Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

27782194 .. 27782484

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0286200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTCTCTGAAGACTATGCATCCTCCAAGTGGTGCTTGGATGAACTTGTCAAGATCCTCCTCGACTGCAAGAAATCATATGAACAAATGGTTCGGCCAGTTTTCTACAGAGTCGATCCATCAGATATACAAAATTATAGAGGTAGCTTTGGGAAGGCACTTGCTAATCATGAATGCAAATTCAAAGATAACATGGAGAAGGTCCAGATATGGAAGGCAGCTCTTAAAGAAGCGGCAAATTTGTCAGGGTGGCCTCTCTTGGATGAGTACTTATCTATCCACCGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

96

Amino Acids

11.26

Weight (kDa)

6.71

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	2 - 84	6.3e-22	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	2 cut(s)	49, 110
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	179, 238
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	147, 221
AluI	AGCT	2 cut(s)	147, 221
AlwI	GGATC	2 cut(s)	49, 110
AoxI	GGCC	2 cut(s)	95, 251
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	179, 238
AspS9I	GGNCC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	2 cut(s)	219, 234
BlsI	GCNGC	2 cut(s)	220, 235
BmcAI	AGTACT	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmsI	GCATC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	98
BseGI	GGATG	3 cut(s)	20, 46, 268
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	97, 253
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	97, 253
Bsp143I	GATC	2 cut(s)	54, 115
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	97, 253
BspHI	TCATGA	1 cut(s)	169
BspPI	GGATC	2 cut(s)	49, 110
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	282
BssMI	GATC	2 cut(s)	54, 115
BstF5I	GGATG	3 cut(s)	20, 46, 268
BstKTI	GATC	2 cut(s)	57, 118
BstMBI	GATC	2 cut(s)	54, 115
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	97, 253
BtsCI	GGATG	3 cut(s)	20, 46, 268
CciI	TCATGA	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	170, 193
CviJI	RGCY	5 cut(s)	97, 147, 221, 253, 286
CviKI_1	RGCY	5 cut(s)	97, 147, 221, 253, 286
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	2 cut(s)	56, 117
DpnII	GATC	2 cut(s)	54, 115
EaeI	YGGCCR	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	2 cut(s)	173, 196
FaiI	YATR	8 cut(s)	18, 79, 81, 128, 138, 171, 194, 211
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	2 cut(s)	169, 192
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	219, 234
FokI	GGATG	3 cut(s)	7, 53, 275
Fsp4HI	GCNGC	2 cut(s)	219, 234
GluI	GCNGC	2 cut(s)	219, 234
HaeIII	GGCC	2 cut(s)	97, 253
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	173, 196
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	10, 124
Hpy188III	TCNNGA	3 cut(s)	52, 170, 205
HpyAV	CCTTC	3 cut(s)	148, 193, 208
HpyCH4V	TGCA	3 cut(s)	20, 69, 177
Hsp92II	CATG	2 cut(s)	173, 196
Kzo9I	GATC	2 cut(s)	54, 115
LpnPI	CCDG	3 cut(s)	111, 218, 231
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	29
MalI	GATC	2 cut(s)	56, 117
MboI	GATC	2 cut(s)	54, 115
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	3 cut(s)	133, 179, 238
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	34, 68, 71, 134, 264
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	2 cut(s)	225, 289
MspI	CCGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	54, 115
NlaIII	CATG	2 cut(s)	173, 196
NsiI	ATGCAT	1 cut(s)	22
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	220, 235
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	225, 289
SatI	GCNGC	2 cut(s)	219, 234
Sau3AI	GATC	2 cut(s)	54, 115
Sau96I	GGNCC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	120
SetI	ASST	4 cut(s)	145, 149, 204, 223
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	133, 179, 238
SsiI	CCGC	1 cut(s)	233
TaqI	TCGA	2 cut(s)	63, 114
TasI	AATT	3 cut(s)	133, 179, 238
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	225, 289
Tru9I	TTAA	2 cut(s)	225, 289
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	57, 96, 186
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	2 cut(s)	179, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.