Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

41783349 .. 41791114

Gene Structure 7766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0345600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGACTTCGATAACCTTCTCGATTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGTGGGTCTTCTCTTCTCTTCGAATTGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTGTTTCACTACATGGCCATGGCAGATAACAGGCAAAGATACATGCCGTTGCCTGATGACCGTTTACCACCCAGAGGCCAACCCCTGGCATATCCCGAGGCAGTTCTACTCGTCAATCCTATCGAGCCTGATCTTAAAGGAGAAGTGGATGACAAGTACCAATACTCATGTGACAACAAGGATAGCCGGGTACATGGGTGGATATGCGCTGATCCGCCGGTGGGATTGTGGCAAATTACACCCAGCAACGAGTTCCGATCTGGTGGACCTGTGAAGCAAAACCTTACCTCTCATGTTGGCCCTACCACCCTTGCGGTGTTTCTAAGCGCTCATTATTCCGGAGACGATCTGGTGCCAAAATTTGCAGCTGGTGAATATTGGAAGAAAGTTTTCGGCCCTGTTTTTATGTATGTCAATTCGGAATATGCAGGAAATGACCCGTTGATTTCACTATGGGAGGATGCTAAAATACAAATGATGATTGAAGTCCAAAGCTGGCCATACAGCTTCCCAGCGTCTGAAGATTTTCCCAAGTCGGACCAACGTGGTGACGTTAGTGGTAGACTACTTATCCGAGACGGATATATTAGCGATGATTATATATCAGCCAATGGTGCATATGTCGGGTTAGCCCCGCCAGGAGACGTTGGGTCATGGCAAAGAGAGTGCAAGGACTATCAATTTTGGACAACAACAGACGAGGATGGCTACTTTTCTATCAATGACATACGGACTGGTGATTATATGCATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

312

Amino Acids

35.43

Weight (kDa)

4.82

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	62 - 110	1.6e-19	Rhamnogalacturonate lyase family
fn3_3	PF14686	265 - 309	2.2e-16	Polysaccharide lyase family 4, domain II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	745
AccIII	TCCGGA	1 cut(s)	521
AciI	CCGC	4 cut(s)	133, 398, 497, 818
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	2 cut(s)	198, 680
AcsI	RAATTY	2 cut(s)	177, 542
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	2 cut(s)	341, 375
AfeI	AGCGCT	1 cut(s)	511
AfiI	CCNNNNNNNGG	3 cut(s)	257, 268, 404
AgsI	TTSAA	3 cut(s)	28, 139, 668
AhdI	GACNNNNNGTC	1 cut(s)	832
AjnI	CCWGG	2 cut(s)	267, 820
AluBI	AGCT	3 cut(s)	551, 678, 690
AluI	AGCT	3 cut(s)	551, 678, 690
Alw26I	GTCTC	3 cut(s)	519, 753, 819
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	521
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	5 cut(s)	198, 259, 481, 577, 680
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	2 cut(s)	177, 542
Asp700I	GAANNNNTTC	2 cut(s)	572, 708
AspLEI	GCGC	2 cut(s)	392, 512
AspS9I	GGNCC	4 cut(s)	449, 482, 578, 721
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	4 cut(s)	106, 566, 743, 932
AsuII	TTCGAA	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	449, 721
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BalI	TGGCCA	2 cut(s)	200, 682
BanI	GGYRCC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	1 cut(s)	881
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	269, 822
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	519, 753, 819
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	3 cut(s)	269, 371, 822
Bme18I	GGWCC	2 cut(s)	449, 721
BmeRI	GACNNNNNGTC	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	449, 482, 578, 721
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	3 cut(s)	269, 371, 822
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	201, 267, 279
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 268, 404
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	155, 922
BseAI	TCCGGA	1 cut(s)	521
BseBI	CCWGG	2 cut(s)	269, 822
BseDI	CCNNGG	3 cut(s)	201, 267, 279
BseGI	GGATG	3 cut(s)	337, 649, 892
BseLI	CCNNNNNNNGG	3 cut(s)	257, 268, 404
BseNI	ACTGG	2 cut(s)	155, 922
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	560
BseYI	CCCAGC	2 cut(s)	425, 694
BshFI	GGCC	5 cut(s)	200, 261, 483, 579, 682
BshNI	GGYRCC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	370, 401, 522
BslI	CCNNNNNNNGG	3 cut(s)	257, 268, 404
BsmAI	GTCTC	3 cut(s)	519, 753, 819
BsmBI	CGTCTC	3 cut(s)	519, 753, 819
BsnI	GGCC	5 cut(s)	200, 261, 483, 579, 682
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	521
Bsp143I	GATC	5 cut(s)	169, 313, 394, 440, 529
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	4 cut(s)	133, 398, 497, 818
BspANI	GGCC	5 cut(s)	200, 261, 483, 579, 682
BspEI	TCCGGA	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	155, 922
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	201, 267, 279
BssMI	GATC	5 cut(s)	169, 313, 394, 440, 529
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	269, 822
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	84, 89
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	2 cut(s)	59, 506
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	337, 649, 892
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	392, 512
BstKTI	GATC	5 cut(s)	172, 316, 397, 443, 532
BstMAI	GTCTC	3 cut(s)	519, 753, 819
BstMBI	GATC	5 cut(s)	169, 313, 394, 440, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	2 cut(s)	269, 822
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	3 cut(s)	267, 369, 820
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	5 cut(s)	200, 261, 483, 579, 682
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	337, 649, 892
Cac8I	GCNNGC	1 cut(s)	680
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	2 cut(s)	392, 512
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	4 cut(s)	449, 482, 578, 721
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	340, 374
CviAII	CATG	8 cut(s)	196, 202, 226, 351, 377, 476, 837, 932
CviQI	GTAC	2 cut(s)	340, 374
DdeI	CTNAG	2 cut(s)	59, 506
DpnI	GATC	5 cut(s)	171, 315, 396, 442, 531
DpnII	GATC	5 cut(s)	169, 313, 394, 440, 529
DriI	GACNNNNNGTC	1 cut(s)	832
EaeI	YGGCCR	2 cut(s)	198, 680
Eam1104I	CTCTTC	2 cut(s)	84, 89
Eam1105I	GACNNNNNGTC	1 cut(s)	832
EarI	CTCTTC	2 cut(s)	84, 89
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	449, 721
Eco47III	AGCGCT	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	267, 820
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	933
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	3 cut(s)	519, 753, 819
FaeI	CATG	8 cut(s)	199, 205, 229, 354, 380, 479, 840, 935
FatI	CATG	8 cut(s)	195, 201, 225, 350, 376, 475, 836, 931
FauI	CCCGC	1 cut(s)	825
FauNDI	CATATG	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	3 cut(s)	344, 656, 899
Fsp4HI	GCNGC	1 cut(s)	549
GlaI	GCGC	2 cut(s)	391, 511
GluI	GCNGC	1 cut(s)	549
GsaI	CCCAGC	2 cut(s)	429, 698
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	5 cut(s)	200, 261, 483, 579, 682
HapII	CCGG	3 cut(s)	370, 401, 522
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	2 cut(s)	392, 512
Hin1II	CATG	8 cut(s)	199, 205, 229, 354, 380, 479, 840, 935
Hin6I	GCGC	2 cut(s)	390, 510
HinP1I	GCGC	2 cut(s)	390, 510
HpaII	CCGG	3 cut(s)	370, 401, 522
HphI	GGTGA	4 cut(s)	106, 566, 743, 932
Hpy166II	GTNNAC	4 cut(s)	148, 248, 449, 746
Hpy188I	TCNGA	5 cut(s)	440, 604, 703, 721, 758
Hpy188III	TCNNGA	4 cut(s)	20, 28, 278, 522
Hpy8I	GTNNAC	4 cut(s)	148, 248, 449, 746
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	26, 112
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	3 cut(s)	727, 735, 828
HpyCH4V	TGCA	5 cut(s)	548, 611, 800, 852, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	2 cut(s)	59, 506
HpySE526I	ACGT	3 cut(s)	727, 735, 828
Hsp92II	CATG	8 cut(s)	199, 205, 229, 354, 380, 479, 840, 935
HspAI	GCGC	2 cut(s)	390, 510
Kpn2I	TCCGGA	1 cut(s)	521
Kzo9I	GATC	5 cut(s)	169, 313, 394, 440, 529
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	1 cut(s)	634
MaeII	ACGT	3 cut(s)	727, 735, 828
MaeIII	GTNAC	2 cut(s)	353, 731
MalI	GATC	5 cut(s)	171, 315, 396, 442, 531
MboI	GATC	5 cut(s)	169, 313, 394, 440, 529
MboII	GAAGA	5 cut(s)	66, 71, 76, 577, 716
MlsI	TGGCCA	2 cut(s)	200, 682
MluCI	AATT	6 cut(s)	89, 177, 417, 542, 598, 863
MluNI	TGGCCA	2 cut(s)	200, 682
MmeI	TCCRAC	2 cut(s)	143, 699
MnlI	CCTC	8 cut(s)	56, 63, 90, 251, 274, 481, 634, 877
Mox20I	TGGCCA	2 cut(s)	200, 682
Mph1103I	ATGCAT	1 cut(s)	933
MroI	TCCGGA	1 cut(s)	521
MroXI	GAANNNNTTC	2 cut(s)	572, 708
MscI	TGGCCA	2 cut(s)	200, 682
MseI	TTAA	2 cut(s)	123, 318
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	2 cut(s)	200, 682
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	3 cut(s)	370, 401, 522
MspR9I	CCNGG	3 cut(s)	269, 371, 822
MvaI	CCWGG	2 cut(s)	269, 822
MwoI	GCNNNNNNNGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	5 cut(s)	169, 313, 394, 440, 529
NlaIII	CATG	8 cut(s)	199, 205, 229, 354, 380, 479, 840, 935
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	353, 731
NsiI	ATGCAT	1 cut(s)	933
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	572, 708
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	267, 820
PspFI	CCCAGC	2 cut(s)	425, 694
PspGI	CCWGG	2 cut(s)	267, 820
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	4 cut(s)	449, 482, 578, 721
PstNI	CAGNNNCTG	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	341, 375
RsaNI	GTAC	2 cut(s)	340, 374
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	123, 318
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	5 cut(s)	169, 313, 394, 440, 529
Sau96I	GGNCC	4 cut(s)	449, 482, 578, 721
ScrFI	CCNGG	3 cut(s)	269, 371, 822
SfaNI	GCATC	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	87
SgrAI	CRCCGGYG	1 cut(s)	400
SinI	GGWCC	2 cut(s)	449, 721
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	6 cut(s)	89, 177, 417, 542, 598, 863
SsiI	CCGC	4 cut(s)	133, 398, 497, 818
SspI	AATATT	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	267, 369, 820
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	3 cut(s)	730, 738, 831
TaqI	TCGA	4 cut(s)	9, 21, 87, 306
TasI	AATT	6 cut(s)	89, 177, 417, 542, 598, 863
Tru1I	TTAA	2 cut(s)	123, 318
Tru9I	TTAA	2 cut(s)	123, 318
TseFI	GTSAC	2 cut(s)	353, 731
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	353, 731
TspGWI	ACGGA	2 cut(s)	777, 928
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	449, 721
XapI	RAATTY	2 cut(s)	177, 542
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	745
XmnI	GAANNNNTTC	2 cut(s)	572, 708
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.