC | 3 cut(s) | 1213, 1677, 2069 |
| AciI | CCGC | 4 cut(s) | 153, 728, 909, 2828 |
| AclWI | GGATC | 6 cut(s) | 263, 441, 745, 1547, 2603, 2873 |
| AcoI | YGGCCR | 1 cut(s) | 498 |
| AcsI | RAATTY | 8 cut(s) | 169, 790, 1250, 1280, 1364, 2409, 2567, 2647 |
| AcuI | CTGAAG | 5 cut(s) | 405, 573, 993, 1740, 2078 |
| AcyI | GRCGYC | 1 cut(s) | 1847 |
| AdeI | CACNNNGTG | 2 cut(s) | 334, 932 |
| AfaI | GTAC | 5 cut(s) | 41, 1109, 1560, 2049, 2728 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 449, 908, 1129, 2478, 2483, 2789 |
| AflII | CTTAAG | 1 cut(s) | 1436 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 15 |
| AhlI | ACTAGT | 1 cut(s) | 1570 |
| AjnI | CCWGG | 6 cut(s) | 2175, 2262, 2476, 2788, 2796, 2821 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1521, 1553, 2394, 2426 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 835, 867 |
| Alw21I | GWGCWC | 7 cut(s) | 321, 1310, 1747, 1971, 2383, 2438, 2782 |
| Alw26I | GTCTC | 6 cut(s) | 76, 106, 1374, 1675, 1865, 2370 |
| Alw44I | GTGCAC | 2 cut(s) | 317, 2434 |
| AlwI | GGATC | 6 cut(s) | 263, 441, 745, 1547, 2603, 2873 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 875, 2557 |
| Ama87I | CYCGRG | 2 cut(s) | 2255, 2515 |
| AoxI | GGCC | 2 cut(s) | 410, 498 |
| ApaLI | GTGCAC | 2 cut(s) | 317, 2434 |
| ApeKI | GCWGC | 4 cut(s) | 875, 1032, 2708, 2830 |
| ApoI | RAATTY | 8 cut(s) | 169, 790, 1250, 1280, 1364, 2409, 2567, 2647 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1405, 1711, 1930, 2155 |
| AspS9I | GGNCC | 3 cut(s) | 1270, 2771, 2825 |
| AsuHPI | GGTGA | 7 cut(s) | 119, 368, 464, 653, 2155, 2260, 2342 |
| AvaI | CYCGRG | 2 cut(s) | 2255, 2515 |
| AvaII | GGWCC | 3 cut(s) | 1270, 2771, 2825 |
| AxyI | CCTNAGG | 2 cut(s) | 701, 868 |
| BaeGI | GKGCMC | 2 cut(s) | 321, 2438 |
| BalI | TGGCCA | 1 cut(s) | 500 |
| BanI | GGYRCC | 2 cut(s) | 696, 731 |
| BanII | GRGCYC | 1 cut(s) | 1971 |
| BauI | CACGAG | 1 cut(s) | 2440 |
| BbsI | GAAGAC | 4 cut(s) | 524, 1334, 1475, 1634 |
| Bbv12I | GWGCWC | 7 cut(s) | 321, 1310, 1747, 1971, 2383, 2438, 2782 |
| BbvCI | CCTCAGC | 1 cut(s) | 879 |
| BbvI | GCAGC | 4 cut(s) | 862, 1019, 2695, 2842 |
| BceAI | ACGGC | 1 cut(s) | 2063 |
| BciT130I | CCWGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| BciVI | GTATCC | 3 cut(s) | 541, 907, 2260 |
| BcoDI | GTCTC | 6 cut(s) | 76, 106, 1374, 1675, 1865, 2370 |
| BcuI | ACTAGT | 1 cut(s) | 1570 |
| BfaI | CTAG | 7 cut(s) | 558, 1163, 1473, 1571, 2289, 2636, 2724 |
| BfmI | CTRYAG | 4 cut(s) | 1428, 1674, 1915, 2846 |
| BfrI | CTTAAG | 1 cut(s) | 1436 |
| BfuAI | ACCTGC | 1 cut(s) | 2236 |
| BfuI | GTATCC | 3 cut(s) | 541, 907, 2260 |
| BisI | GCNGC | 4 cut(s) | 876, 1033, 2709, 2831 |
| BlsI | GCNGC | 4 cut(s) | 877, 1034, 2710, 2832 |
| BmcAI | AGTACT | 1 cut(s) | 2728 |
| Bme1390I | CCNGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| Bme18I | GGWCC | 3 cut(s) | 1270, 2771, 2825 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 15 |
| BmeT110I | CYCGRG | 2 cut(s) | 2255, 2515 |
| BmgT120I | GGNCC | 3 cut(s) | 1270, 2771, 2825 |
| BmiI | GGNNCC | 6 cut(s) | 151, 698, 733, 853, 1271, 2261 |
| BmrFI | CCNGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| BmrI | ACTGGG | 1 cut(s) | 2096 |
| BmsI | GCATC | 6 cut(s) | 14, 774, 2266, 2356, 2410, 2743 |
| BmuI | ACTGGG | 1 cut(s) | 2096 |
| BpiI | GAAGAC | 4 cut(s) | 524, 1334, 1475, 1634 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1693, 1725 |
| BpmI | CTGGAG | 1 cut(s) | 2159 |
| Bpu10I | CCTNAGC | 2 cut(s) | 478, 879 |
| BpuEI | CTTGAG | 1 cut(s) | 1001 |
| Bsa29I | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2340 |
| BsaHI | GRCGYC | 1 cut(s) | 1847 |
| BsaI | GGTCTC | 1 cut(s) | 1675 |
| BsaJI | CCNNGG | 5 cut(s) | 240, 272, 1127, 1410, 2477 |
| BsaWI | WCCGGW | 1 cut(s) | 2120 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 91, 121, 1371, 1401 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 449, 908, 1129, 2478, 2483, 2789 |
| Bse1I | ACTGG | 3 cut(s) | 826, 2091, 2214 |
| Bse21I | CCTNAGG | 2 cut(s) | 701, 868 |
| Bse3DI | GCAATG | 1 cut(s) | 2494 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2340 |
| BseBI | CCWGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| BseCI | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| BseDI | CCNNGG | 5 cut(s) | 240, 272, 1127, 1410, 2477 |
| BseJI | GATNNNNATC | 1 cut(s) | 2340 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 449, 908, 1129, 2478, 2483, 2789 |
| BseMI | GCAATG | 1 cut(s) | 2494 |
| BseMII | CTCAG | 8 cut(s) | 213, 583, 711, 870, 882, 2181, 2232, 2549 |
| BseNI | ACTGG | 3 cut(s) | 826, 2091, 2214 |
| BseRI | GAGGAG | 2 cut(s) | 737, 1717 |
| BseSI | GKGCMC | 2 cut(s) | 321, 2438 |
| BseXI | GCAGC | 4 cut(s) | 862, 1019, 2695, 2842 |
| BseYI | CCCAGC | 2 cut(s) | 1991, 2357 |
| Bsh1285I | CGRYCG | 1 cut(s) | 913 |
| BshFI | GGCC | 2 cut(s) | 412, 500 |
| BshNI | GGYRCC | 2 cut(s) | 696, 731 |
| BshVI | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| BsiEI | CGRYCG | 1 cut(s) | 913 |
| BsiHKAI | GWGCWC | 7 cut(s) | 321, 1310, 1747, 1971, 2383, 2438, 2782 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2255, 2515 |
| BsiSI | CCGG | 2 cut(s) | 735, 2121 |
| BslFI | GGGAC | 4 cut(s) | 1283, 1840, 2551, 2564 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 449, 908, 1129, 2478, 2483, 2789 |
| BsmAI | GTCTC | 6 cut(s) | 76, 106, 1374, 1675, 1865, 2370 |
| BsmFI | GGGAC | 4 cut(s) | 1283, 1840, 2551, 2564 |
| BsnI | GGCC | 2 cut(s) | 412, 500 |
| Bso31I | GGTCTC | 1 cut(s) | 1675 |
| BsoBI | CYCGRG | 2 cut(s) | 2255, 2515 |
| Bsp1286I | GDGCHC | 7 cut(s) | 321, 1310, 1747, 1971, 2383, 2438, 2782 |
| BspACI | CCGC | 4 cut(s) | 153, 728, 909, 2828 |
| BspANI | GGCC | 2 cut(s) | 412, 500 |
| BspCNI | CTCAG | 8 cut(s) | 214, 582, 712, 871, 881, 2182, 2233, 2550 |
| BspDI | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| BspLI | GGNNCC | 6 cut(s) | 151, 698, 733, 853, 1271, 2261 |
| BspMI | ACCTGC | 1 cut(s) | 2236 |
| BspPI | GGATC | 6 cut(s) | 263, 441, 745, 1547, 2603, 2873 |
| BspQI | GCTCTTC | 4 cut(s) | 210, 272, 1505, 2211 |
| BspT107I | GGYRCC | 2 cut(s) | 696, 731 |
| BspTI | CTTAAG | 1 cut(s) | 1436 |
| BspTNI | GGTCTC | 1 cut(s) | 1675 |
| BsrDI | GCAATG | 1 cut(s) | 2494 |
| BsrI | ACTGG | 3 cut(s) | 826, 2091, 2214 |
| BssECI | CCNNGG | 5 cut(s) | 240, 272, 1127, 1410, 2477 |
| BssNAI | GTATAC | 1 cut(s) | 1214 |
| BssNI | GRCGYC | 1 cut(s) | 1847 |
| BssSI | CACGAG | 1 cut(s) | 2440 |
| BssT1I | CCWWGG | 2 cut(s) | 1127, 1410 |
| Bst1107I | GTATAC | 1 cut(s) | 1214 |
| Bst2BI | CACGAG | 1 cut(s) | 2440 |
| Bst2UI | CCWGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| Bst4CI | ACNGT | 9 cut(s) | 295, 316, 809, 1211, 1261, 1669, 1975, 2047, 2378 |
| BstACI | GRCGYC | 1 cut(s) | 1847 |
| BstAFI | CTTAAG | 1 cut(s) | 1436 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2433 |
| BstC8I | GCNNGC | 4 cut(s) | 1091, 1124, 2425, 2590 |
| BstEII | GGTNACC | 1 cut(s) | 2792 |
| BstMAI | GTCTC | 6 cut(s) | 76, 106, 1374, 1675, 1865, 2370 |
| BstMCI | CGRYCG | 1 cut(s) | 913 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 268, 1430, 1966, 2251, 2285, 2433 |
| BstNI | CCWGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| BstNSI | RCATGY | 3 cut(s) | 185, 442, 1093 |
| BstPI | GGTNACC | 1 cut(s) | 2792 |
| BstSCI | CCNGG | 6 cut(s) | 2175, 2262, 2476, 2788, 2796, 2821 |
| BstSFI | CTRYAG | 4 cut(s) | 1428, 1674, 1915, 2846 |
| BstSLI | GKGCMC | 2 cut(s) | 321, 2438 |
| BstV1I | GCAGC | 4 cut(s) | 862, 1019, 2695, 2842 |
| BstV2I | GAAGAC | 4 cut(s) | 524, 1334, 1475, 1634 |
| BstX2I | RGATCY | 2 cut(s) | 737, 2608 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 496, 959 |
| BstYI | RGATCY | 2 cut(s) | 737, 2608 |
| BstZ17I | GTATAC | 1 cut(s) | 1214 |
| Bsu15I | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| Bsu36I | CCTNAGG | 2 cut(s) | 701, 868 |
| BsuI | GTATCC | 3 cut(s) | 541, 907, 2260 |
| BsuRI | GGCC | 2 cut(s) | 412, 500 |
| BsuTUI | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| BtsI | GCAGTG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 6 cut(s) | 291, 319, 833, 1971, 2207, 2374 |
| BveI | ACCTGC | 1 cut(s) | 2236 |
| Cac8I | GCNNGC | 4 cut(s) | 1091, 1124, 2425, 2590 |
| CaiI | CAGNNNCTG | 2 cut(s) | 875, 2557 |
| Cfr13I | GGNCC | 3 cut(s) | 1270, 2771, 2825 |
| ClaI | ATCGAT | 3 cut(s) | 582, 627, 2868 |
| CsiI | ACCWGGT | 1 cut(s) | 2788 |
| Csp6I | GTAC | 5 cut(s) | 40, 1108, 1559, 2048, 2727 |
| CviQI | GTAC | 5 cut(s) | 40, 1108, 1559, 2048, 2727 |
| DraIII | CACNNNGTG | 2 cut(s) | 334, 932 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1852, 1879 |
| DriI | GACNNNNNGTC | 1 cut(s) | 15 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1852, 1879 |
| EaeI | YGGCCR | 1 cut(s) | 498 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 15 |
| Ecl136II | GAGCTC | 1 cut(s) | 1969 |
| Eco130I | CCWWGG | 2 cut(s) | 1127, 1410 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco24I | GRGCYC | 1 cut(s) | 1971 |
| Eco31I | GGTCTC | 1 cut(s) | 1675 |
| Eco32I | GATATC | 2 cut(s) | 470, 625 |
| Eco47I | GGWCC | 3 cut(s) | 1270, 2771, 2825 |
| Eco53kI | GAGCTC | 1 cut(s) | 1969 |
| Eco57I | CTGAAG | 5 cut(s) | 405, 573, 993, 1740, 2078 |
| Eco81I | CCTNAGG | 2 cut(s) | 701, 868 |
| Eco88I | CYCGRG | 2 cut(s) | 2255, 2515 |
| Eco91I | GGTNACC | 1 cut(s) | 2792 |
| EcoICRI | GAGCTC | 1 cut(s) | 1969 |
| EcoO65I | GGTNACC | 1 cut(s) | 2792 |
| EcoRI | GAATTC | 1 cut(s) | 1364 |
| EcoRII | CCWGG | 6 cut(s) | 2175, 2262, 2476, 2788, 2796, 2821 |
| EcoRV | GATATC | 2 cut(s) | 470, 625 |
| EcoT14I | CCWWGG | 2 cut(s) | 1127, 1410 |
| EcoT38I | GRGCYC | 1 cut(s) | 1971 |
| ErhI | CCWWGG | 2 cut(s) | 1127, 1410 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1915, 1947 |
| FaqI | GGGAC | 4 cut(s) | 1283, 1840, 2551, 2564 |
| FauI | CCCGC | 1 cut(s) | 721 |
| FauNDI | CATATG | 1 cut(s) | 1453 |
| FblI | GTMKAC | 3 cut(s) | 1213, 1677, 2069 |
| Fnu4HI | GCNGC | 4 cut(s) | 876, 1033, 2709, 2831 |
| FriOI | GRGCYC | 1 cut(s) | 1971 |
| Fsp4HI | GCNGC | 4 cut(s) | 876, 1033, 2709, 2831 |
| FspBI | CTAG | 7 cut(s) | 558, 1163, 1473, 1571, 2289, 2636, 2724 |
| GluI | GCNGC | 4 cut(s) | 876, 1033, 2709, 2831 |
| GsaI | CCCAGC | 2 cut(s) | 1995, 2361 |
| GsuI | CTGGAG | 1 cut(s) | 2159 |
| HaeIII | GGCC | 2 cut(s) | 412, 500 |
| HapII | CCGG | 2 cut(s) | 735, 2121 |
| Hin1I | GRCGYC | 1 cut(s) | 1847 |
| HincII | GTYRAC | 3 cut(s) | 20, 463, 2070 |
| HindII | GTYRAC | 3 cut(s) | 20, 463, 2070 |
| HindIII | AAGCTT | 2 cut(s) | 260, 1583 |
| HpaI | GTTAAC | 1 cut(s) | 463 |
| HpaII | CCGG | 2 cut(s) | 735, 2121 |
| HphI | GGTGA | 7 cut(s) | 119, 368, 464, 653, 2155, 2260, 2342 |
| Hpy166II | GTNNAC | 9 cut(s) | 20, 319, 463, 812, 1043, 1214, 1678, 2070, 2436 |
| Hpy8I | GTNNAC | 9 cut(s) | 20, 319, 463, 812, 1043, 1214, 1678, 2070, 2436 |
| HpyCH4III | ACNGT | 9 cut(s) | 295, 316, 809, 1211, 1261, 1669, 1975, 2047, 2378 |
| HpyCH4IV | ACGT | 2 cut(s) | 1847, 2114 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 268, 1430, 1966, 2251, 2285, 2433 |
| HpySE526I | ACGT | 2 cut(s) | 1847, 2114 |
| Hsp92I | GRCGYC | 1 cut(s) | 1847 |
| KspAI | GTTAAC | 1 cut(s) | 463 |
| LguI | GCTCTTC | 4 cut(s) | 210, 272, 1505, 2211 |
| LmnI | GCTCC | 3 cut(s) | 1429, 1750, 2824 |
| Lsp1109I | GCAGC | 4 cut(s) | 862, 1019, 2695, 2842 |
| LweI | GCATC | 6 cut(s) | 14, 774, 2266, 2356, 2410, 2743 |
| MabI | ACCWGGT | 1 cut(s) | 2788 |
| MaeI | CTAG | 7 cut(s) | 558, 1163, 1473, 1571, 2289, 2636, 2724 |
| MaeII | ACGT | 2 cut(s) | 1847, 2114 |
| MaeIII | GTNAC | 7 cut(s) | 659, 1071, 1390, 2093, 2330, 2467, 2792 |
| MfeI | CAATTG | 1 cut(s) | 2034 |
| MflI | RGATCY | 2 cut(s) | 737, 2608 |
| MhlI | GDGCHC | 7 cut(s) | 321, 1310, 1747, 1971, 2383, 2438, 2782 |
| MlsI | TGGCCA | 1 cut(s) | 500 |
| MluNI | TGGCCA | 1 cut(s) | 500 |
| MlyI | GAGTC | 4 cut(s) | 1862, 2246, 2586, 2708 |
| MmeI | TCCRAC | 2 cut(s) | 233, 2843 |
| Mox20I | TGGCCA | 1 cut(s) | 500 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1405, 1711, 1930, 2155 |
| MscI | TGGCCA | 1 cut(s) | 500 |
| MseI | TTAA | 5 cut(s) | 462, 1437, 1596, 2027, 2595 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2388 |
| Msp20I | TGGCCA | 1 cut(s) | 500 |
| MspA1I | CMGCKG | 4 cut(s) | 155, 1877, 2833, 2858 |
| MspCI | CTTAAG | 1 cut(s) | 1436 |
| MspI | CCGG | 2 cut(s) | 735, 2121 |
| MspR9I | CCNGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| MunI | CAATTG | 1 cut(s) | 2034 |
| MvaI | CCWGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 268, 1430, 1966, 2251, 2285, 2433 |
| NdeI | CATATG | 1 cut(s) | 1453 |
| NlaIV | GGNNCC | 6 cut(s) | 151, 698, 733, 853, 1271, 2261 |
| NmeAIII | GCCGAG | 1 cut(s) | 297 |
| NmuCI | GTSAC | 3 cut(s) | 659, 1390, 2330 |
| NspI | RCATGY | 3 cut(s) | 185, 442, 1093 |
| PaeI | GCATGC | 1 cut(s) | 1093 |
| PaqCI | CACCTGC | 1 cut(s) | 2236 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PciSI | GCTCTTC | 4 cut(s) | 210, 272, 1505, 2211 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1405, 1711, 1930, 2155 |
| PfeI | GAWTC | 8 cut(s) | 373, 485, 604, 1004, 1517, 1532, 1910, 2021 |
| PflFI | GACNNNGTC | 1 cut(s) | 2576 |
| PkrI | GCNGC | 4 cut(s) | 877, 1034, 2710, 2832 |
| PleI | GAGTC | 4 cut(s) | 1861, 2245, 2585, 2708 |
| PpsI | GAGTC | 4 cut(s) | 1861, 2245, 2585, 2708 |
| Psp124BI | GAGCTC | 1 cut(s) | 1971 |
| Psp6I | CCWGG | 6 cut(s) | 2175, 2262, 2476, 2788, 2796, 2821 |
| PspEI | GGTNACC | 1 cut(s) | 2792 |
| PspFI | CCCAGC | 2 cut(s) | 1991, 2357 |
| PspGI | CCWGG | 6 cut(s) | 2175, 2262, 2476, 2788, 2796, 2821 |
| PspN4I | GGNNCC | 6 cut(s) | 151, 698, 733, 853, 1271, 2261 |
| PspPI | GGNCC | 3 cut(s) | 1270, 2771, 2825 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 75, 107 |
| PstNI | CAGNNNCTG | 2 cut(s) | 875, 2557 |
| PsuI | RGATCY | 2 cut(s) | 737, 2608 |
| PsyI | GACNNNGTC | 1 cut(s) | 2576 |
| PvuII | CAGCTG | 3 cut(s) | 1877, 2833, 2858 |
| RsaI | GTAC | 5 cut(s) | 41, 1109, 1560, 2049, 2728 |
| RsaNI | GTAC | 5 cut(s) | 40, 1108, 1559, 2048, 2727 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2388 |
| SacI | GAGCTC | 1 cut(s) | 1971 |
| SalI | GTCGAC | 1 cut(s) | 2068 |
| SapI | GCTCTTC | 4 cut(s) | 210, 272, 1505, 2211 |
| SaqAI | TTAA | 5 cut(s) | 462, 1437, 1596, 2027, 2595 |
| SatI | GCNGC | 4 cut(s) | 876, 1033, 2709, 2831 |
| Sau96I | GGNCC | 3 cut(s) | 1270, 2771, 2825 |
| ScaI | AGTACT | 1 cut(s) | 2728 |
| SchI | GAGTC | 4 cut(s) | 1862, 2246, 2586, 2708 |
| ScrFI | CCNGG | 6 cut(s) | 2177, 2264, 2478, 2790, 2798, 2823 |
| SduI | GDGCHC | 7 cut(s) | 321, 1310, 1747, 1971, 2383, 2438, 2782 |
| SexAI | ACCWGGT | 1 cut(s) | 2788 |
| SfaNI | GCATC | 6 cut(s) | 14, 774, 2266, 2356, 2410, 2743 |
| SfcI | CTRYAG | 4 cut(s) | 1428, 1674, 1915, 2846 |
| SinI | GGWCC | 3 cut(s) | 1270, 2771, 2825 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2388 |
| SmlI | CTYRAG | 2 cut(s) | 980, 1436 |
| SmoI | CTYRAG | 2 cut(s) | 980, 1436 |
| SpeI | ACTAGT | 1 cut(s) | 1570 |
| SphI | GCATGC | 1 cut(s) | 1093 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SsiI | CCGC | 4 cut(s) | 153, 728, 909, 2828 |
| SspI | AATATT | 2 cut(s) | 942, 1405 |
| SspMI | CTAG | 7 cut(s) | 558, 1163, 1473, 1571, 2289, 2636, 2724 |
| SstI | GAGCTC | 1 cut(s) | 1971 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| StyD4I | CCNGG | 6 cut(s) | 2175, 2262, 2476, 2788, 2796, 2821 |
| StyI | CCWWGG | 2 cut(s) | 1127, 1410 |
| TaaI | ACNGT | 9 cut(s) | 295, 316, 809, 1211, 1261, 1669, 1975, 2047, 2378 |
| TaiI | ACGT | 2 cut(s) | 1850, 2117 |
| TatI | WGTACW | 2 cut(s) | 1558, 2726 |
| TfiI | GAWTC | 8 cut(s) | 373, 485, 604, 1004, 1517, 1532, 1910, 2021 |
| Tru1I | TTAA | 5 cut(s) | 462, 1437, 1596, 2027, 2595 |
| Tru9I | TTAA | 5 cut(s) | 462, 1437, 1596, 2027, 2595 |
| TscAI | CASTG | 6 cut(s) | 298, 326, 833, 1978, 2214, 2381 |
| TseFI | GTSAC | 3 cut(s) | 659, 1390, 2330 |
| TseI | GCWGC | 4 cut(s) | 875, 1032, 2708, 2830 |
| Tsp45I | GTSAC | 3 cut(s) | 659, 1390, 2330 |
| TspDTI | ATGAA | 9 cut(s) | 68, 69, 78, 539, 596, 701, 1013, 2184, 2229 |
| TspGWI | ACGGA | 2 cut(s) | 1392, 2748 |
| TspRI | CASTG | 6 cut(s) | 298, 326, 833, 1978, 2214, 2381 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2576 |
| Vha464I | CTTAAG | 1 cut(s) | 1436 |
| VneI | GTGCAC | 2 cut(s) | 317, 2434 |
| VpaK11BI | GGWCC | 3 cut(s) | 1270, 2771, 2825 |
| XapI | RAATTY | 8 cut(s) | 169, 790, 1250, 1280, 1364, 2409, 2567, 2647 |
| XceI | RCATGY | 3 cut(s) | 185, 442, 1093 |
| XmiI | GTMKAC | 3 cut(s) | 1213, 1677, 2069 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1405, 1711, 1930, 2155 |
| XspI | CTAG | 7 cut(s) | 558, 1163, 1473, 1571, 2289, 2636, 2724 |
| ZraI | GACGTC | 1 cut(s) | 1848 |
| ZrmI | AGTACT | 1 cut(s) | 2728 |