Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Forward (+)

38674208 .. 38684539

Gene Structure 10332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0243100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGAGTTTCTCTAACCTCACCCTGCTCCTCACCCTCACCCTCCTCATCTCAACCCTCACCGCCCCCTCCTCCGCCGCCACCCTCAACTGCACTACCCTCTCCGCCAATTCCACCTGCCAATCCCTCATCGACTTCGCCCCCACAAACGCCACCACTCTCAACGCCGTCAAGACCCTCTTCAACATCACCCACCTCCGCACCTTACTCGGAGCCAACAACCTCCCCCTCTCGACCCGACCCGATCAACCCGTCGCCGCCAACCAGAAGCTCCGAATCCCCTTCTCCTGCCGCTGCTTCAACGGCTCCGGCGTCTCCTACCGCCGCCCCCAGTACATCGTCAAGGCCGGCGACGGCCTCGACTACATAGCCAGCTTGTTCTCGCGCCTGGTCACGTTCCAGGAGATCGCCCAGGTCAATGGCATACCCGACCCGGATAAGATCGAGGTCGGGCAGGAGCTGTGGATCCCACTGCCGTGTAGCTGCGACAAAGTGGACGGCGAGGAAGTAGTGCATTACGGACACGTGGTGGACCCTGGGAGCTCGGTACAGGGGATCGCCGAAGAGTATGGGGTCACCCAAGAGACGCTCCTTCGGATCAATGGAATGACTGACCCCACTAAACTCATGGCTGATCAGGTCCTTGATGTTCCTCTCAGAGCTTGTGCATCGTCAGTACGAAATGACTCGATAGATTCCCCGTTACTTGTTCCTAATAACACCTATGTCTTCACTGCTTACAATTGTGTGAAGTGCCAATGTAGTTCTGCGAACAACTGGACATTACAATGCGAGCCATCAAATCTTAATTCAACTCTGTGGACGAAATGCCCTTCGATGCAATGCCAAGGTTCAAATCAATTATACATTGGCAACACCGCATCTTCCTCCTCCTGCAATCAAACAACTTGTGCCTATAGGGGGTACGATAACCAAACCATTTTTACAGATCTGGTAGCTCAGTCCACCTGTTCAAGAAAAAGCAAACTCTCATCCAAAGTCATTGTTAGTATTCTTGCTCCTGTTGCTCTTTGTGTGCTAGTTGTGGTTCTGGCCGGATTCTATTTTGGCAAGAGACTCAGAAGAGCAAAACGACAAAAGAACAAAGCTGGAAATGATATAACGTCCACGGTTGAGTCCCTGCAATTTGACTTGGGAACAATCGTAGCAGCCACAAAGAAGTTTTCTGGTAATAACAAGTTAGGTGAAGGTGGATTTGGTGAAGTTTTCAAGGGAACCCTTGATAATGGACAAGAAATAGCAGTGAAGAGACTGTCAAAAGGTTCCGGACAAGGTGTACGAGAATTTAAGAATGAGGTTGTATTGGTTGCCAAGCTTCAACATCGAAATCTTGTCAGGCTTCTGGGATTTTGTTTGGAAGGAGAAGAGACCATACTTGTCTATGAATATGTACCCAACAAAAGTCTTGATCATTTTCTTTTTGAATCTGATAAACGAGAACAGCTAGAGTGGTCGAGACGTAATGCGATTATAGGAGGGATCGCTGGAGGACTTGTATATCTTCATGAAGATTCAAGGCTTAGAGTCATACATCGTGATTTGAAAGCTAGCAATATTTTGCTAGACGTGAATATGAATCCTAAAATTTCAGATTTTGGGCTGGCAAAAATGTTCGGAGTTGATGATCAAACTCAAGGAAGCACCGAAAGAATTGTCGGTACTTATGGCTACATGGCTCCTGAATATGCGATGAAGGGATTGTATTCTGTAAAGTCTGACGTCTTTAGCTTCGGAATACTCTTGCTTGAGATTCTAACAGGAAGAAAAAACTTTTTAGGGTTTCATCGTACAAATTGTCCATCAACGCTCATCAGTTATGCTTGGCAATTATGGAATGAAGGGAAAGTGTTGGAGTTGATGGATCCATTGCTGAAAGATTCTTGCAGTTCAAATGAGTTCTTGAGATACATTCACATCGGGTTACTGTGTGTTCAAGAAGACGCAAACAAAAGGCCAACTATGTCATCGGTTGTATTAATGTTACAGAGTAAATCCATCAGTCTTTCTAAACCTGAACGACCTGCTTTCTTACTTACAGGAAGATCTCCCAATGATCACAATGATCACATTGGTGCTCCTAGTTGTTCAGCCAATGGTTTGACTATATCTGTTGATGTGCCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

714

Amino Acids

78.35

Weight (kDa)

8.23

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM	PF01476	111 - 156	7.5e-10	LysM domain
LysM	PF01476	174 - 217	4e-08	LysM domain
PK_Tyr_Ser-Thr	PF07714	397 - 664	1.6e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	397 - 663	4.7e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	1740
Acc36I	ACCTGC	2 cut(s)	122, 2047
AccII	CGCG	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	1283
AclWI	GGATC	7 cut(s)	457, 470, 560, 602, 1505, 1874, 1887
AcoI	YGGCCR	1 cut(s)	1050
AcsI	RAATTY	2 cut(s)	1301, 1602
AcvI	CACGTG	1 cut(s)	523
AcyI	GRCGYC	2 cut(s)	309, 1737
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	8 cut(s)	332, 546, 675, 923, 1296, 1410, 1678, 1807
AfiI	CCNNNNNNNGG	1 cut(s)	918
AflIII	ACRYGT	1 cut(s)	520
AjiI	CACGTC	1 cut(s)	1585
AjnI	CCWGG	4 cut(s)	384, 396, 408, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	1197, 1229
AleI	CACNNNNGTG	2 cut(s)	472, 2088
Alw21I	GWGCWC	2 cut(s)	542, 2095
Alw26I	GTCTC	6 cut(s)	316, 575, 1066, 1261, 1379, 1468
AlwI	GGATC	7 cut(s)	457, 470, 560, 602, 1505, 1874, 1887
AlwNI	CAGNNNCTG	1 cut(s)	457
Aor13HI	TCCGGA	1 cut(s)	1283
AoxI	GGCC	4 cut(s)	342, 352, 1050, 1970
ApeKI	GCWGC	3 cut(s)	291, 480, 1166
ApoI	RAATTY	2 cut(s)	1301, 1602
ArsI	GACNNNNNNTTYG	2 cut(s)	1656, 1688
AseI	ATTAAT	1 cut(s)	1994
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	529, 637
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	8 cut(s)	10, 22, 28, 49, 178, 565, 1214, 1229
AsuNHI	GCTAGC	1 cut(s)	1565
AvaII	GGWCC	2 cut(s)	529, 637
BamHI	GGATCC	2 cut(s)	462, 1879
BanII	GRGCYC	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	1374, 1406
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	2 cut(s)	718, 1962
Bbv12I	GWGCWC	2 cut(s)	542, 2095
BbvI	GCAGC	3 cut(s)	278, 467, 1178
BccI	CCATC	4 cut(s)	802, 1825, 1870, 2021
BceAI	ACGGC	5 cut(s)	149, 316, 367, 457, 511
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	4 cut(s)	386, 398, 410, 534
BclI	TGATCA	5 cut(s)	631, 1426, 1642, 2071, 2080
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	6 cut(s)	316, 575, 1066, 1261, 1379, 1468
BfaI	CTAG	5 cut(s)	1037, 1463, 1566, 1580, 2097
BfmI	CTRYAG	1 cut(s)	913
BfuAI	ACCTGC	2 cut(s)	122, 2047
BglII	AGATCT	2 cut(s)	946, 2060
BisI	GCNGC	7 cut(s)	75, 255, 289, 292, 322, 481, 1167
BlsI	GCNGC	7 cut(s)	76, 256, 290, 293, 323, 482, 1168
Bme1390I	CCNGG	5 cut(s)	386, 398, 410, 431, 534
Bme18I	GGWCC	2 cut(s)	529, 637
BmgBI	CACGTC	1 cut(s)	1585
BmgT120I	GGNCC	2 cut(s)	529, 637
BmiI	GGNNCC	8 cut(s)	211, 304, 464, 531, 1234, 1282, 1695, 1881
BmrFI	CCNGG	5 cut(s)	386, 398, 410, 431, 534
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	674, 825, 887
BmtI	GCTAGC	1 cut(s)	1569
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	718, 1962
BpmI	CTGGAG	1 cut(s)	1524
BpuEI	CTTGAG	3 cut(s)	1635, 1784, 1939
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	523
BsaHI	GRCGYC	2 cut(s)	309, 1737
BsaI	GGTCTC	1 cut(s)	1379
BsaJI	CCNNGG	5 cut(s)	408, 532, 533, 844, 1125
BsaWI	WCCGGW	1 cut(s)	1283
BsaXI	ACNNNNNCTCC	2 cut(s)	1497, 1527
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	328, 779
Bse3DI	GCAATG	2 cut(s)	845, 1883
BseAI	TCCGGA	1 cut(s)	1283
BseBI	CCWGG	4 cut(s)	386, 398, 410, 534
BseDI	CCNNGG	5 cut(s)	408, 532, 533, 844, 1125
BseGI	GGATG	1 cut(s)	989
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	2 cut(s)	845, 1883
BseMII	CTCAG	3 cut(s)	667, 971, 1090
BseNI	ACTGG	2 cut(s)	328, 779
BseRI	GAGGAG	4 cut(s)	17, 32, 58, 877
BseXI	GCAGC	3 cut(s)	278, 467, 1178
BsgI	GTGCAG	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	4 cut(s)	344, 354, 1052, 1972
BsiHKAI	GWGCWC	2 cut(s)	542, 2095
BsiSI	CCGG	5 cut(s)	306, 345, 431, 1053, 1284
BslFI	GGGAC	1 cut(s)	1120
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	6 cut(s)	316, 575, 1066, 1261, 1379, 1468
BsmBI	CGTCTC	3 cut(s)	316, 575, 1468
BsmFI	GGGAC	1 cut(s)	1120
BsnI	GGCC	4 cut(s)	344, 354, 1052, 1972
Bso31I	GGTCTC	1 cut(s)	1379
Bsp1286I	GDGCHC	2 cut(s)	542, 2095
Bsp13I	TCCGGA	1 cut(s)	1283
BspANI	GGCC	4 cut(s)	344, 354, 1052, 1972
BspCNI	CTCAG	3 cut(s)	666, 970, 1089
BspEI	TCCGGA	1 cut(s)	1283
BspFNI	CGCG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	1522
BspLI	GGNNCC	8 cut(s)	211, 304, 464, 531, 1234, 1282, 1695, 1881
BspMI	ACCTGC	2 cut(s)	122, 2047
BspOI	GCTAGC	1 cut(s)	1569
BspPI	GGATC	7 cut(s)	457, 470, 560, 602, 1505, 1874, 1887
BspQI	GCTCTTC	1 cut(s)	1075
BspTNI	GGTCTC	1 cut(s)	1379
BsrDI	GCAATG	2 cut(s)	845, 1883
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	328, 779
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	5 cut(s)	408, 532, 533, 844, 1125
BssNI	GRCGYC	2 cut(s)	309, 1737
BssT1I	CCWWGG	1 cut(s)	844
Bst2UI	CCWGG	4 cut(s)	386, 398, 410, 534
Bst4CI	ACNGT	3 cut(s)	1129, 1272, 1944
Bst6I	CTCTTC	5 cut(s)	182, 555, 1075, 1259, 1377
BstACI	GRCGYC	2 cut(s)	309, 1737
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	5 cut(s)	346, 370, 791, 1567, 1620
BstDEI	CTNAG	4 cut(s)	653, 957, 1076, 1538
BstDSI	CCRYGG	1 cut(s)	1125
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	989
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	384
BstMAI	GTCTC	6 cut(s)	316, 575, 1066, 1261, 1379, 1468
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 1022
BstNI	CCWGG	4 cut(s)	386, 398, 410, 534
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	5 cut(s)	384, 396, 408, 429, 532
BstSFI	CTRYAG	1 cut(s)	913
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	278, 467, 1178
BstV2I	GAAGAC	2 cut(s)	718, 1962
BstX2I	RGATCY	4 cut(s)	462, 946, 1879, 2060
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	4 cut(s)	462, 946, 1879, 2060
BsuRI	GGCC	4 cut(s)	344, 354, 1052, 1972
BtgI	CCRYGG	1 cut(s)	1125
BtgZI	GCGATG	1 cut(s)	1721
BtrI	CACGTC	1 cut(s)	1585
BtsCI	GGATG	1 cut(s)	989
BtsI	GCAGTG	3 cut(s)	467, 729, 1266
BtsIMutI	CAGTG	3 cut(s)	467, 729, 1266
BveI	ACCTGC	2 cut(s)	122, 2047
Cac8I	GCNNGC	5 cut(s)	346, 370, 791, 1567, 1620
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	1522
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	529, 637
CseI	GACGC	3 cut(s)	298, 592, 1967
Csp6I	GTAC	8 cut(s)	331, 545, 674, 922, 1295, 1409, 1677, 1806
CviAII	CATG	3 cut(s)	625, 1523, 1690
CviQI	GTAC	8 cut(s)	331, 545, 674, 922, 1295, 1409, 1677, 1806
DdeI	CTNAG	4 cut(s)	653, 957, 1076, 1538
DraIII	CACNNNGTG	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	1050
Eam1104I	CTCTTC	5 cut(s)	182, 555, 1075, 1259, 1377
EarI	CTCTTC	5 cut(s)	182, 555, 1075, 1259, 1377
EciI	GGCGGA	2 cut(s)	61, 91
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	844
Eco24I	GRGCYC	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	1379
Eco47I	GGWCC	2 cut(s)	529, 637
Eco53kI	GAGCTC	1 cut(s)	540
Eco72I	CACGTG	1 cut(s)	523
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	637
EcoO65I	GGTNACC	1 cut(s)	571
EcoRII	CCWGG	4 cut(s)	384, 396, 408, 532
EcoT14I	CCWWGG	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	844
Esp3I	CGTCTC	3 cut(s)	316, 575, 1468
FaeI	CATG	3 cut(s)	628, 1526, 1693
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	1120
FatI	CATG	3 cut(s)	624, 1522, 1689
FbaI	TGATCA	5 cut(s)	631, 1426, 1642, 2071, 2080
Fnu4HI	GCNGC	7 cut(s)	75, 255, 289, 292, 322, 481, 1167
FokI	GGATG	1 cut(s)	976
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	7 cut(s)	75, 255, 289, 292, 322, 481, 1167
FspBI	CTAG	5 cut(s)	1037, 1463, 1566, 1580, 2097
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	7 cut(s)	75, 255, 289, 292, 322, 481, 1167
GsuI	CTGGAG	1 cut(s)	1524
HaeIII	GGCC	4 cut(s)	344, 354, 1052, 1972
HapII	CCGG	5 cut(s)	306, 345, 431, 1053, 1284
HgaI	GACGC	3 cut(s)	298, 592, 1967
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	2 cut(s)	309, 1737
Hin1II	CATG	3 cut(s)	628, 1526, 1693
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	1331
HpaII	CCGG	5 cut(s)	306, 345, 431, 1053, 1284
HphI	GGTGA	8 cut(s)	10, 22, 28, 49, 178, 565, 1214, 1229
Hpy166II	GTNNAC	6 cut(s)	493, 529, 819, 963, 1125, 1295
Hpy8I	GTNNAC	6 cut(s)	493, 529, 819, 963, 1125, 1295
Hpy99I	CGWCG	2 cut(s)	254, 353
HpyAV	CCTTC	7 cut(s)	289, 599, 840, 1199, 1370, 1705, 1850
HpyCH4III	ACNGT	3 cut(s)	1129, 1272, 1944
HpyCH4IV	ACGT	6 cut(s)	392, 522, 1121, 1477, 1584, 1737
HpyCH4V	TGCA	7 cut(s)	90, 511, 665, 838, 894, 1141, 1902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 1022
HpyF3I	CTNAG	4 cut(s)	653, 957, 1076, 1538
HpySE526I	ACGT	6 cut(s)	392, 522, 1121, 1477, 1584, 1737
Hsp92I	GRCGYC	2 cut(s)	309, 1737
Hsp92II	CATG	3 cut(s)	628, 1526, 1693
HspAI	GCGC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	1283
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
Ksp22I	TGATCA	5 cut(s)	631, 1426, 1642, 2071, 2080
LguI	GCTCTTC	1 cut(s)	1075
Lsp1109I	GCAGC	3 cut(s)	278, 467, 1178
LweI	GCATC	3 cut(s)	674, 825, 887
MaeI	CTAG	5 cut(s)	1037, 1463, 1566, 1580, 2097
MaeII	ACGT	6 cut(s)	392, 522, 1121, 1477, 1584, 1737
MaeIII	GTNAC	5 cut(s)	388, 571, 699, 1938, 1998
MfeI	CAATTG	1 cut(s)	739
MflI	RGATCY	4 cut(s)	462, 946, 1879, 2060
MhlI	GDGCHC	2 cut(s)	542, 2095
MlyI	GAGTC	4 cut(s)	677, 1068, 1142, 1551
MmeI	TCCRAC	1 cut(s)	1848
MroI	TCCGGA	1 cut(s)	1283
MroNI	GCCGGC	1 cut(s)	344
MseI	TTAA	3 cut(s)	804, 1305, 1994
MslI	CAYNNNNRTG	3 cut(s)	472, 784, 2088
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	5 cut(s)	306, 345, 431, 1053, 1284
MspR9I	CCNGG	5 cut(s)	386, 398, 410, 431, 534
MunI	CAATTG	1 cut(s)	739
MvaI	CCWGG	4 cut(s)	386, 398, 410, 534
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	300, 1022
NaeI	GCCGGC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	431
NgoMIV	GCCGGC	1 cut(s)	344
NheI	GCTAGC	1 cut(s)	1565
NlaIII	CATG	3 cut(s)	628, 1526, 1693
NlaIV	GGNNCC	8 cut(s)	211, 304, 464, 531, 1234, 1282, 1695, 1881
NmuCI	GTSAC	2 cut(s)	388, 571
OliI	CACNNNNGTG	2 cut(s)	472, 2088
PagI	TCATGA	1 cut(s)	1522
PaqCI	CACCTGC	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	1075
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	8 cut(s)	273, 692, 1056, 1442, 1529, 1594, 1768, 1895
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	7 cut(s)	76, 256, 290, 293, 323, 482, 1168
PleI	GAGTC	4 cut(s)	677, 1068, 1141, 1550
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	4 cut(s)	677, 1068, 1141, 1550
Ppu21I	YACGTR	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	637
PshBI	ATTAAT	1 cut(s)	1994
Psp124BI	GAGCTC	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	4 cut(s)	384, 396, 408, 532
PspCI	CACGTG	1 cut(s)	523
PspEI	GGTNACC	1 cut(s)	571
PspGI	CCWGG	4 cut(s)	384, 396, 408, 532
PspN4I	GGNNCC	8 cut(s)	211, 304, 464, 531, 1234, 1282, 1695, 1881
PspPI	GGNCC	2 cut(s)	529, 637
PspPPI	RGGWCCY	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	4 cut(s)	462, 946, 1879, 2060
RsaI	GTAC	8 cut(s)	332, 546, 675, 923, 1296, 1410, 1678, 1807
RsaNI	GTAC	8 cut(s)	331, 545, 674, 922, 1295, 1409, 1677, 1806
RseI	CAYNNNNRTG	3 cut(s)	472, 784, 2088
SacI	GAGCTC	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	1075
SaqAI	TTAA	3 cut(s)	804, 1305, 1994
SatI	GCNGC	7 cut(s)	75, 255, 289, 292, 322, 481, 1167
Sau96I	GGNCC	2 cut(s)	529, 637
SchI	GAGTC	4 cut(s)	677, 1068, 1142, 1551
ScrFI	CCNGG	5 cut(s)	386, 398, 410, 431, 534
SduI	GDGCHC	2 cut(s)	542, 2095
SfaNI	GCATC	3 cut(s)	674, 825, 887
SfcI	CTRYAG	1 cut(s)	913
SinI	GGWCC	2 cut(s)	529, 637
SmiMI	CAYNNNNRTG	3 cut(s)	472, 784, 2088
SmlI	CTYRAG	3 cut(s)	1650, 1763, 1918
SmoI	CTYRAG	3 cut(s)	1650, 1763, 1918
SspI	AATATT	1 cut(s)	1573
SspMI	CTAG	5 cut(s)	1037, 1463, 1566, 1580, 2097
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	5 cut(s)	384, 396, 408, 429, 532
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	3 cut(s)	1129, 1272, 1944
TaiI	ACGT	6 cut(s)	395, 525, 1124, 1480, 1587, 1740
TaqI	TCGA	8 cut(s)	129, 230, 357, 441, 686, 833, 1342, 1472
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	4 cut(s)	77, 257, 291, 324
TfiI	GAWTC	8 cut(s)	273, 692, 1056, 1442, 1529, 1594, 1768, 1895
Tru1I	TTAA	3 cut(s)	804, 1305, 1994
Tru9I	TTAA	3 cut(s)	804, 1305, 1994
TscAI	CASTG	3 cut(s)	474, 736, 1266
TseFI	GTSAC	2 cut(s)	388, 571
TseI	GCWGC	3 cut(s)	291, 480, 1166
Tsp45I	GTSAC	2 cut(s)	388, 571
TspDTI	ATGAA	7 cut(s)	1416, 1511, 1539, 1607, 1724, 1790, 1869
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	3 cut(s)	474, 736, 1266
VpaK11BI	GGWCC	2 cut(s)	529, 637
VspI	ATTAAT	1 cut(s)	1994
XapI	RAATTY	2 cut(s)	1301, 1602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XspI	CTAG	5 cut(s)	1037, 1463, 1566, 1580, 2097
ZraI	GACGTC	1 cut(s)	1738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.