Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Forward (+)

9924931 .. 9927661

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGAATCCCAGCACGGACCCACCACCACCACCAAACCCGCCGCAGCCCCACCGACCCTCTACCTCCTGCGACCGCCACCCCGAAGAGAATTTCACCGGCTTCTGCCCCTCATGCCTCTGCGAACGACTAGCCGTTTTGCACCCTTCAACCACCTCTGCTTCTTCCTCGTCCCGAAAACCACCGACTTCCTCGACCGCCGCCGCTGCCCTTAAGGCCATTTTCAAGCCCCCCATTGGCGGTGGCGGGGCCTCCAGCAAAGCCCGACCCACCACCTCCTTTTTTCCTGAGCTCCGCCGCACCAAGTCGTTCTCCGCCTCCAAAAACGAAGGATTCTCCGGCGTTTTCGAGCCGCAGAGAAAGTCCTGCGACGTTCGCGGCCGGAATACGCTCTGGTGTCTCTTCAATCAGGAGAACCCCAACAAGAAAGAGCAACCCACTTGGGGAGCTGCCGGGCCTGAGACTGAAGTCGAAACCAGAAACTTAGCTGGGCCCTCTTCGAGCTTTCGAGGTCCGGTGTTCGAGTCCAAAGAGGAAGAAGAAGAAGACGAAGACGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAACAGAACCAGAACCAGAACGACCGAGGAATAGGGAGGATTTCCGACGAACTCAATGTGGGCAATGTCAGTGAAATCAGAGTTCCAGAAATCGTAGAGGAGGAAGAAGAAGACGAAATACAACAGCACCAACTCAACCAACAACAATCAGAGCCACTACAATTTCAAGAGGAAGACTTGAAGCCCATGAAGGATCACATAGATCTCGACGCTCAGACGAAGAAGAGAGACCTGAAAGAGATCGCCGGAAGCTTCTGGTCTGCCGCTTCGGTGTTCAGCAAGAAACTGCAGAAGTGGCGGCAGAAGCAGAAGCTCAAGAAGCGGCGAAACGGCGGCGGATCGGCCACATTGCCTGTGGAGAAGCCCATTGGGCGACAGTTCAGAGAAACCCAGTCGGAGATCGCTGATTACGGCTTCGGTCGGCGCTCATGCGACACCGATCCCCGGTTTTCGCTTGATGCGGGTCGGATGTCACTCGACGCGGGTCGGATGTCTTTCGACGACCCGAGATACTCTTTCGACGAGCCTCGCGCTTCGTGGGACGGGTACCTAATTGGAAGGACTTTTCCGAGAATGCCCACCATGCTCTCGGTGGTGGAGGATGCTCCGGTGGTTGTTTCGAGAATCGATGCTCAAATTCCGGTGGAGGAGCCGATGAATGCTATTAACGAAGAGGACCCGGTTCCTGGCGGGTCGGTCCAGACCCAGAACTACTATTCGGACTCTTCTTCCAGGCGGCGCAAGAGTCTGGACCGGTCCAACTCCATCAGGAAGACGGCGGCGGCGGTGGTGGCTGAGATTGACGAAATGAAGTCGGTTTCGAATTCCAAAGTGTCGCCCACTACTGCTGACTACTTCCATGGGCCGAAGCTGGTGGCTCCTGATCGAGAGTCGAGAGATTCTAACTCGAACTCTCTCCGCGATGACTGCTCGGAGACCTTTGAGATGGCGTTTCGCGGCGGCGATCCTGTGCTGCGCGGCGGTGATTCGGTGTCTCGCGGTGGGGATTCGGCGGCGTCGGTTGTGGGGAATGGGGAGAGGAAAGATTGTAAGCAGAAGTCTAGAAGGTGGAGCAAGGCCTGGAACATTTGGAGTTTCATACACAGGAGGAGTGGGAACAAGGAGGATGATGAAGATAGGTATAGTAGTAGGCCTAATGGGGTAGAGAGGTCGTTTTCGGAGTCTTGGCCGGAGCTGAGAGGCGGCGGGGAGCGAAATGGGGAAGCAAAGGGTTTCAACCCAAAGATTACGAGGAGCAACAGCAGTGCTAGTTGGAGAAACTCACATAGCTTTGGAGGTGGGGCTTTTGGGAGTATGAGGAAGAATGGTGCTGTTGTTGAGCCACATGTGAATGGAAATGGCAATGCAAATGGGAATGTGAATGGGAATGGGAATGGAAGGAAGAAGAAGGAAGAGTTTGTGCTGGAGAGGAATCGGAGCGCAAGGTATTCACCGAATCACATTGACAATGGACTCTTGCGGTTCTACTTGACGCCGATGAGGAACAGCTGGAGGAGTGGAGGAGGAGCTGGGAAGAGCAGGTCGAATCAGGCACATTCCATCGCCAGAAGTGTACTCCGATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

724

Amino Acids

80.57

Weight (kDa)

6.25

Isoelectric Point (pI)

66.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	10 - 699	2e-262	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2115
Acc65I	GGTACC	1 cut(s)	1131
AccB1I	GGYRCC	1 cut(s)	1131
AccII	CGCG	7 cut(s)	375, 1067, 1116, 1506, 1542, 1563, 1584
AclWI	GGATC	4 cut(s)	786, 931, 1019, 1544
AcoI	YGGCCR	3 cut(s)	376, 927, 1772
AcsI	RAATTY	3 cut(s)	88, 1221, 1408
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	2 cut(s)	1601, 2078
AfaI	GTAC	3 cut(s)	1133, 2160, 2171
AfiI	CCNNNNNNNGG	5 cut(s)	233, 236, 440, 1029, 1271
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	1930
AgeI	ACCGGT	1 cut(s)	1338
AgsI	TTSAA	6 cut(s)	147, 223, 403, 752, 766, 1822
AjnI	CCWGG	3 cut(s)	1270, 1316, 1664
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	5 cut(s)	401, 452, 807, 1514, 1584
AlwI	GGATC	4 cut(s)	786, 931, 1019, 1544
Ama87I	CYCGRG	1 cut(s)	1090
ApaI	GGGCCC	1 cut(s)	492
ApeKI	GCWGC	4 cut(s)	43, 203, 446, 1558
ApoI	RAATTY	3 cut(s)	88, 1221, 1408
AsiGI	ACCGGT	1 cut(s)	1338
Asp718I	GGTACC	1 cut(s)	1131
AspLEI	GCGC	5 cut(s)	1011, 1118, 1326, 1563, 2027
AsuC2I	CCSGG	3 cut(s)	451, 1030, 1265
AsuHPI	GGTGA	3 cut(s)	85, 1580, 2028
AsuII	TTCGAA	1 cut(s)	1406
AvaI	CYCGRG	1 cut(s)	1090
AvaII	GGWCC	6 cut(s)	16, 509, 1261, 1282, 1336, 1341
BaeGI	GKGCMC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	1131
BanII	GRGCYC	2 cut(s)	291, 492
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BbsI	GAAGAC	5 cut(s)	549, 555, 702, 765, 1364
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	55, 190, 433, 1545
BccI	CCATC	3 cut(s)	1358, 1525, 2153
BceAI	ACGGC	4 cut(s)	116, 931, 1012, 1377
BciT130I	CCWGG	3 cut(s)	1272, 1318, 1666
BcnI	CCSGG	3 cut(s)	451, 1030, 1265
BcoDI	GTCTC	5 cut(s)	401, 452, 807, 1514, 1584
BfaI	CTAG	3 cut(s)	128, 1647, 1854
BfmI	CTRYAG	1 cut(s)	872
BfoI	RGCGCY	1 cut(s)	1012
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	2115
BglI	GCCNNNNNGGC	2 cut(s)	212, 955
BglII	AGATCT	1 cut(s)	787
Bme1390I	CCNGG	6 cut(s)	451, 1030, 1265, 1272, 1318, 1666
Bme18I	GGWCC	6 cut(s)	16, 509, 1261, 1282, 1336, 1341
BmeT110I	CYCGRG	1 cut(s)	1090
BmiI	GGNNCC	8 cut(s)	18, 247, 490, 1133, 1236, 1263, 1269, 1464
BmrFI	CCNGG	6 cut(s)	451, 1030, 1265, 1272, 1318, 1666
BmrI	ACTGGG	1 cut(s)	970
BmsI	GCATC	3 cut(s)	1033, 1177, 1204
BmuI	ACTGGG	1 cut(s)	970
BoxI	GACNNNNGTC	2 cut(s)	464, 1068
BpiI	GAAGAC	5 cut(s)	549, 555, 702, 765, 1364
BpmI	CTGGAG	3 cut(s)	235, 2030, 2116
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	1406
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	3 cut(s)	451, 1030, 1265
Bsa29I	ATCGAT	1 cut(s)	1212
BsaHI	GRCGYC	2 cut(s)	1601, 2078
BsaI	GGTCTC	2 cut(s)	807, 1514
BsaJI	CCNNGG	3 cut(s)	610, 1028, 1444
BsaWI	WCCGGW	4 cut(s)	511, 1192, 1225, 1338
Bsc4I	CCNNNNNNNGG	5 cut(s)	233, 236, 440, 1029, 1271
Bse118I	RCCGGY	2 cut(s)	95, 1338
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	3 cut(s)	655, 932, 1954
BseBI	CCWGG	3 cut(s)	1272, 1318, 1666
BseCI	ATCGAT	1 cut(s)	1212
BseDI	CCNNGG	3 cut(s)	610, 1028, 1444
BseGI	GGATG	4 cut(s)	1059, 1080, 1192, 1717
BseLI	CCNNNNNNNGG	5 cut(s)	233, 236, 440, 1029, 1271
BseMI	GCAATG	3 cut(s)	655, 932, 1954
BseMII	CTCAG	5 cut(s)	276, 447, 812, 1371, 1772
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	7 cut(s)	698, 1247, 1708, 1852, 2113, 2121, 2124
BseSI	GKGCMC	1 cut(s)	492
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	4 cut(s)	55, 190, 433, 1545
BseYI	CCCAGC	3 cut(s)	8, 485, 2114
Bsh1236I	CGCG	7 cut(s)	375, 1067, 1116, 1506, 1542, 1563, 1584
Bsh1285I	CGRYCG	5 cut(s)	73, 195, 379, 610, 1006
BshNI	GGYRCC	1 cut(s)	1131
BshTI	ACCGGT	1 cut(s)	1338
BshVI	ATCGAT	1 cut(s)	1212
BsiEI	CGRYCG	5 cut(s)	73, 195, 379, 610, 1006
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	1090
BslFI	GGGAC	2 cut(s)	154, 1139
BslI	CCNNNNNNNGG	5 cut(s)	233, 236, 440, 1029, 1271
BsmAI	GTCTC	5 cut(s)	401, 452, 807, 1514, 1584
BsmFI	GGGAC	2 cut(s)	154, 1139
BsmI	GAATGC	2 cut(s)	1164, 1249
Bso31I	GGTCTC	2 cut(s)	807, 1514
BsoBI	CYCGRG	1 cut(s)	1090
Bsp119I	TTCGAA	1 cut(s)	1406
Bsp120I	GGGCCC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	291, 492
Bsp143I	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
Bsp19I	CCATGG	1 cut(s)	1444
BspCNI	CTCAG	5 cut(s)	277, 448, 811, 1372, 1773
BspDI	ATCGAT	1 cut(s)	1212
BspFNI	CGCG	7 cut(s)	375, 1067, 1116, 1506, 1542, 1563, 1584
BspLI	GGNNCC	8 cut(s)	18, 247, 490, 1133, 1236, 1263, 1269, 1464
BspMAI	CTGCAG	1 cut(s)	876
BspMI	ACCTGC	1 cut(s)	2115
BspPI	GGATC	4 cut(s)	786, 931, 1019, 1544
BspQI	GCTCTTC	1 cut(s)	2114
BspT104I	TTCGAA	1 cut(s)	1406
BspT107I	GGYRCC	1 cut(s)	1131
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	2 cut(s)	807, 1514
BsrDI	GCAATG	3 cut(s)	655, 932, 1954
BsrFI	RCCGGY	2 cut(s)	95, 1338
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	2 cut(s)	95, 1338
BssECI	CCNNGG	3 cut(s)	610, 1028, 1444
BssMI	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
BssNI	GRCGYC	2 cut(s)	1601, 2078
BssT1I	CCWWGG	1 cut(s)	1444
Bst2UI	CCWGG	3 cut(s)	1272, 1318, 1666
Bst4CI	ACNGT	1 cut(s)	963
BstACI	GRCGYC	2 cut(s)	1601, 2078
BstAFI	CTTAAG	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	1406
BstDEI	CTNAG	6 cut(s)	285, 456, 481, 798, 1380, 1781
BstDSI	CCRYGG	1 cut(s)	1444
BstF5I	GGATG	4 cut(s)	1059, 1080, 1192, 1717
BstFNI	CGCG	7 cut(s)	375, 1067, 1116, 1506, 1542, 1563, 1584
BstH2I	RGCGCY	1 cut(s)	1012
BstHHI	GCGC	5 cut(s)	1011, 1118, 1326, 1563, 2027
BstKTI	GATC	8 cut(s)	781, 790, 828, 926, 987, 1027, 1471, 1552
BstMAI	GTCTC	5 cut(s)	401, 452, 807, 1514, 1584
BstMBI	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
BstMCI	CGRYCG	5 cut(s)	73, 195, 379, 610, 1006
BstNI	CCWGG	3 cut(s)	1272, 1318, 1666
BstNSI	RCATGY	1 cut(s)	1934
BstPAI	GACNNNNGTC	2 cut(s)	464, 1068
BstSCI	CCNGG	6 cut(s)	449, 1028, 1263, 1270, 1316, 1664
BstSFI	CTRYAG	1 cut(s)	872
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	7 cut(s)	375, 1067, 1116, 1506, 1542, 1563, 1584
BstV1I	GCAGC	4 cut(s)	55, 190, 433, 1545
BstV2I	GAAGAC	5 cut(s)	549, 555, 702, 765, 1364
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BstZI	CGGCCG	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	1212
BsuTUI	ATCGAT	1 cut(s)	1212
BtgI	CCRYGG	1 cut(s)	1444
BtgZI	GCGATG	2 cut(s)	1521, 2131
BtsCI	GGATG	4 cut(s)	1059, 1080, 1192, 1717
BtsI	GCAGTG	1 cut(s)	1855
BtsIMutI	CAGTG	2 cut(s)	661, 1855
BveI	ACCTGC	1 cut(s)	2115
CfoI	GCGC	5 cut(s)	1011, 1118, 1326, 1563, 2027
Cfr10I	RCCGGY	2 cut(s)	95, 1338
ClaI	ATCGAT	1 cut(s)	1212
CseI	GACGC	4 cut(s)	803, 1073, 1590, 2086
Csp6I	GTAC	3 cut(s)	1132, 2159, 2170
CspAI	ACCGGT	1 cut(s)	1338
CviAII	CATG	6 cut(s)	111, 772, 1014, 1168, 1445, 1931
CviQI	GTAC	3 cut(s)	1132, 2159, 2170
DdeI	CTNAG	6 cut(s)	285, 456, 481, 798, 1380, 1781
DpnI	GATC	8 cut(s)	780, 789, 827, 925, 986, 1026, 1470, 1551
DpnII	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
EaeI	YGGCCR	3 cut(s)	376, 927, 1772
EagI	CGGCCG	1 cut(s)	376
EciI	GGCGGA	3 cut(s)	281, 301, 936
Ecl136II	GAGCTC	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	1444
Eco147I	AGGCCT	2 cut(s)	1664, 1738
Eco24I	GRGCYC	2 cut(s)	291, 492
Eco31I	GGTCTC	2 cut(s)	807, 1514
Eco47I	GGWCC	6 cut(s)	16, 509, 1261, 1282, 1336, 1341
Eco52I	CGGCCG	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	1090
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	3 cut(s)	246, 489, 1261
EcoRI	GAATTC	1 cut(s)	1408
EcoRII	CCWGG	3 cut(s)	1270, 1316, 1664
EcoT14I	CCWWGG	1 cut(s)	1444
EcoT38I	GRGCYC	2 cut(s)	291, 492
ErhI	CCWWGG	1 cut(s)	1444
FaeI	CATG	6 cut(s)	114, 775, 1017, 1171, 1448, 1934
FaqI	GGGAC	2 cut(s)	154, 1139
FatI	CATG	6 cut(s)	110, 771, 1013, 1167, 1444, 1930
FauI	CCCGC	6 cut(s)	45, 236, 1039, 1060, 1268, 1784
FokI	GGATG	4 cut(s)	1066, 1087, 1199, 1724
FriOI	GRGCYC	2 cut(s)	291, 492
FspBI	CTAG	3 cut(s)	128, 1647, 1854
GlaI	GCGC	5 cut(s)	1010, 1117, 1325, 1562, 2026
GsaI	CCCAGC	3 cut(s)	12, 489, 2118
GsuI	CTGGAG	3 cut(s)	235, 2030, 2116
HaeII	RGCGCY	1 cut(s)	1012
HgaI	GACGC	4 cut(s)	803, 1073, 1590, 2086
HhaI	GCGC	5 cut(s)	1011, 1118, 1326, 1563, 2027
Hin1I	GRCGYC	2 cut(s)	1601, 2078
Hin1II	CATG	6 cut(s)	114, 775, 1017, 1171, 1448, 1934
Hin6I	GCGC	5 cut(s)	1009, 1116, 1324, 1561, 2025
HinP1I	GCGC	5 cut(s)	1009, 1116, 1324, 1561, 2025
HindIII	AAGCTT	1 cut(s)	835
HphI	GGTGA	3 cut(s)	85, 1580, 2028
Hpy166II	GTNNAC	1 cut(s)	2159
Hpy8I	GTNNAC	1 cut(s)	2159
Hpy99I	CGWCG	7 cut(s)	371, 635, 797, 1067, 1088, 1109, 1606
HpyAV	CCTTC	7 cut(s)	153, 320, 769, 1137, 1644, 1977, 1987
HpyCH4III	ACNGT	1 cut(s)	963
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	139, 874, 1952
HpyF3I	CTNAG	6 cut(s)	285, 456, 481, 798, 1380, 1781
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	2 cut(s)	1601, 2078
Hsp92II	CATG	6 cut(s)	114, 775, 1017, 1171, 1448, 1934
HspAI	GCGC	5 cut(s)	1009, 1116, 1324, 1561, 2025
KpnI	GGTACC	1 cut(s)	1135
Kzo9I	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
LguI	GCTCTTC	1 cut(s)	2114
Lsp1109I	GCAGC	4 cut(s)	55, 190, 433, 1545
LweI	GCATC	3 cut(s)	1033, 1177, 1204
MaeI	CTAG	3 cut(s)	128, 1647, 1854
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	1056
MalI	GATC	8 cut(s)	780, 789, 827, 925, 986, 1026, 1470, 1551
MboI	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	291, 492
MluCI	AATT	5 cut(s)	88, 746, 1137, 1221, 1408
MlyI	GAGTC	6 cut(s)	530, 1301, 1339, 1484, 1775, 2052
MmeI	TCCRAC	6 cut(s)	654, 960, 1031, 1052, 1368, 1838
MseI	TTAA	2 cut(s)	210, 1251
MslI	CAYNNNNRTG	1 cut(s)	1935
MspA1I	CMGCKG	2 cut(s)	203, 2094
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	6 cut(s)	451, 1030, 1265, 1272, 1318, 1666
Mva1269I	GAATGC	2 cut(s)	1164, 1249
MvaI	CCWGG	3 cut(s)	1272, 1318, 1666
MvnI	CGCG	7 cut(s)	375, 1067, 1116, 1506, 1542, 1563, 1584
NciI	CCSGG	3 cut(s)	451, 1030, 1265
NcoI	CCATGG	1 cut(s)	1444
NdeII	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
NlaIII	CATG	6 cut(s)	114, 775, 1017, 1171, 1448, 1934
NlaIV	GGNNCC	8 cut(s)	18, 247, 490, 1133, 1236, 1263, 1269, 1464
NmuCI	GTSAC	1 cut(s)	1056
NspI	RCATGY	1 cut(s)	1934
NspV	TTCGAA	1 cut(s)	1406
PceI	AGGCCT	2 cut(s)	1664, 1738
PciI	ACATGT	1 cut(s)	1930
PciSI	GCTCTTC	1 cut(s)	2114
PctI	GAATGC	2 cut(s)	1164, 1249
PfeI	GAWTC	9 cut(s)	4, 330, 1209, 1484, 1571, 1592, 2017, 2041, 2131
PinAI	ACCGGT	1 cut(s)	1338
PleI	GAGTC	6 cut(s)	529, 1301, 1338, 1483, 1774, 2052
PpsI	GAGTC	6 cut(s)	529, 1301, 1338, 1483, 1774, 2052
PpuMI	RGGWCCY	1 cut(s)	1261
PscI	ACATGT	1 cut(s)	1930
PshAI	GACNNNNGTC	2 cut(s)	464, 1068
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	1261
Psp6I	CCWGG	3 cut(s)	1270, 1316, 1664
PspFI	CCCAGC	3 cut(s)	8, 485, 2114
PspGI	CCWGG	3 cut(s)	1270, 1316, 1664
PspN4I	GGNNCC	8 cut(s)	18, 247, 490, 1133, 1236, 1263, 1269, 1464
PspOMI	GGGCCC	1 cut(s)	488
PspPPI	RGGWCCY	1 cut(s)	1261
PstI	CTGCAG	1 cut(s)	876
PsuI	RGATCY	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	2094
RsaI	GTAC	3 cut(s)	1133, 2160, 2171
RsaNI	GTAC	3 cut(s)	1132, 2159, 2170
RseI	CAYNNNNRTG	1 cut(s)	1935
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	2114
SaqAI	TTAA	2 cut(s)	210, 1251
Sau3AI	GATC	8 cut(s)	778, 787, 825, 923, 984, 1024, 1468, 1549
SchI	GAGTC	6 cut(s)	530, 1301, 1339, 1484, 1775, 2052
ScrFI	CCNGG	6 cut(s)	451, 1030, 1265, 1272, 1318, 1666
SduI	GDGCHC	2 cut(s)	291, 492
SfaNI	GCATC	3 cut(s)	1033, 1177, 1204
SfcI	CTRYAG	1 cut(s)	872
SfuI	TTCGAA	1 cut(s)	1406
SinI	GGWCC	6 cut(s)	16, 509, 1261, 1282, 1336, 1341
SmiMI	CAYNNNNRTG	1 cut(s)	1935
SmlI	CTYRAG	2 cut(s)	209, 899
SmoI	CTYRAG	2 cut(s)	209, 899
Sse9I	AATT	5 cut(s)	88, 746, 1137, 1221, 1408
SseBI	AGGCCT	2 cut(s)	1664, 1738
SspMI	CTAG	3 cut(s)	128, 1647, 1854
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	2 cut(s)	1664, 1738
StyD4I	CCNGG	6 cut(s)	449, 1028, 1263, 1270, 1316, 1664
StyI	CCWWGG	1 cut(s)	1444
TaaI	ACNGT	1 cut(s)	963
TaiI	ACGT	1 cut(s)	372
TaqII	GACCGA	3 cut(s)	624, 992, 1270
TasI	AATT	5 cut(s)	88, 746, 1137, 1221, 1408
TatI	WGTACW	2 cut(s)	2158, 2169
TfiI	GAWTC	9 cut(s)	4, 330, 1209, 1484, 1571, 1592, 2017, 2041, 2131
Tru1I	TTAA	2 cut(s)	210, 1251
Tru9I	TTAA	2 cut(s)	210, 1251
TscAI	CASTG	2 cut(s)	661, 1855
TseFI	GTSAC	1 cut(s)	1056
TseI	GCWGC	4 cut(s)	43, 203, 446, 1558
Tsp45I	GTSAC	1 cut(s)	1056
TspDTI	ATGAA	6 cut(s)	17, 788, 1256, 1409, 1672, 1731
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	661, 1855
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	6 cut(s)	16, 509, 1261, 1282, 1336, 1341
XapI	RAATTY	3 cut(s)	88, 1221, 1408
XbaI	TCTAGA	1 cut(s)	1646
XceI	RCATGY	1 cut(s)	1934
XcmI	CCANNNNNNNNNTGG	2 cut(s)	937, 1174
XspI	CTAG	3 cut(s)	128, 1647, 1854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.