Rorug05G0451600

Protein TRANSPARENT TESTA 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
62439645 .. 62443816
4172 bp
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UTR
Exon/CDS
Intron
Rorug05G0451600.1

Sequence Viewer

Length: 648 bp
ATGGCTGCTCCACCAGCAAGGGCTAGAGCCGATTACGATTACCTCATAAAGCTTCTTTTGATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTTTGCGTTTCTCGGATGGTTCCTTCACCACTAGTTTCATAACAACCATTGGGATTGATTTTAAGATAAGGACCATTGAACTAGATGGAAAACGGATTAAGCTCCAAATTTGGGATACAGCTGGTCAGGAACGGTTCCGTACAATCACAACTGCTTACTATCGTGGAGCCATGGGGATTTTGCTGGTCTATGATGTTACAGATGAATCATCTTTCAACAACATTAGAAACTGGATTCGCAACATTGAACAGCATGCATCAGATAATGTCAACAAAATACTTGTAGGTAACAAGGCTGACATGGACGAAAGTAAAAGGGCTGTCCCTACCTCTAAGGGCCAAGCACTTGCTGACGAGTATGGGATCAAGTTCTTTGAAACTAGTGCAAAGACGAATCTCAACGTGGAGCAAGTTTTTTTCTCAATAGCACGAGACATTAAGCAACGGCTTGCAGACACTGATACTAGGGCTGAGCCAACCACAATCAAGATCAATCAACCTGACCAGGCAGGTGGAGCTGGTCAAGCTGCACAAAAGTCGGGTTGCTGTGCGTAA

Protein Analysis

215

Amino Acids

23.77

Weight (kDa)

8.38

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 16 - 143 5.3e-15 ADP-ribosylation factor family
Ras PF00071 17 - 178 3.1e-68 Ras family
Roc PF08477 17 - 131 5.7e-35 Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU PF00009 49 - 173 8e-07 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 593
Acc36I ACCTGC 1 cut(s) 593
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 4 cut(s) 173, 310, 341, 470
AhlI ACTAGT 2 cut(s) 125, 473
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 5 cut(s) 52, 196, 215, 611, 620
AluI AGCT 5 cut(s) 52, 196, 215, 611, 620
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 1 cut(s) 464
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 5, 620
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 165, 430
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 165
BauI CACGAG 1 cut(s) 522
BbvI GCAGC 1 cut(s) 607
BccI CCATC 2 cut(s) 104, 173
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 612, 646
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 519
BcuI ACTAGT 2 cut(s) 125, 473
BfaI CTAG 5 cut(s) 24, 126, 176, 474, 558
BfuAI ACCTGC 1 cut(s) 593
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 6, 621
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 2 cut(s) 7, 622
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 165, 430
BmiI GGNNCC 3 cut(s) 115, 230, 262
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 607
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 1 cut(s) 432
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 1 cut(s) 432
Bsp143I GATC 3 cut(s) 60, 456, 582
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 115, 230, 262
BspMI ACCTGC 1 cut(s) 593
BspPI GGATC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 60, 456, 582
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 348, 543
BstDEI CTNAG 2 cut(s) 426, 564
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 63, 459, 585
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 3 cut(s) 60, 456, 582
BstMWI GCNNNNNNNGC 3 cut(s) 14, 608, 617
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 597
BstV1I GCAGC 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 605
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 549
BveI ACCTGC 1 cut(s) 593
Cac8I GCNNGC 2 cut(s) 348, 543
CaiI CAGNNNCTG 1 cut(s) 551
Cfr13I GGNCC 2 cut(s) 165, 430
Csp6I GTAC 1 cut(s) 234
CviAII CATG 3 cut(s) 265, 347, 394
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 426, 564
DpnI GATC 3 cut(s) 62, 458, 584
DpnII GATC 3 cut(s) 60, 456, 582
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 268, 350, 397
FaiI YATR 7 cut(s) 47, 134, 266, 285, 348, 395, 453
FaqI GGGAC 1 cut(s) 401
FatI CATG 3 cut(s) 264, 346, 393
Fnu4HI GCNGC 2 cut(s) 6, 621
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 6, 621
FspBI CTAG 5 cut(s) 24, 126, 176, 474, 558
GluI GCNGC 2 cut(s) 6, 621
HaeIII GGCC 1 cut(s) 432
Hin1II CATG 3 cut(s) 268, 350, 397
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 299, 328, 487
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 109, 355
Hpy188III TCNNGA 2 cut(s) 221, 580
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 101, 127
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 350, 479, 545, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 608, 617
HpyF3I CTNAG 2 cut(s) 426, 564
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 3 cut(s) 268, 350, 397
Kzo9I GATC 3 cut(s) 60, 456, 582
LmnI GCTCC 5 cut(s) 13, 201, 260, 499, 608
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 359
MaeI CTAG 5 cut(s) 24, 126, 176, 474, 558
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 289, 380
MalI GATC 3 cut(s) 62, 458, 584
MboI GATC 3 cut(s) 60, 456, 582
MluCI AATT 1 cut(s) 201
MnlI CCTC 2 cut(s) 53, 433
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 3 cut(s) 156, 192, 531
MspA1I CMGCKG 2 cut(s) 72, 215
MspR9I CCNGG 1 cut(s) 599
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 3 cut(s) 14, 608, 617
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 60, 456, 582
NlaIII CATG 3 cut(s) 268, 350, 397
NlaIV GGNNCC 3 cut(s) 115, 230, 262
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 299, 328, 487
PkrI GCNGC 2 cut(s) 7, 622
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 115, 230, 262
PspPI GGNCC 2 cut(s) 165, 430
PstNI CAGNNNCTG 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 156, 192, 531
SatI GCNGC 2 cut(s) 6, 621
Sau3AI GATC 3 cut(s) 60, 456, 582
Sau96I GGNCC 2 cut(s) 165, 430
ScrFI CCNGG 1 cut(s) 599
SfaNI GCATC 1 cut(s) 359
SinI GGWCC 1 cut(s) 165
SpeI ACTAGT 2 cut(s) 125, 473
SphI GCATGC 1 cut(s) 350
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 72
SspMI CTAG 5 cut(s) 24, 126, 176, 474, 558
StyD4I CCNGG 1 cut(s) 597
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 498
TasI AATT 1 cut(s) 201
TfiI GAWTC 3 cut(s) 299, 328, 487
Tru1I TTAA 3 cut(s) 156, 192, 531
Tru9I TTAA 3 cut(s) 156, 192, 531
TscAI CASTG 1 cut(s) 556
TseI GCWGC 2 cut(s) 5, 620
TspDTI ATGAA 2 cut(s) 121, 312
TspGWI ACGGA 2 cut(s) 202, 221
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 350
XspI CTAG 5 cut(s) 24, 126, 176, 474, 558
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.