Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

12432370 .. 12432861

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGGTCAATTAGCAATGAAATTGATCATGAATTTCGCTTCTTCCGAGCATACAATGATGGCCGAATTGAAACATTTTACAAGACCCAAAAGATCCCACCTTCTACTGATTCCATTACCGGTGTCCAATCCAAAGACGTTGTAATTTCACCTGAAGTTTCGGCCCGGATCTTCCTACCCAAGATTCATAACCCAACCCAAAAACTCCCCGTCCTCTTCTACATCCATGGCGGCGGGTTTTGCCTCGAATCCGCCTTCTCTCCTATGTTCCACAAACACCTCACCTTATTGGCCCATGAATCCAATGCAATTGCGATTTCGGTCGAATACGGGCTGTTCCCAGAGCGGCCCATACCCGCTTGCAACGAGGACTCATGGGCCACACTCAAATGGGTTGTATCCCATTCCACTTGCAATGGCCCTGACCCATGGTTGAACCAGTATGCTGAGTTTGACTGGCCCATGGTTGTATCATTTGTGCAATTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

163

Amino Acids

18.5

Weight (kDa)

5.74

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	57 - 136	1.3e-07	BD-FAE
COesterase	PF00135	57 - 112	2.7e-06	Carboxylesterase family
Abhydrolase_3	PF07859	72 - 144	1.1e-17	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	346
AciI	CCGC	5 cut(s)	231, 234, 252, 346, 357
AclWI	GGATC	2 cut(s)	88, 176
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	71, 436
AlwI	GGATC	2 cut(s)	88, 176
AoxI	GGCC	7 cut(s)	61, 162, 291, 347, 378, 418, 458
ApoI	RAATTY	1 cut(s)	32
AsiGI	ACCGGT	1 cut(s)	119
AspS9I	GGNCC	6 cut(s)	163, 292, 348, 378, 419, 459
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	141, 274
BccI	CCATC	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	166
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	2 cut(s)	232, 347
BlsI	GCNGC	2 cut(s)	233, 348
Bme1390I	CCNGG	1 cut(s)	166
BmgT120I	GGNCC	6 cut(s)	163, 292, 348, 378, 419, 459
BmrFI	CCNGG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	226, 428, 462
BsaWI	WCCGGW	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	439, 461
Bse3DI	GCAATG	2 cut(s)	22, 421
BseDI	CCNNGG	3 cut(s)	226, 428, 462
BseGI	GGATG	1 cut(s)	222
BseMI	GCAATG	2 cut(s)	22, 421
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	439, 461
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	7 cut(s)	63, 164, 293, 349, 380, 420, 460
BshTI	ACCGGT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	120, 166
BsnI	GGCC	7 cut(s)	63, 164, 293, 349, 380, 420, 460
Bsp143I	GATC	3 cut(s)	25, 93, 168
Bsp19I	CCATGG	3 cut(s)	226, 428, 462
BspACI	CCGC	5 cut(s)	231, 234, 252, 346, 357
BspANI	GGCC	7 cut(s)	63, 164, 293, 349, 380, 420, 460
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	28
BspPI	GGATC	2 cut(s)	88, 176
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	22, 421
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	439, 461
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	226, 428, 462
BssMI	GATC	3 cut(s)	25, 93, 168
BssT1I	CCWWGG	3 cut(s)	226, 428, 462
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	3 cut(s)	226, 428, 462
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	28, 96, 171
BstMBI	GATC	3 cut(s)	25, 93, 168
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	93, 168
BstYI	RGATCY	2 cut(s)	93, 168
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	7 cut(s)	63, 164, 293, 349, 380, 420, 460
BtgI	CCRYGG	3 cut(s)	226, 428, 462
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	6 cut(s)	163, 292, 348, 378, 419, 459
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	6 cut(s)	29, 227, 296, 375, 429, 463
CviJI	RGCY	8 cut(s)	63, 164, 293, 334, 349, 380, 420, 460
CviKI_1	RGCY	8 cut(s)	63, 164, 293, 334, 349, 380, 420, 460
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	27, 95, 170
DpnII	GATC	3 cut(s)	25, 93, 168
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	3 cut(s)	226, 428, 462
Eco57I	CTGAAG	1 cut(s)	174
EcoT14I	CCWWGG	3 cut(s)	226, 428, 462
ErhI	CCWWGG	3 cut(s)	226, 428, 462
FaeI	CATG	6 cut(s)	32, 230, 299, 378, 432, 466
FatI	CATG	6 cut(s)	28, 226, 295, 374, 428, 462
FauI	CCCGC	2 cut(s)	227, 364
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	232, 347
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	232, 347
GluI	GCNGC	2 cut(s)	232, 347
HaeIII	GGCC	7 cut(s)	63, 164, 293, 349, 380, 420, 460
HapII	CCGG	2 cut(s)	120, 166
Hin1II	CATG	6 cut(s)	32, 230, 299, 378, 432, 466
HinfI	GANTC	5 cut(s)	110, 184, 248, 299, 371
HpaII	CCGG	2 cut(s)	120, 166
HphI	GGTGA	2 cut(s)	141, 274
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	111, 265
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	308, 363, 414, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	32, 230, 299, 378, 432, 466
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 93, 168
LpnPI	CCDG	7 cut(s)	133, 165, 179, 354, 435, 442, 452
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	27, 95, 170
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	3 cut(s)	25, 93, 168
MboII	GAAGA	3 cut(s)	34, 163, 208
MfeI	CAATTG	2 cut(s)	309, 482
MflI	RGATCY	2 cut(s)	93, 168
MluCI	AATT	7 cut(s)	9, 21, 32, 66, 144, 309, 482
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	4 cut(s)	224, 254, 290, 361
MslI	CAYNNNNRTG	1 cut(s)	388
MspI	CCGG	2 cut(s)	120, 166
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	2 cut(s)	309, 482
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	3 cut(s)	226, 428, 462
NdeII	GATC	3 cut(s)	25, 93, 168
NlaIII	CATG	6 cut(s)	32, 230, 299, 378, 432, 466
PagI	TCATGA	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	110, 184, 248, 299
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	233, 348
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PspPI	GGNCC	6 cut(s)	163, 292, 348, 378, 419, 459
PsuI	RGATCY	2 cut(s)	93, 168
RseI	CAYNNNNRTG	1 cut(s)	388
SatI	GCNGC	2 cut(s)	232, 347
Sau3AI	GATC	3 cut(s)	25, 93, 168
Sau96I	GGNCC	6 cut(s)	163, 292, 348, 378, 419, 459
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	5 cut(s)	103, 141, 154, 282, 287
SmiMI	CAYNNNNRTG	1 cut(s)	388
Sse9I	AATT	7 cut(s)	9, 21, 32, 66, 144, 309, 482
SsiI	CCGC	5 cut(s)	231, 234, 252, 346, 357
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	3 cut(s)	226, 428, 462
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	246, 324
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	7 cut(s)	9, 21, 32, 66, 144, 309, 482
TauI	GCSGC	2 cut(s)	234, 349
TfiI	GAWTC	4 cut(s)	110, 184, 248, 299
TspDTI	ATGAA	4 cut(s)	33, 45, 176, 312
XapI	RAATTY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.