Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

12583600 .. 12584100

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAACAGAAACCAAGTCCACCAAGGGAGACCATGTGCAAATAGATATGGAGTCGGCAAGGAGGTACTTGGAGAAGGAAGGCGAAACTGCAGCCTCCATGGATACTCTGCCAGAAAAGTTCTTTGAGCCTTTCATCATGAAAGGCATTCAAGTGGATCGCATTGAACGCGGCACAATTGTCTGCTCCTTCAAAGTACCCCCTCGATTGCTGAACGGGGGCGGTTTTCTGCATGGTGGAGCCACGGCAACCCTTGTGGATTTGGTCGGGTCAGCTGCAATCTTTACTGTTGGAGCTCCCACTGTTGGAGTGTCGGTGGAGATCAATGTTTCGTACTTGGATTCTGCTTATCCTGGGGAGGAAGTGGAGATTGAGGCCAAGGCTTTGAGGGTTGGGAAAGCTGTTGCTGTTATTAGTGTCGAGTTCAGGAAGAAGAAGACGGGGAAGATTATTGCTCAGGGCCGCCATACCAAGTACCTTGCCCTCTCTAGCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

166

Amino Acids

17.89

Weight (kDa)

8.63

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	74 - 149	3.5e-18	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	171, 222, 463
AclWI	GGATC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	68, 198, 335, 476
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	152, 167, 193
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	275, 296, 401
AluI	AGCT	3 cut(s)	275, 296, 401
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	375, 460
ApeKI	GCWGC	2 cut(s)	92, 275
AspS9I	GGNCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	104, 262
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	4 cut(s)	93, 172, 276, 463
BlsI	GCNGC	4 cut(s)	94, 173, 277, 464
Bme1390I	CCNGG	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	5 cut(s)	24, 99, 243, 353, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	5 cut(s)	24, 99, 243, 353, 378
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	104, 262
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	377, 462
BsiHKAI	GWGCWC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	377, 462
Bso31I	GGTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	157, 321
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	171, 222, 463
BspANI	GGCC	2 cut(s)	377, 462
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	24
BssECI	CCNNGG	5 cut(s)	24, 99, 243, 353, 378
BssMI	GATC	2 cut(s)	157, 321
BssT1I	CCWWGG	3 cut(s)	24, 99, 378
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	289, 304
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	2 cut(s)	99, 243
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	160, 324
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	157, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	104, 262
BstV2I	GAAGAC	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	377, 462
BtgI	CCRYGG	2 cut(s)	99, 243
BtsIMutI	CAGTG	1 cut(s)	300
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	4 cut(s)	67, 197, 334, 475
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	4 cut(s)	35, 100, 139, 233
CviJI	RGCY	9 cut(s)	95, 130, 242, 275, 296, 377, 383, 401, 462
CviKI_1	RGCY	9 cut(s)	95, 130, 242, 275, 296, 377, 383, 401, 462
CviQI	GTAC	4 cut(s)	67, 197, 334, 475
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	2 cut(s)	159, 323
DpnII	GATC	2 cut(s)	157, 321
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	3 cut(s)	24, 99, 378
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	24, 99, 378
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	3 cut(s)	24, 99, 378
FaeI	CATG	4 cut(s)	38, 103, 142, 236
FaiI	YATR	6 cut(s)	36, 50, 101, 140, 234, 468
FatI	CATG	4 cut(s)	34, 99, 138, 232
Fnu4HI	GCNGC	4 cut(s)	93, 172, 276, 463
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	93, 172, 276, 463
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	4 cut(s)	93, 172, 276, 463
HaeIII	GGCC	2 cut(s)	377, 462
Hin1II	CATG	4 cut(s)	38, 103, 142, 236
HinfI	GANTC	2 cut(s)	53, 341
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	139, 427
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	70, 74, 199
HpyCH4III	ACNGT	2 cut(s)	289, 304
HpyCH4V	TGCA	4 cut(s)	40, 92, 232, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	38, 103, 142, 236
Kzo9I	GATC	2 cut(s)	157, 321
LmnI	GCTCC	4 cut(s)	191, 239, 293, 301
LpnPI	CCDG	5 cut(s)	126, 339, 366, 412, 443
Lsp1109I	GCAGC	2 cut(s)	104, 262
MaeI	CTAG	1 cut(s)	489
MalI	GATC	2 cut(s)	159, 323
MboI	GATC	2 cut(s)	157, 321
MboII	GAAGA	4 cut(s)	442, 445, 448, 457
MfeI	CAATTG	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	177, 494
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	271, 286
MnlI	CCTC	7 cut(s)	57, 106, 213, 352, 367, 381, 494
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	157, 321
NlaIII	CATG	4 cut(s)	38, 103, 142, 236
NlaIV	GGNNCC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	94, 173, 277, 464
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	68, 198, 335, 476
RsaNI	GTAC	4 cut(s)	67, 197, 334, 475
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	298
SatI	GCNGC	4 cut(s)	93, 172, 276, 463
Sau3AI	GATC	2 cut(s)	157, 321
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	5 cut(s)	68, 277, 298, 403, 480
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	177, 494
SsiI	CCGC	3 cut(s)	171, 222, 463
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	3 cut(s)	24, 99, 378
TaaI	ACNGT	2 cut(s)	289, 304
TaqI	TCGA	2 cut(s)	205, 420
TasI	AATT	2 cut(s)	177, 494
TauI	GCSGC	2 cut(s)	174, 465
TfiI	GAWTC	1 cut(s)	341
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	92, 275
TspDTI	ATGAA	2 cut(s)	124, 155
TspRI	CASTG	1 cut(s)	307
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.