Rorug04G0050800

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
7831025 .. 7835648
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0050800.1

Sequence Viewer

Length: 1227 bp
ATGGAGAGCAAGGTCTTTGTCCAATACAACCACACCGATCCCTGTGCATTTGCGCGCTGGACTACCAAGGAAAGCTTCCAGTTCATGTCAGCCAGGCCTTGGCAACAAGTCATCGACTTTTATTCCGATGTGGTAAAGGGTCAGAAGCCCTTGTCTGCGTTGTTGGGTACTTCTTGTTTGAGTAAAAACAGAATTTACAATAGTGTAGAGTGTGTAAATTCTCAAAATAGGGGTGGGAGGTGGGCAAGACTGACGTTCAAGATTGTGGTTTCGTATCATGGGGGTTCCTTTGATGGGTGGCAAAAGCAGCCGGACCTCTACACTGTCCAAAGTGTTGTTGAACAATCTCTTGGGAAATTTGTTGATGAGAGGAAAGCCCAGATGCTGAAAGACAGAGGGTTGCCATTGGAAGGGGCTGCTACTGTCGCGGGACGGACCGATAAAGGAGTGACAGCCCTTAATCAAGTTTGTTCTTTCTATACTTGGAGAAAGGATGTGCAATCTCAAGATATTGCAGATTCTATAAATAGTGCAGCACCAGGAAAACTCAGGACAGTATCTGTTACTGAGGTGTCACGTGTATTCCATCCAAATTTTTCTGCCAAATGGAGGCGTTATTTGTATATGTTTCCATTTAATGATGATGAGGAGGACGGAGAACAAAGCAATGAGACTGGAGAGAATACTCAAAAATTTAAGATTAAAGATAATCAGCATGAAGTGGTATCTGATAAATGCAATGAGGAAAATGTTGGAAACTTAATCATCACTGATGACGTAGAGTTTGAAACTGAGAAGAAGCCACGGATGTTCAGCGTAAGCAGGGTGAACAAACTTTTACAGAAACTAGAAGGAAAGTTATTATCATATAAGCTATTTGCACGCGACACCAAAGCATCCAGAAATGAGGGTCCACCAACAGAGTGTTTTGTCTTCCATGCTCGAGCAAGAGAGTACAGATTACCGTGTTCGGAGCATGAAAAAGGGAGAAGGGTCATGTGTATCGAACTGGTTGCCAACCGATTCTTACGCAGGATGGTTCGGGTTCTTGTGGCAACCTCAATTAGGGAAGCCGCTGCAGGTGCAGATGAGGACGCATTGCTAAAACTGATGGATGCAACATGCAGACGTGCTACTGCTCCCCCAGCTCCACCCGATGGTTTATGCCTTGTTGATGTTGGTTATGAAGAATTCGATCCACTAGATTGCCTCATCTCGAAGGAGTAA

Protein Analysis

408

Amino Acids

46.37

Weight (kDa)

7.93

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_1 PF01416 330 - 396 6.1e-08 tRNA pseudouridine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1070
Acc36I ACCTGC 1 cut(s) 1070
AccB7I CCANNNNNTGG 2 cut(s) 99, 1157
AccII CGCG 3 cut(s) 55, 428, 885
AciI CCGC 2 cut(s) 428, 1074
AclWI GGATC 2 cut(s) 32, 1190
AcsI RAATTY 6 cut(s) 192, 217, 356, 592, 692, 1190
AcvI CACGTG 1 cut(s) 578
AfaI GTAC 2 cut(s) 169, 956
AfiI CCNNNNNNNGG 6 cut(s) 99, 294, 410, 609, 1065, 1157
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 3 cut(s) 259, 341, 788
AjiI CACGTC 1 cut(s) 1130
AjnI CCWGG 2 cut(s) 92, 538
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 333, 365
AluBI AGCT 3 cut(s) 75, 874, 1148
AluI AGCT 3 cut(s) 75, 874, 1148
Alw26I GTCTC 1 cut(s) 665
AlwI GGATC 2 cut(s) 32, 1190
AlwNI CAGNNNCTG 2 cut(s) 385, 560
Ama87I CYCGRG 1 cut(s) 942
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 307, 416, 533, 1076
ApoI RAATTY 6 cut(s) 192, 217, 356, 592, 692, 1190
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
AspLEI GCGC 2 cut(s) 55, 57
AspS9I GGNCC 3 cut(s) 313, 435, 911
AsuHPI GGTGA 1 cut(s) 838
AvaI CYCGRG 1 cut(s) 942
AvaII GGWCC 3 cut(s) 313, 435, 911
BbrPI CACGTG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 925
BbvI GCAGC 4 cut(s) 319, 403, 545, 1063
BccI CCATC 5 cut(s) 287, 594, 1030, 1105, 1151
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 995, 1029
BciT130I CCWGG 2 cut(s) 94, 540
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 2 cut(s) 848, 1202
BfmI CTRYAG 1 cut(s) 1077
BfuAI ACCTGC 1 cut(s) 1070
BisI GCNGC 5 cut(s) 308, 417, 534, 1074, 1077
BlsI GCNGC 5 cut(s) 309, 418, 535, 1075, 1078
Bme1390I CCNGG 2 cut(s) 94, 540
Bme18I GGWCC 3 cut(s) 313, 435, 911
BmeT110I CYCGRG 1 cut(s) 942
BmgBI CACGTC 1 cut(s) 1130
BmgT120I GGNCC 3 cut(s) 313, 435, 911
BmiI GGNNCC 2 cut(s) 286, 912
BmrFI CCNGG 2 cut(s) 94, 540
BmsI GCATC 3 cut(s) 372, 905, 1105
BpiI GAAGAC 1 cut(s) 925
BpmI CTGGAG 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 66, 98, 803
Bsc4I CCNNNNNNNGG 6 cut(s) 99, 294, 410, 609, 1065, 1157
Bse1I ACTGG 3 cut(s) 79, 679, 1014
Bse3DI GCAATG 3 cut(s) 673, 745, 1097
BseBI CCWGG 2 cut(s) 94, 540
BseDI CCNNGG 3 cut(s) 66, 98, 803
BseGI GGATG 6 cut(s) 499, 586, 813, 896, 1041, 1120
BseLI CCNNNNNNNGG 6 cut(s) 99, 294, 410, 609, 1065, 1157
BseMI GCAATG 3 cut(s) 673, 745, 1097
BseMII CTCAG 3 cut(s) 558, 562, 783
BseNI ACTGG 3 cut(s) 79, 679, 1014
BsePI GCGCGC 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 4 cut(s) 319, 403, 545, 1063
BseYI CCCAGC 1 cut(s) 1144
BsgI GTGCAG 2 cut(s) 552, 1104
Bsh1236I CGCG 3 cut(s) 55, 428, 885
BshFI GGCC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 942
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 6 cut(s) 99, 294, 410, 609, 1065, 1157
BsmAI GTCTC 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 942
Bsp143I GATC 2 cut(s) 37, 1195
BspACI CCGC 2 cut(s) 428, 1074
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 3 cut(s) 559, 561, 784
BspFNI CGCG 3 cut(s) 55, 428, 885
BspLI GGNNCC 2 cut(s) 286, 912
BspMAI CTGCAG 1 cut(s) 1081
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 2 cut(s) 32, 1190
BsrDI GCAATG 3 cut(s) 673, 745, 1097
BsrI ACTGG 3 cut(s) 79, 679, 1014
BssECI CCNNGG 3 cut(s) 66, 98, 803
BssHII GCGCGC 1 cut(s) 53
BssMI GATC 2 cut(s) 37, 1195
BssT1I CCWWGG 2 cut(s) 66, 98
Bst2UI CCWGG 2 cut(s) 94, 540
Bst4CI ACNGT 4 cut(s) 325, 424, 556, 966
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 55, 883
BstDEI CTNAG 3 cut(s) 548, 567, 792
BstDSI CCRYGG 1 cut(s) 803
BstENI CCTNNNNNAGG 1 cut(s) 1063
BstF5I GGATG 6 cut(s) 499, 586, 813, 896, 1041, 1120
BstFNI CGCG 3 cut(s) 55, 428, 885
BstHHI GCGC 2 cut(s) 55, 57
BstKTI GATC 2 cut(s) 40, 1198
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 2 cut(s) 37, 1195
BstMWI GCNNNNNNNGC 4 cut(s) 307, 425, 1082, 1145
BstNI CCWGG 2 cut(s) 94, 540
BstNSI RCATGY 1 cut(s) 1125
BstSCI CCNGG 2 cut(s) 92, 538
BstSFI CTRYAG 1 cut(s) 1077
BstUI CGCG 3 cut(s) 55, 428, 885
BstV1I GCAGC 4 cut(s) 319, 403, 545, 1063
BstV2I GAAGAC 1 cut(s) 925
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 803
BtrI CACGTC 1 cut(s) 1130
BtsCI GGATG 6 cut(s) 499, 586, 813, 896, 1041, 1120
BtsIMutI CAGTG 2 cut(s) 321, 768
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 2 cut(s) 55, 883
CaiI CAGNNNCTG 2 cut(s) 385, 560
CfoI GCGC 2 cut(s) 55, 57
Cfr13I GGNCC 3 cut(s) 313, 435, 911
CpoI CGGWCCG 1 cut(s) 435
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 2 cut(s) 168, 955
CspI CGGWCCG 1 cut(s) 435
CviAII CATG 7 cut(s) 85, 278, 716, 938, 977, 997, 1122
CviQI GTAC 2 cut(s) 168, 955
DdeI CTNAG 3 cut(s) 548, 567, 792
DpnI GATC 2 cut(s) 39, 1197
DpnII GATC 2 cut(s) 37, 1195
Eco130I CCWWGG 2 cut(s) 66, 98
Eco147I AGGCCT 1 cut(s) 97
Eco47I GGWCC 3 cut(s) 313, 435, 911
Eco72I CACGTG 1 cut(s) 578
Eco88I CYCGRG 1 cut(s) 942
EcoNI CCTNNNNNAGG 1 cut(s) 1063
EcoRI GAATTC 1 cut(s) 1190
EcoRII CCWGG 2 cut(s) 92, 538
EcoT14I CCWWGG 2 cut(s) 66, 98
ErhI CCWWGG 2 cut(s) 66, 98
FaeI CATG 7 cut(s) 88, 281, 719, 941, 980, 1000, 1125
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 444
FatI CATG 7 cut(s) 84, 277, 715, 937, 976, 996, 1121
FauI CCCGC 1 cut(s) 421
Fnu4HI GCNGC 5 cut(s) 308, 417, 534, 1074, 1077
FokI GGATG 6 cut(s) 506, 573, 820, 883, 1048, 1127
Fsp4HI GCNGC 5 cut(s) 308, 417, 534, 1074, 1077
FspBI CTAG 2 cut(s) 848, 1202
GlaI GCGC 2 cut(s) 54, 56
GluI GCNGC 5 cut(s) 308, 417, 534, 1074, 1077
GsaI CCCAGC 1 cut(s) 1148
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 2 cut(s) 55, 57
Hin1II CATG 7 cut(s) 88, 281, 719, 941, 980, 1000, 1125
Hin6I GCGC 2 cut(s) 53, 55
HinP1I GCGC 2 cut(s) 53, 55
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 2 cut(s) 518, 1023
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 838
Hpy166II GTNNAC 2 cut(s) 829, 914
Hpy188I TCNGA 4 cut(s) 127, 144, 730, 973
Hpy188III TCNNGA 5 cut(s) 259, 506, 550, 900, 1216
Hpy8I GTNNAC 2 cut(s) 829, 914
HpyAV CCTTC 4 cut(s) 404, 845, 984, 1213
HpyCH4III ACNGT 4 cut(s) 325, 424, 556, 966
HpyCH4IV ACGT 4 cut(s) 254, 577, 777, 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 307, 425, 1082, 1145
HpyF3I CTNAG 3 cut(s) 548, 567, 792
HpySE526I ACGT 4 cut(s) 254, 577, 777, 1129
Hsp92II CATG 7 cut(s) 88, 281, 719, 941, 980, 1000, 1125
HspAI GCGC 2 cut(s) 53, 55
Kzo9I GATC 2 cut(s) 37, 1195
LmnI GCTCC 3 cut(s) 973, 1144, 1153
Lsp1109I GCAGC 4 cut(s) 319, 403, 545, 1063
LweI GCATC 3 cut(s) 372, 905, 1105
MaeI CTAG 2 cut(s) 848, 1202
MaeII ACGT 4 cut(s) 254, 577, 777, 1129
MaeIII GTNAC 3 cut(s) 448, 562, 573
MalI GATC 2 cut(s) 39, 1197
MboI GATC 2 cut(s) 37, 1195
MboII GAAGA 3 cut(s) 808, 925, 1199
MluCI AATT 7 cut(s) 192, 217, 356, 592, 692, 1062, 1190
MmeI TCCRAC 1 cut(s) 733
MseI TTAA 5 cut(s) 459, 636, 696, 702, 761
MspA1I CMGCKG 1 cut(s) 1076
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 94, 540
MvaI CCWGG 2 cut(s) 94, 540
MvnI CGCG 3 cut(s) 55, 428, 885
MwoI GCNNNNNNNGC 4 cut(s) 307, 425, 1082, 1145
NdeII GATC 2 cut(s) 37, 1195
NlaIII CATG 7 cut(s) 88, 281, 719, 941, 980, 1000, 1125
NlaIV GGNNCC 2 cut(s) 286, 912
NmuCI GTSAC 2 cut(s) 448, 573
NspI RCATGY 1 cut(s) 1125
PaeR7I CTCGAG 1 cut(s) 942
PaqCI CACCTGC 1 cut(s) 1070
PauI GCGCGC 1 cut(s) 53
PceI AGGCCT 1 cut(s) 97
PfeI GAWTC 2 cut(s) 518, 1023
PflMI CCANNNNNTGG 2 cut(s) 99, 1157
PkrI GCNGC 5 cut(s) 309, 418, 535, 1075, 1078
PmaCI CACGTG 1 cut(s) 578
PmlI CACGTG 1 cut(s) 578
Ppu21I YACGTR 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 92, 538
PspCI CACGTG 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 1144
PspGI CCWGG 2 cut(s) 92, 538
PspN4I GGNNCC 2 cut(s) 286, 912
PspPI GGNCC 3 cut(s) 313, 435, 911
PspXI VCTCGAGB 1 cut(s) 942
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 2 cut(s) 385, 560
PteI GCGCGC 1 cut(s) 53
RsaI GTAC 2 cut(s) 169, 956
RsaNI GTAC 2 cut(s) 168, 955
Rsr2I CGGWCCG 1 cut(s) 435
RsrII CGGWCCG 1 cut(s) 435
SaqAI TTAA 5 cut(s) 459, 636, 696, 702, 761
SatI GCNGC 5 cut(s) 308, 417, 534, 1074, 1077
Sau3AI GATC 2 cut(s) 37, 1195
Sau96I GGNCC 3 cut(s) 313, 435, 911
ScrFI CCNGG 2 cut(s) 94, 540
SfaNI GCATC 3 cut(s) 372, 905, 1105
SfcI CTRYAG 1 cut(s) 1077
Sfr274I CTCGAG 1 cut(s) 942
SinI GGWCC 3 cut(s) 313, 435, 911
SlaI CTCGAG 1 cut(s) 942
SmlI CTYRAG 2 cut(s) 504, 942
SmoI CTYRAG 2 cut(s) 504, 942
Sse9I AATT 7 cut(s) 192, 217, 356, 592, 692, 1062, 1190
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 428, 1074
SspMI CTAG 2 cut(s) 848, 1202
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 92, 538
StyI CCWWGG 2 cut(s) 66, 98
TaaI ACNGT 4 cut(s) 325, 424, 556, 966
TaiI ACGT 4 cut(s) 257, 580, 780, 1132
TaqI TCGA 5 cut(s) 114, 943, 1005, 1194, 1217
TaqII GACCGA 1 cut(s) 452
TasI AATT 7 cut(s) 192, 217, 356, 592, 692, 1062, 1190
TatI WGTACW 1 cut(s) 954
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 2 cut(s) 518, 1023
Tru1I TTAA 5 cut(s) 459, 636, 696, 702, 761
Tru9I TTAA 5 cut(s) 459, 636, 696, 702, 761
TscAI CASTG 2 cut(s) 328, 775
TseFI GTSAC 2 cut(s) 448, 573
TseI GCWGC 4 cut(s) 307, 416, 533, 1076
Tsp45I GTSAC 2 cut(s) 448, 573
TspDTI ATGAA 4 cut(s) 73, 732, 993, 1200
TspGWI ACGGA 3 cut(s) 448, 669, 820
TspRI CASTG 2 cut(s) 328, 775
Van91I CCANNNNNTGG 2 cut(s) 99, 1157
VpaK11BI GGWCC 3 cut(s) 313, 435, 911
XagI CCTNNNNNAGG 1 cut(s) 1063
XapI RAATTY 6 cut(s) 192, 217, 356, 592, 692, 1190
XceI RCATGY 1 cut(s) 1125
XhoI CTCGAG 1 cut(s) 942
XspI CTAG 2 cut(s) 848, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.