Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 31 - 68 | 4.6e-08 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 282 - 371 | 6.5e-06 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 339 - 399 | 3.3e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 457 - 600 | 1.5e-06 | Leucine-rich repeat region |
| Island | PF20141 | 608 - 672 | 6.8e-32 | Brassinosteroid receptor island domain |
| LRR_8 | PF13855 | 680 - 735 | 9.7e-08 | Leucine rich repeat |
| LRR_8 | PF13855 | 701 - 759 | 1.5e-06 | Leucine rich repeat |
| Pkinase | PF00069 | 895 - 1165 | 8.6e-43 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 896 - 1165 | 1.3e-42 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3530 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2372 |
| AccI | GTMKAC | 2 cut(s) | 2721, 3240 |
| AccIII | TCCGGA | 1 cut(s) | 2294 |
| AciI | CCGC | 4 cut(s) | 2076, 2512, 2635, 3469 |
| AclWI | GGATC | 3 cut(s) | 738, 2193, 2230 |
| AcoI | YGGCCR | 1 cut(s) | 3470 |
| AcsI | RAATTY | 9 cut(s) | 49, 235, 637, 984, 1069, 1129, 1443, 1948, 1983 |
| AdeI | CACNNNGTG | 1 cut(s) | 2372 |
| AfeI | AGCGCT | 1 cut(s) | 1258 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 409, 538, 2297, 2372, 2558, 2845, 2858 |
| AflII | CTTAAG | 1 cut(s) | 1676 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3064 |
| AhlI | ACTAGT | 2 cut(s) | 887, 1909 |
| AjiI | CACGTC | 1 cut(s) | 214 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 431, 463 |
| Alw21I | GWGCWC | 2 cut(s) | 1248, 3167 |
| Alw26I | GTCTC | 7 cut(s) | 248, 491, 866, 1103, 1933, 2784, 2878 |
| AlwI | GGATC | 3 cut(s) | 738, 2193, 2230 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 568, 2571, 3427 |
| Ama87I | CYCGRG | 1 cut(s) | 3197 |
| Aor13HI | TCCGGA | 1 cut(s) | 2294 |
| Aor51HI | AGCGCT | 1 cut(s) | 1258 |
| ApeKI | GCWGC | 7 cut(s) | 62, 789, 2565, 2568, 2975, 3033, 3340 |
| ApoI | RAATTY | 9 cut(s) | 49, 235, 637, 984, 1069, 1129, 1443, 1948, 1983 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1061, 1093 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 575, 1843, 2547 |
| AspLEI | GCGC | 2 cut(s) | 707, 1259 |
| AspS9I | GGNCC | 3 cut(s) | 417, 1202, 2375 |
| AsuC2I | CCSGG | 4 cut(s) | 915, 1354, 1508, 3056 |
| AvaI | CYCGRG | 1 cut(s) | 3197 |
| AvaII | GGWCC | 2 cut(s) | 417, 1202 |
| BaeGI | GKGCMC | 1 cut(s) | 3195 |
| BanII | GRGCYC | 1 cut(s) | 2960 |
| BbsI | GAAGAC | 3 cut(s) | 248, 281, 2101 |
| Bbv12I | GWGCWC | 2 cut(s) | 1248, 3167 |
| BbvCI | CCTCAGC | 2 cut(s) | 1312, 3567 |
| BbvI | GCAGC | 7 cut(s) | 49, 801, 2577, 2580, 2987, 3020, 3352 |
| BccI | CCATC | 9 cut(s) | 1222, 1372, 1807, 1981, 2425, 2735, 3324, 3354, 3533 |
| BciVI | GTATCC | 1 cut(s) | 2477 |
| BcnI | CCSGG | 4 cut(s) | 915, 1354, 1508, 3056 |
| BcoDI | GTCTC | 7 cut(s) | 248, 491, 866, 1103, 1933, 2784, 2878 |
| BcuI | ACTAGT | 2 cut(s) | 887, 1909 |
| BfmI | CTRYAG | 2 cut(s) | 3241, 3288 |
| BfoI | RGCGCY | 2 cut(s) | 708, 1260 |
| BfrI | CTTAAG | 1 cut(s) | 1676 |
| BfuI | GTATCC | 1 cut(s) | 2477 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3466 |
| BisI | GCNGC | 8 cut(s) | 63, 790, 2566, 2569, 2976, 3034, 3341, 3470 |
| BlpI | GCTNAGC | 1 cut(s) | 1731 |
| BlsI | GCNGC | 8 cut(s) | 64, 791, 2567, 2570, 2977, 3035, 3342, 3471 |
| BmcAI | AGTACT | 2 cut(s) | 1141, 3203 |
| Bme18I | GGWCC | 2 cut(s) | 417, 1202 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3064 |
| BmeT110I | CYCGRG | 1 cut(s) | 3197 |
| BmgBI | CACGTC | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 3 cut(s) | 417, 1202, 2375 |
| BmiI | GGNNCC | 3 cut(s) | 1576, 2850, 3573 |
| BmrI | ACTGGG | 1 cut(s) | 2980 |
| BmsI | GCATC | 6 cut(s) | 722, 1530, 1589, 2330, 2613, 3209 |
| BmuI | ACTGGG | 1 cut(s) | 2980 |
| BpiI | GAAGAC | 3 cut(s) | 248, 281, 2101 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 471, 503, 2324, 2356, 3257, 3289 |
| BpmI | CTGGAG | 5 cut(s) | 1593, 1676, 2724, 2942, 3165 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1312, 2592, 3567 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1731 |
| BpuEI | CTTGAG | 6 cut(s) | 117, 446, 704, 721, 920, 2944 |
| BpuMI | CCSGG | 4 cut(s) | 915, 1354, 1508, 3056 |
| BsaAI | YACGTR | 1 cut(s) | 3190 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3150 |
| BsaI | GGTCTC | 2 cut(s) | 248, 2784 |
| BsaJI | CCNNGG | 3 cut(s) | 475, 708, 2218 |
| BsaWI | WCCGGW | 4 cut(s) | 409, 602, 752, 2294 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 368, 398, 1896, 1926 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 409, 538, 2297, 2372, 2558, 2845, 2858 |
| Bse118I | RCCGGY | 2 cut(s) | 1635, 1820 |
| Bse1I | ACTGG | 9 cut(s) | 155, 1057, 1204, 1501, 1576, 1693, 2583, 2975, 3421 |
| Bse3DI | GCAATG | 5 cut(s) | 1451, 1783, 2026, 2445, 3079 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3150 |
| BseAI | TCCGGA | 1 cut(s) | 2294 |
| BseDI | CCNNGG | 3 cut(s) | 475, 708, 2218 |
| BseGI | GGATG | 6 cut(s) | 82, 545, 838, 2321, 3335, 3544 |
| BseJI | GATNNNNATC | 1 cut(s) | 3150 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 409, 538, 2297, 2372, 2558, 2845, 2858 |
| BseMI | GCAATG | 5 cut(s) | 1451, 1783, 2026, 2445, 3079 |
| BseNI | ACTGG | 9 cut(s) | 155, 1057, 1204, 1501, 1576, 1693, 2583, 2975, 3421 |
| BseRI | GAGGAG | 1 cut(s) | 2894 |
| BseSI | GKGCMC | 1 cut(s) | 3195 |
| BseXI | GCAGC | 7 cut(s) | 49, 801, 2577, 2580, 2987, 3020, 3352 |
| BseYI | CCCAGC | 2 cut(s) | 2317, 2857 |
| BsgI | GTGCAG | 1 cut(s) | 1920 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1248, 3167 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3197 |
| BslFI | GGGAC | 6 cut(s) | 1027, 1369, 2080, 2245, 2273, 3071 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 409, 538, 2297, 2372, 2558, 2845, 2858 |
| BsmAI | GTCTC | 7 cut(s) | 248, 491, 866, 1103, 1933, 2784, 2878 |
| BsmFI | GGGAC | 6 cut(s) | 1027, 1369, 2080, 2245, 2273, 3071 |
| BsmI | GAATGC | 2 cut(s) | 2450, 3017 |
| Bso31I | GGTCTC | 2 cut(s) | 248, 2784 |
| BsoBI | CYCGRG | 1 cut(s) | 3197 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1248, 2960, 3167, 3195 |
| Bsp13I | TCCGGA | 1 cut(s) | 2294 |
| Bsp143I | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1731 |
| BspACI | CCGC | 4 cut(s) | 2076, 2512, 2635, 3469 |
| BspEI | TCCGGA | 1 cut(s) | 2294 |
| BspLI | GGNNCC | 3 cut(s) | 1576, 2850, 3573 |
| BspPI | GGATC | 3 cut(s) | 738, 2193, 2230 |
| BspQI | GCTCTTC | 1 cut(s) | 1090 |
| BspTI | CTTAAG | 1 cut(s) | 1676 |
| BspTNI | GGTCTC | 2 cut(s) | 248, 2784 |
| BsrDI | GCAATG | 5 cut(s) | 1451, 1783, 2026, 2445, 3079 |
| BsrFI | RCCGGY | 2 cut(s) | 1635, 1820 |
| BsrI | ACTGG | 9 cut(s) | 155, 1057, 1204, 1501, 1576, 1693, 2583, 2975, 3421 |
| BssAI | RCCGGY | 2 cut(s) | 1635, 1820 |
| BssECI | CCNNGG | 3 cut(s) | 475, 708, 2218 |
| BssMI | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| Bst6I | CTCTTC | 6 cut(s) | 61, 411, 1090, 1271, 2465, 2519 |
| BstAFI | CTTAAG | 1 cut(s) | 1676 |
| BstBAI | YACGTR | 1 cut(s) | 3190 |
| BstC8I | GCNNGC | 5 cut(s) | 766, 1683, 1809, 1822, 1891 |
| BstEII | GGTNACC | 1 cut(s) | 2355 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2295 |
| BstF5I | GGATG | 6 cut(s) | 82, 545, 838, 2321, 3335, 3544 |
| BstH2I | RGCGCY | 2 cut(s) | 708, 1260 |
| BstHHI | GCGC | 2 cut(s) | 707, 1259 |
| BstKTI | GATC | 7 cut(s) | 334, 733, 1252, 1405, 2034, 2188, 2225 |
| BstMAI | GTCTC | 7 cut(s) | 248, 491, 866, 1103, 1933, 2784, 2878 |
| BstMBI | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 97, 106, 198, 207, 1243, 1313, 1817, 2025, 3466 |
| BstPI | GGTNACC | 1 cut(s) | 2355 |
| BstSFI | CTRYAG | 2 cut(s) | 3241, 3288 |
| BstSLI | GKGCMC | 1 cut(s) | 3195 |
| BstV1I | GCAGC | 7 cut(s) | 49, 801, 2577, 2580, 2987, 3020, 3352 |
| BstV2I | GAAGAC | 3 cut(s) | 248, 281, 2101 |
| BstX2I | RGATCY | 3 cut(s) | 730, 2185, 2222 |
| BstYI | RGATCY | 3 cut(s) | 730, 2185, 2222 |
| BsuI | GTATCC | 1 cut(s) | 2477 |
| BtrI | CACGTC | 1 cut(s) | 214 |
| BtsCI | GGATG | 6 cut(s) | 82, 545, 838, 2321, 3335, 3544 |
| BtsI | GCAGTG | 1 cut(s) | 788 |
| Cac8I | GCNNGC | 5 cut(s) | 766, 1683, 1809, 1822, 1891 |
| CaiI | CAGNNNCTG | 3 cut(s) | 568, 2571, 3427 |
| CfoI | GCGC | 2 cut(s) | 707, 1259 |
| Cfr10I | RCCGGY | 2 cut(s) | 1635, 1820 |
| Cfr13I | GGNCC | 3 cut(s) | 417, 1202, 2375 |
| CsiI | ACCWGGT | 1 cut(s) | 2844 |
| CviAII | CATG | 8 cut(s) | 183, 357, 1080, 2029, 2905, 3061, 3121, 3576 |
| DpnI | GATC | 7 cut(s) | 333, 732, 1251, 1404, 2033, 2187, 2224 |
| DpnII | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| DraI | TTTAAA | 1 cut(s) | 3502 |
| DraIII | CACNNNGTG | 1 cut(s) | 2372 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3530 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3064 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3530 |
| EaeI | YGGCCR | 1 cut(s) | 3470 |
| Eam1104I | CTCTTC | 6 cut(s) | 61, 411, 1090, 1271, 2465, 2519 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3064 |
| EarI | CTCTTC | 6 cut(s) | 61, 411, 1090, 1271, 2465, 2519 |
| Eco147I | AGGCCT | 2 cut(s) | 192, 3286 |
| Eco24I | GRGCYC | 1 cut(s) | 2960 |
| Eco31I | GGTCTC | 2 cut(s) | 248, 2784 |
| Eco32I | GATATC | 1 cut(s) | 1172 |
| Eco47I | GGWCC | 2 cut(s) | 417, 1202 |
| Eco47III | AGCGCT | 1 cut(s) | 1258 |
| Eco88I | CYCGRG | 1 cut(s) | 3197 |
| Eco91I | GGTNACC | 1 cut(s) | 2355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2295 |
| EcoO65I | GGTNACC | 1 cut(s) | 2355 |
| EcoRV | GATATC | 1 cut(s) | 1172 |
| EcoT38I | GRGCYC | 1 cut(s) | 2960 |
| FaeI | CATG | 8 cut(s) | 186, 360, 1083, 2032, 2908, 3064, 3124, 3579 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2630, 2662, 3422, 3454 |
| FaqI | GGGAC | 6 cut(s) | 1027, 1369, 2080, 2245, 2273, 3071 |
| FatI | CATG | 8 cut(s) | 182, 356, 1079, 2028, 2904, 3060, 3120, 3575 |
| FauI | CCCGC | 1 cut(s) | 2083 |
| FblI | GTMKAC | 2 cut(s) | 2721, 3240 |
| Fnu4HI | GCNGC | 8 cut(s) | 63, 790, 2566, 2569, 2976, 3034, 3341, 3470 |
| FokI | GGATG | 6 cut(s) | 89, 532, 845, 2308, 3342, 3551 |
| FriOI | GRGCYC | 1 cut(s) | 2960 |
| FseI | GGCCGGCC | 1 cut(s) | 1824 |
| Fsp4HI | GCNGC | 8 cut(s) | 63, 790, 2566, 2569, 2976, 3034, 3341, 3470 |
| GlaI | GCGC | 2 cut(s) | 706, 1258 |
| GluI | GCNGC | 8 cut(s) | 63, 790, 2566, 2569, 2976, 3034, 3341, 3470 |
| GsaI | CCCAGC | 2 cut(s) | 2321, 2861 |
| GsuI | CTGGAG | 5 cut(s) | 1593, 1676, 2724, 2942, 3165 |
| HaeII | RGCGCY | 2 cut(s) | 708, 1260 |
| HhaI | GCGC | 2 cut(s) | 707, 1259 |
| Hin1II | CATG | 8 cut(s) | 186, 360, 1083, 2032, 2908, 3064, 3124, 3579 |
| Hin6I | GCGC | 2 cut(s) | 705, 1257 |
| HinP1I | GCGC | 2 cut(s) | 705, 1257 |
| HincII | GTYRAC | 3 cut(s) | 376, 454, 555 |
| HindII | GTYRAC | 3 cut(s) | 376, 454, 555 |
| HindIII | AAGCTT | 6 cut(s) | 89, 864, 1154, 1679, 2152, 2765 |
| Hpy166II | GTNNAC | 7 cut(s) | 376, 454, 555, 2005, 2090, 2722, 3241 |
| Hpy8I | GTNNAC | 7 cut(s) | 376, 454, 555, 2005, 2090, 2722, 3241 |
| HpyCH4IV | ACGT | 3 cut(s) | 213, 2610, 3189 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 97, 106, 198, 207, 1243, 1313, 1817, 2025, 3466 |
| HpySE526I | ACGT | 3 cut(s) | 213, 2610, 3189 |
| Hsp92II | CATG | 8 cut(s) | 186, 360, 1083, 2032, 2908, 3064, 3124, 3579 |
| HspAI | GCGC | 2 cut(s) | 705, 1257 |
| Kpn2I | TCCGGA | 1 cut(s) | 2294 |
| KroI | GCCGGC | 1 cut(s) | 1820 |
| KroNI | GCCGGC | 1 cut(s) | 1822 |
| Kzo9I | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| LguI | GCTCTTC | 1 cut(s) | 1090 |
| LmnI | GCTCC | 4 cut(s) | 1024, 1312, 1574, 1646 |
| Lsp1109I | GCAGC | 7 cut(s) | 49, 801, 2577, 2580, 2987, 3020, 3352 |
| LweI | GCATC | 6 cut(s) | 722, 1530, 1589, 2330, 2613, 3209 |
| MabI | ACCWGGT | 1 cut(s) | 2844 |
| MaeII | ACGT | 3 cut(s) | 213, 2610, 3189 |
| MaeIII | GTNAC | 6 cut(s) | 590, 1620, 2249, 2355, 2776, 3185 |
| MalI | GATC | 7 cut(s) | 333, 732, 1251, 1404, 2033, 2187, 2224 |
| MboI | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| MfeI | CAATTG | 2 cut(s) | 2172, 2732 |
| MflI | RGATCY | 3 cut(s) | 730, 2185, 2222 |
| MhlI | GDGCHC | 4 cut(s) | 1248, 2960, 3167, 3195 |
| MlyI | GAGTC | 6 cut(s) | 295, 493, 1935, 1935, 2187, 2227 |
| MmeI | TCCRAC | 8 cut(s) | 290, 369, 411, 1491, 1954, 2576, 2854, 3307 |
| MroI | TCCGGA | 1 cut(s) | 2294 |
| MroNI | GCCGGC | 1 cut(s) | 1820 |
| MroXI | GAANNNNTTC | 3 cut(s) | 575, 1843, 2547 |
| MseI | TTAA | 5 cut(s) | 1677, 2132, 2165, 2946, 3501 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1607, 1994, 3156 |
| MspA1I | CMGCKG | 6 cut(s) | 62, 992, 1730, 2305, 2512, 2571 |
| MspCI | CTTAAG | 1 cut(s) | 1676 |
| MunI | CAATTG | 2 cut(s) | 2172, 2732 |
| Mva1269I | GAATGC | 2 cut(s) | 2450, 3017 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 97, 106, 198, 207, 1243, 1313, 1817, 2025, 3466 |
| NaeI | GCCGGC | 1 cut(s) | 1822 |
| NciI | CCSGG | 4 cut(s) | 915, 1354, 1508, 3056 |
| NdeII | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| NgoMIV | GCCGGC | 1 cut(s) | 1820 |
| NlaIII | CATG | 8 cut(s) | 186, 360, 1083, 2032, 2908, 3064, 3124, 3579 |
| NlaIV | GGNNCC | 3 cut(s) | 1576, 2850, 3573 |
| NmeAIII | GCCGAG | 3 cut(s) | 309, 689, 1213 |
| NmuCI | GTSAC | 3 cut(s) | 1620, 2249, 2776 |
| PceI | AGGCCT | 2 cut(s) | 192, 3286 |
| PciSI | GCTCTTC | 1 cut(s) | 1090 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3195 |
| PctI | GAATGC | 2 cut(s) | 2450, 3017 |
| PdiI | GCCGGC | 1 cut(s) | 1822 |
| PdmI | GAANNNNTTC | 3 cut(s) | 575, 1843, 2547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2372 |
| PfoI | TCCNGGA | 6 cut(s) | 696, 1352, 1506, 1834, 2181, 3534 |
| PkrI | GCNGC | 8 cut(s) | 64, 791, 2567, 2570, 2977, 3035, 3342, 3471 |
| PleI | GAGTC | 6 cut(s) | 294, 492, 1934, 1935, 2186, 2227 |
| PpsI | GAGTC | 6 cut(s) | 294, 492, 1934, 1935, 2186, 2227 |
| Ppu21I | YACGTR | 1 cut(s) | 3190 |
| PspEI | GGTNACC | 1 cut(s) | 2355 |
| PspFI | CCCAGC | 2 cut(s) | 2317, 2857 |
| PspN4I | GGNNCC | 3 cut(s) | 1576, 2850, 3573 |
| PspPI | GGNCC | 3 cut(s) | 417, 1202, 2375 |
| PstNI | CAGNNNCTG | 3 cut(s) | 568, 2571, 3427 |
| PsuI | RGATCY | 3 cut(s) | 730, 2185, 2222 |
| PvuII | CAGCTG | 5 cut(s) | 62, 992, 1730, 2305, 2571 |
| RigI | GGCCGGCC | 1 cut(s) | 1824 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1607, 1994, 3156 |
| SapI | GCTCTTC | 1 cut(s) | 1090 |
| SaqAI | TTAA | 5 cut(s) | 1677, 2132, 2165, 2946, 3501 |
| SatI | GCNGC | 8 cut(s) | 63, 790, 2566, 2569, 2976, 3034, 3341, 3470 |
| Sau3AI | GATC | 7 cut(s) | 331, 730, 1249, 1402, 2031, 2185, 2222 |
| Sau96I | GGNCC | 3 cut(s) | 417, 1202, 2375 |
| ScaI | AGTACT | 2 cut(s) | 1141, 3203 |
| SchI | GAGTC | 6 cut(s) | 295, 493, 1935, 1935, 2187, 2227 |
| SduI | GDGCHC | 4 cut(s) | 1248, 2960, 3167, 3195 |
| SexAI | ACCWGGT | 1 cut(s) | 2844 |
| SfaNI | GCATC | 6 cut(s) | 722, 1530, 1589, 2330, 2613, 3209 |
| SfcI | CTRYAG | 2 cut(s) | 3241, 3288 |
| SinI | GGWCC | 2 cut(s) | 417, 1202 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1607, 1994, 3156 |
| SmlI | CTYRAG | 7 cut(s) | 132, 425, 719, 736, 935, 1676, 2959 |
| SmoI | CTYRAG | 7 cut(s) | 132, 425, 719, 736, 935, 1676, 2959 |
| SpeI | ACTAGT | 2 cut(s) | 887, 1909 |
| SseBI | AGGCCT | 2 cut(s) | 192, 3286 |
| SsiI | CCGC | 4 cut(s) | 2076, 2512, 2635, 3469 |
| SspI | AATATT | 1 cut(s) | 2143 |
| StuI | AGGCCT | 2 cut(s) | 192, 3286 |
| TaiI | ACGT | 3 cut(s) | 216, 2613, 3192 |
| TaqI | TCGA | 7 cut(s) | 225, 1248, 1944, 2494, 3144, 3217, 3375 |
| TaqII | GACCGA | 2 cut(s) | 405, 2808 |
| TatI | WGTACW | 4 cut(s) | 300, 1139, 2901, 3201 |
| TauI | GCSGC | 1 cut(s) | 3472 |
| Tru1I | TTAA | 5 cut(s) | 1677, 2132, 2165, 2946, 3501 |
| Tru9I | TTAA | 5 cut(s) | 1677, 2132, 2165, 2946, 3501 |
| TseFI | GTSAC | 3 cut(s) | 1620, 2249, 2776 |
| TseI | GCWGC | 7 cut(s) | 62, 789, 2565, 2568, 2975, 3033, 3340 |
| Tsp45I | GTSAC | 3 cut(s) | 1620, 2249, 2776 |
| TspDTI | ATGAA | 9 cut(s) | 171, 306, 534, 648, 1258, 1952, 2921, 3077, 3102 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2372 |
| Vha464I | CTTAAG | 1 cut(s) | 1676 |
| VpaK11BI | GGWCC | 2 cut(s) | 417, 1202 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2295 |
| XapI | RAATTY | 9 cut(s) | 49, 235, 637, 984, 1069, 1129, 1443, 1948, 1983 |
| XbaI | TCTAGA | 1 cut(s) | 524 |
| XmiI | GTMKAC | 2 cut(s) | 2721, 3240 |
| XmnI | GAANNNNTTC | 3 cut(s) | 575, 1843, 2547 |
| ZrmI | AGTACT | 2 cut(s) | 1141, 3203 |