Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Forward (+)

25709312 .. 25710147

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTACCAAAGTCAGATGACGAGTGGAGCAAAGGAAACTGGACAGGAGGATGTGTGTTTGGTCTGGTCCAAAGACCTTATTGACATACAACAGTTTTCCTCTGGAGGAGAAGATCTTTATGTTCGCCTAGCACAGGCAGAGCTCAGTGAAGGAAGGCCAATAAAGTTAATTGCCAGCCTTGTACCAGATTTTCTTGAATATAAGCCATTAAAGGCAGAAGGCACATATGAGCACTGCGAGTTAAACTGCCTACATAATTGTTCTTGCCAGGCTTATGCTTTCGTCAATGATATAGGTTGTTTGGTATGGTCCAAAGACTTTATAGATATACAGGAGTTTCCCTCTGGCAGAATAGATCTTTTTATCCGCCTAGCCGACTCAGGTGATATTGGAAACCAAATAAAGGCTTGTTTGGGATTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

4.47

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	61 - 110	1.1e-13	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	367
AfaI	GTAC	2 cut(s)	5, 183
AfiI	CCNNNNNNNGG	2 cut(s)	133, 403
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	2 cut(s)	144, 234
AoxI	GGCC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	66, 309
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	66, 309
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	144, 234
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	128, 371
BglII	AGATCT	2 cut(s)	112, 355
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	66, 309
BmgT120I	GGNCC	2 cut(s)	66, 309
BmrFI	CCNGG	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 403
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	133, 403
BseMII	CTCAG	2 cut(s)	157, 393
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	144, 234
BslI	CCNNNNNNNGG	2 cut(s)	133, 403
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	144, 234
Bsp143I	GATC	2 cut(s)	112, 355
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	156, 392
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	112, 355
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	143, 379
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	115, 358
BstMBI	GATC	2 cut(s)	112, 355
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	112, 355
BstYI	RGATCY	2 cut(s)	112, 355
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	151, 232
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	66, 309
Csp6I	GTAC	2 cut(s)	4, 182
CviJI	RGCY	7 cut(s)	142, 157, 177, 205, 272, 374, 407
CviKI_1	RGCY	7 cut(s)	142, 157, 177, 205, 272, 374, 407
CviQI	GTAC	2 cut(s)	4, 182
DdeI	CTNAG	2 cut(s)	143, 379
DpnI	GATC	2 cut(s)	114, 357
DpnII	GATC	2 cut(s)	112, 355
EciI	GGCGGA	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	66, 309
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	144
FauNDI	CATATG	1 cut(s)	226
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	128, 371
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	377
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	102, 194
HpyAV	CCTTC	3 cut(s)	143, 147, 212
HpyCH4III	ACNGT	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	143, 379
Kzo9I	GATC	2 cut(s)	112, 355
LmnI	GCTCC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	128, 371
MalI	GATC	2 cut(s)	114, 357
MboI	GATC	2 cut(s)	112, 355
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	2 cut(s)	112, 355
MhlI	GDGCHC	2 cut(s)	144, 234
MluCI	AATT	2 cut(s)	168, 256
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	4 cut(s)	40, 98, 109, 352
MseI	TTAA	3 cut(s)	167, 209, 242
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	2 cut(s)	112, 355
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	66, 309
PsuI	RGATCY	2 cut(s)	112, 355
RsaI	GTAC	2 cut(s)	5, 183
RsaNI	GTAC	2 cut(s)	4, 182
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	167, 209, 242
Sau3AI	GATC	2 cut(s)	112, 355
Sau96I	GGNCC	2 cut(s)	66, 309
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	144, 234
SetI	ASST	4 cut(s)	78, 144, 298, 385
SinI	GGWCC	2 cut(s)	66, 309
Sse9I	AATT	2 cut(s)	168, 256
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	2 cut(s)	128, 371
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	93
TasI	AATT	2 cut(s)	168, 256
Tru1I	TTAA	3 cut(s)	167, 209, 242
Tru9I	TTAA	3 cut(s)	167, 209, 242
TscAI	CASTG	2 cut(s)	151, 239
TspRI	CASTG	2 cut(s)	151, 239
VpaK11BI	GGWCC	2 cut(s)	66, 309
XagI	CCTNNNNNAGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	128, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.