Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 177 |
| AgsI | TTSAA | 2 cut(s) | 29, 159 |
| AluBI | AGCT | 1 cut(s) | 32 |
| AluI | AGCT | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 177 |
| Ama87I | CYCGRG | 2 cut(s) | 253, 263 |
| AoxI | GGCC | 1 cut(s) | 52 |
| AvaI | CYCGRG | 2 cut(s) | 253, 263 |
| BmeT110I | CYCGRG | 2 cut(s) | 253, 263 |
| BmsI | GCATC | 1 cut(s) | 233 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 1 cut(s) | 234 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 117, 147 |
| BseDI | CCNNGG | 1 cut(s) | 234 |
| BshFI | GGCC | 1 cut(s) | 54 |
| BsiHKCI | CYCGRG | 2 cut(s) | 253, 263 |
| BsnI | GGCC | 1 cut(s) | 54 |
| BsoBI | CYCGRG | 2 cut(s) | 253, 263 |
| Bsp143I | GATC | 1 cut(s) | 182 |
| BspANI | GGCC | 1 cut(s) | 54 |
| BspPI | GGATC | 1 cut(s) | 177 |
| BssECI | CCNNGG | 1 cut(s) | 234 |
| BssMI | GATC | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| Bst6I | CTCTTC | 2 cut(s) | 66, 83 |
| BstKTI | GATC | 1 cut(s) | 185 |
| BstMBI | GATC | 1 cut(s) | 182 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstX2I | RGATCY | 1 cut(s) | 182 |
| BstYI | RGATCY | 1 cut(s) | 182 |
| BsuRI | GGCC | 1 cut(s) | 54 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 186, 221 |
| CviAII | CATG | 3 cut(s) | 15, 102, 151 |
| CviJI | RGCY | 3 cut(s) | 5, 32, 54 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 32, 54 |
| DpnI | GATC | 1 cut(s) | 184 |
| DpnII | GATC | 1 cut(s) | 182 |
| Eam1104I | CTCTTC | 2 cut(s) | 66, 83 |
| EarI | CTCTTC | 2 cut(s) | 66, 83 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco147I | AGGCCT | 1 cut(s) | 54 |
| Eco88I | CYCGRG | 2 cut(s) | 253, 263 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaeI | CATG | 3 cut(s) | 18, 105, 154 |
| FaiI | YATR | 6 cut(s) | 16, 103, 152, 202, 243, 260 |
| FatI | CATG | 3 cut(s) | 14, 101, 150 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 1 cut(s) | 54 |
| Hin1II | CATG | 3 cut(s) | 18, 105, 154 |
| HinfI | GANTC | 1 cut(s) | 94 |
| Hpy188I | TCNGA | 1 cut(s) | 187 |
| Hpy188III | TCNNGA | 2 cut(s) | 173, 265 |
| HpyAV | CCTTC | 1 cut(s) | 146 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 38, 224 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| Hsp92II | CATG | 3 cut(s) | 18, 105, 154 |
| Kzo9I | GATC | 1 cut(s) | 182 |
| LmnI | GCTCC | 1 cut(s) | 82 |
| LpnPI | CCDG | 1 cut(s) | 186 |
| LweI | GCATC | 1 cut(s) | 233 |
| MaeIII | GTNAC | 1 cut(s) | 209 |
| MalI | GATC | 1 cut(s) | 184 |
| MboI | GATC | 1 cut(s) | 182 |
| MboII | GAAGA | 2 cut(s) | 83, 100 |
| MfeI | CAATTG | 1 cut(s) | 39 |
| MflI | RGATCY | 1 cut(s) | 182 |
| MluCI | AATT | 2 cut(s) | 39, 164 |
| MmeI | TCCRAC | 1 cut(s) | 28 |
| MnlI | CCTC | 6 cut(s) | 44, 61, 65, 67, 84, 180 |
| MseI | TTAA | 1 cut(s) | 143 |
| MunI | CAATTG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 1 cut(s) | 182 |
| NlaIII | CATG | 3 cut(s) | 18, 105, 154 |
| PaeR7I | CTCGAG | 2 cut(s) | 253, 263 |
| PceI | AGGCCT | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 94 |
| PspXI | VCTCGAGB | 1 cut(s) | 253 |
| PsuI | RGATCY | 1 cut(s) | 182 |
| SaqAI | TTAA | 1 cut(s) | 143 |
| Sau3AI | GATC | 1 cut(s) | 182 |
| SetI | ASST | 4 cut(s) | 34, 122, 150, 236 |
| SfaNI | GCATC | 1 cut(s) | 233 |
| Sfr274I | CTCGAG | 2 cut(s) | 253, 263 |
| SlaI | CTCGAG | 2 cut(s) | 253, 263 |
| SmlI | CTYRAG | 2 cut(s) | 253, 263 |
| SmoI | CTYRAG | 2 cut(s) | 253, 263 |
| Sse9I | AATT | 2 cut(s) | 39, 164 |
| SseBI | AGGCCT | 1 cut(s) | 54 |
| SspI | AATATT | 1 cut(s) | 248 |
| StuI | AGGCCT | 1 cut(s) | 54 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaqI | TCGA | 2 cut(s) | 254, 264 |
| TasI | AATT | 2 cut(s) | 39, 164 |
| TfiI | GAWTC | 1 cut(s) | 94 |
| Tru1I | TTAA | 1 cut(s) | 143 |
| Tru9I | TTAA | 1 cut(s) | 143 |
| XhoI | CTCGAG | 2 cut(s) | 253, 263 |