Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005767.1

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Forward (+)

81090 .. 81874

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005767.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggaaccacgaactctgcaactaatggaacttcaaacccagcaacaaatggaactacaagcccagcaacccaccgaggagggaggaagcaaccaagcagccgggcgtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacactagctcaactaagaatcctccaggagctttactatgacaaggtgcttaaaaacccaactccagagcagattcaaaagatctgccttcatctacagcaatatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaaattcagaacgttcgggaggataatctgccatggaacaacaaggaggagatcaccaggaggtcgagactcttcctctgttccctgagcacggtgaagacatccttggtaacccgaagactacatccgaggaaggtagcgcatttggttactattccggtggctcaggcggttataacagtggctctcccgtttctcttgagctcagcctcaatccatccggagctgccgacttggcttagaatagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

193

Amino Acids

22.47

Weight (kDa)

9.82

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AasI	GACNNNNNNGTC	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	1 cut(s)	500
AclI	AACGTT	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	141, 421
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	35, 230, 328
AjnI	CCWGG	2 cut(s)	177, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	4 cut(s)	161, 184, 534, 556
AluI	AGCT	4 cut(s)	161, 184, 534, 556
Alw21I	GWGCWC	2 cut(s)	422, 536
Alw26I	GTCTC	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	98, 556
ApoI	RAATTY	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	376, 436
BanII	GRGCYC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	3 cut(s)	274, 434, 454
Bbv12I	GWGCWC	2 cut(s)	422, 536
BbvI	GCAGC	2 cut(s)	110, 543
BccI	CCATC	1 cut(s)	555
BciT130I	CCWGG	2 cut(s)	179, 388
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	248
BglI	GCCNNNNNGGC	2 cut(s)	127, 565
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	99, 557
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	2 cut(s)	100, 558
Bme1390I	CCNGG	3 cut(s)	103, 179, 388
BmiI	GGNNCC	2 cut(s)	6, 293
BmrFI	CCNGG	3 cut(s)	103, 179, 388
BpiI	GAAGAC	3 cut(s)	274, 434, 454
BpmI	CTGGAG	2 cut(s)	161, 201
Bpu10I	CCTNAGC	2 cut(s)	416, 495
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuEI	CTTGAG	2 cut(s)	287, 550
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	4 cut(s)	75, 362, 435, 458
BsaWI	WCCGGW	3 cut(s)	141, 487, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 421
Bse118I	RCCGGY	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	179, 388
BseDI	CCNNGG	4 cut(s)	75, 362, 435, 458
BseGI	GGATG	3 cut(s)	431, 454, 547
BseLI	CCNNNNNNNGG	2 cut(s)	141, 421
BseMII	CTCAG	3 cut(s)	407, 509, 549
BseRI	GAGGAG	2 cut(s)	92, 392
BseXI	GCAGC	2 cut(s)	110, 543
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	422, 536
BsiSI	CCGG	4 cut(s)	102, 142, 488, 551
BslI	CCNNNNNNNGG	2 cut(s)	141, 421
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	422, 536
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	234, 264, 381
Bsp1720I	GCTNAGC	1 cut(s)	535
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	408, 508, 548
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	6, 293
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	4 cut(s)	75, 362, 435, 458
BssMI	GATC	3 cut(s)	234, 264, 381
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	362, 435
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	179, 388
Bst4CI	ACNGT	2 cut(s)	424, 511
Bst6I	CTCTTC	1 cut(s)	407
BstDEI	CTNAG	5 cut(s)	167, 416, 495, 535, 569
BstDSI	CCRYGG	1 cut(s)	362
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	431, 454, 547
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	3 cut(s)	237, 267, 384
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	3 cut(s)	234, 264, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 259, 565
BstNI	CCWGG	2 cut(s)	179, 388
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	3 cut(s)	101, 177, 386
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	110, 543
BstV2I	GAAGAC	3 cut(s)	274, 434, 454
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	431, 454, 547
BtsIMutI	CAGTG	1 cut(s)	516
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	1 cut(s)	363
DdeI	CTNAG	5 cut(s)	167, 416, 495, 535, 569
DpnI	GATC	3 cut(s)	236, 266, 383
DpnII	GATC	3 cut(s)	234, 264, 381
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	362, 435
Eco24I	GRGCYC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	534
Eco91I	GGTNACC	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	534
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	177, 386
EcoT14I	CCWWGG	2 cut(s)	362, 435
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	2 cut(s)	362, 435
FaeI	CATG	1 cut(s)	366
FaiI	YATR	4 cut(s)	192, 258, 364, 506
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 419, 451
FatI	CATG	1 cut(s)	362
Fnu4HI	GCNGC	2 cut(s)	99, 557
FokI	GGATG	3 cut(s)	418, 441, 534
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	99, 557
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	2 cut(s)	99, 557
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	2 cut(s)	161, 201
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	102, 142, 488, 551
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	4 cut(s)	148, 171, 226, 399
HpaII	CCGG	4 cut(s)	102, 142, 488, 551
HphI	GGTGA	2 cut(s)	376, 436
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	339, 459
Hpy188III	TCNNGA	7 cut(s)	218, 295, 311, 347, 396, 529, 551
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	251, 322, 457
HpyCH4III	ACNGT	2 cut(s)	424, 511
HpyCH4IV	ACGT	2 cut(s)	279, 342
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 259, 565
HpyF3I	CTNAG	5 cut(s)	167, 416, 495, 535, 569
HpySE526I	ACGT	2 cut(s)	279, 342
Hsp92II	CATG	1 cut(s)	366
HspAI	GCGC	1 cut(s)	470
Kpn2I	TCCGGA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	234, 264, 381
LmnI	GCTCC	2 cut(s)	181, 553
Lsp1109I	GCAGC	2 cut(s)	110, 543
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	279, 342
MaeIII	GTNAC	2 cut(s)	439, 478
MalI	GATC	3 cut(s)	236, 266, 383
MboI	GATC	3 cut(s)	234, 264, 381
MboII	GAAGA	4 cut(s)	274, 394, 439, 459
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	422, 536
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	142, 393
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	204
MspI	CCGG	4 cut(s)	102, 142, 488, 551
MspR9I	CCNGG	3 cut(s)	103, 179, 388
MvaI	CCWGG	2 cut(s)	179, 388
MwoI	GCNNNNNNNGC	3 cut(s)	127, 259, 565
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	234, 264, 381
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	2 cut(s)	6, 293
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	171, 226
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	100, 558
PleI	GAGTC	2 cut(s)	142, 393
PpsI	GAGTC	2 cut(s)	142, 393
PsiI	TTATAA	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	177, 386
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	2 cut(s)	177, 386
PspN4I	GGNNCC	2 cut(s)	6, 293
PsuI	RGATCY	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	99, 557
Sau3AI	GATC	3 cut(s)	234, 264, 381
SchI	GAGTC	2 cut(s)	142, 393
ScrFI	CCNGG	3 cut(s)	103, 179, 388
SduI	GDGCHC	2 cut(s)	422, 536
SfcI	CTRYAG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	302, 529
SmoI	CTYRAG	2 cut(s)	302, 529
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	101, 177, 386
StyI	CCWWGG	2 cut(s)	362, 435
TaaI	ACNGT	2 cut(s)	424, 511
TaiI	ACGT	2 cut(s)	282, 345
TaqI	TCGA	2 cut(s)	267, 395
TasI	AATT	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	2 cut(s)	98, 556
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.