Rorug05G0173900

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
16194424 .. 16196691
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0173900.1

Sequence Viewer

Length: 1212 bp
ATGGTGACAGAAATTCGAACAGATTCTTTGGACTACCGGACGGAGTTGTTGTCGCCGGACCTGACAGCAGGGAGTGTGACACTGCCAAGTGATTCGCCGGCATGGCGGCTCAATATGGATGGAGTCAAGCTTCCAGCTGAGAGAAACAATATGAGTTCTTGTTTTGGCATAGGCTCTTATGTTGAGTCATTAAGGAGGCAAAAGAAAGTTGCAGAATATTACAAGAGGCAGAATAAACTTCTCAAAGGATTCAATGAATTAGACTCATTTTCTGAATTGGGTTCTTGGCCTGGAAGTTTAACAGAGGATGAGAAGAAAGAACTTGCAACCAGCGAAAAGATAGCAATATATGCATCGAATGCAGCTAACTTGGTGCTGTTCCTAGCAAAAGTGTATGCTTCAGTTGAGAGCAGATCCTTGGCAGTTATAGCTTCAACTTTGGATTCCCTCCTAGACCTCTTGTCAGGGTTCATCCTTTGGTTTACAGCTCATGCAATGAGAAAACCAAATCAGTATAGCTACCCGATTGGCAAGCATCGGATGCAGCCCGTGGGAATTGTTGTTTTTGCATCAGTAATGGCAACTCTTGGACTACAAATTTTGTTTGAATCGGGGCGGCAACTTGTCAGTAAGACTCAACCTGATAAGGACCCGGAGAAAGAAAAATGGATGATAGGGATCATGGTCTCTGCCACAGTAATCAAGTTCATTCTAATGGCATACTGCCGCAGATTCAAAAACGAGATTGTTCTAACATATGCTCAAGATCATCTATTTGATGTCATCACTAATGGAATTGGTCTTGCATCCGCAGTTTTAGCAATCAGGTTTTATTGGTGGATCGATCCTGTTGGAGCCATCATTATTGCTTTGTATACAATTGGGAATTGGGCAAACACTGTGATGGAGAATGTGTGGTCACTAATTGGCAAGACAGCACCAGCAGAGTACTTAGCCAAGTTGACATATCTAATTTGGAACCATGACAAGCAGATCAAGCACATTGACACAGTGAGAGCATATACATTTGGTATTAACTACTTTGTGGAGGTCGACATAGTCTTACCCGGAGAGATGTCCCTTAGTGAAGCACATAATATTGGAGAGGCACTCCAAGAAAAGCTTGAGAATCTTCCTGAGGTTGAACGAGCTTTTGTTCATGTGGATGTTGATATTACTCACAAGCCAGAGCACAAGCCAAAGAGTACATAA

Protein Analysis

403

Amino Acids

45.38

Weight (kDa)

6.18

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 118 - 308 1.4e-32 Cation efflux transmembrane domain
ZT_dimer PF16916 321 - 389 6.6e-09 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 875, 1053
AciI CCGC 4 cut(s) 106, 616, 727, 810
AclWI GGATC 4 cut(s) 408, 686, 839, 848
AcsI RAATTY 2 cut(s) 12, 597
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 950, 1207
AgsI TTSAA 5 cut(s) 253, 435, 608, 736, 1145
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 8 cut(s) 130, 137, 365, 431, 488, 519, 1123, 1151
AluI AGCT 8 cut(s) 130, 137, 365, 431, 488, 519, 1123, 1151
Alw21I GWGCWC 1 cut(s) 1194
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 4 cut(s) 408, 686, 839, 848
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 362, 544
ApoI RAATTY 2 cut(s) 12, 597
Asp700I GAANNNNTTC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 58, 649
AsuC2I CCSGG 2 cut(s) 653, 1068
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 58, 649
AxyI CCTNAGG 1 cut(s) 1137
Bbv12I GWGCWC 1 cut(s) 1194
BbvI GCAGC 2 cut(s) 374, 556
BccI CCATC 3 cut(s) 113, 866, 898
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 2 cut(s) 653, 1068
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 2 cut(s) 383, 452
BglI GCCNNNNNGGC 1 cut(s) 103
BisI GCNGC 5 cut(s) 107, 363, 545, 617, 727
BlsI GCNGC 5 cut(s) 108, 364, 546, 618, 728
BmcAI AGTACT 1 cut(s) 950
Bme1390I CCNGG 3 cut(s) 291, 653, 1068
Bme18I GGWCC 2 cut(s) 58, 649
BmeRI GACNNNNNGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 58, 649
BmiI GGNNCC 3 cut(s) 651, 856, 980
BmrFI CCNGG 3 cut(s) 291, 653, 1068
BmsI GCATC 5 cut(s) 362, 531, 544, 578, 815
BplI GAGNNNNNCTC 2 cut(s) 1095, 1127
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 2 cut(s) 747, 1145
BpuMI CCSGG 2 cut(s) 653, 1068
Bsa29I ATCGAT 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 677
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 417, 549
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 899, 929
Bse118I RCCGGY 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 1137
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 677
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 417, 549
BseGI GGATG 7 cut(s) 124, 313, 471, 546, 675, 806, 1171
BseJI GATNNNNATC 1 cut(s) 677
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 129, 1128
BseXI GCAGC 2 cut(s) 374, 556
BshFI GGCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 1194
BsiSI CCGG 5 cut(s) 37, 56, 98, 653, 1068
BslFI GGGAC 1 cut(s) 1063
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 1 cut(s) 1063
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 1194
Bsp143I GATC 6 cut(s) 413, 678, 766, 840, 844, 993
BspACI CCGC 4 cut(s) 106, 616, 727, 810
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 130, 1129
BspDI ATCGAT 1 cut(s) 843
BspLI GGNNCC 3 cut(s) 651, 856, 980
BspPI GGATC 4 cut(s) 408, 686, 839, 848
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 417, 549
BssMI GATC 6 cut(s) 413, 678, 766, 840, 844, 993
BssNAI GTATAC 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 697, 901, 1012
BstAPI GCANNNNNTGC 3 cut(s) 350, 359, 541
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 99, 533
BstDEI CTNAG 4 cut(s) 138, 952, 1082, 1137
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 7 cut(s) 124, 313, 471, 546, 675, 806, 1171
BstKTI GATC 6 cut(s) 416, 681, 769, 843, 847, 996
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 6 cut(s) 413, 678, 766, 840, 844, 993
BstMWI GCNNNNNNNGC 7 cut(s) 103, 350, 359, 428, 541, 818, 997
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 289, 651, 1066
BstV1I GCAGC 2 cut(s) 374, 556
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BstZ17I GTATAC 1 cut(s) 876
Bsu15I ATCGAT 1 cut(s) 843
Bsu36I CCTNAGG 1 cut(s) 1137
BsuRI GGCC 1 cut(s) 289
BsuTUI ATCGAT 1 cut(s) 843
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 7 cut(s) 124, 313, 471, 546, 675, 806, 1171
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 897, 1017
Cac8I GCNNGC 2 cut(s) 99, 533
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 58, 649
ClaI ATCGAT 1 cut(s) 843
Csp6I GTAC 2 cut(s) 949, 1206
CviAII CATG 5 cut(s) 102, 491, 682, 983, 1160
CviQI GTAC 2 cut(s) 949, 1206
DdeI CTNAG 4 cut(s) 138, 952, 1082, 1137
DpnI GATC 6 cut(s) 415, 680, 768, 842, 846, 995
DpnII GATC 6 cut(s) 413, 678, 766, 840, 844, 993
DriI GACNNNNNGTC 1 cut(s) 460
Eam1105I GACNNNNNGTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 58, 649
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 1137
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 105, 494, 685, 986, 1163
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FaqI GGGAC 1 cut(s) 1063
FatI CATG 5 cut(s) 101, 490, 681, 982, 1159
FauNDI CATATG 1 cut(s) 757
FblI GTMKAC 2 cut(s) 875, 1053
Fnu4HI GCNGC 5 cut(s) 107, 363, 545, 617, 727
FokI GGATG 7 cut(s) 131, 320, 458, 553, 682, 793, 1178
Fsp4HI GCNGC 5 cut(s) 107, 363, 545, 617, 727
FspBI CTAG 2 cut(s) 383, 452
GluI GCNGC 5 cut(s) 107, 363, 545, 617, 727
HaeIII GGCC 1 cut(s) 289
HapII CCGG 5 cut(s) 37, 56, 98, 653, 1068
Hin1II CATG 5 cut(s) 105, 494, 685, 986, 1163
HincII GTYRAC 2 cut(s) 963, 1054
HindII GTYRAC 2 cut(s) 963, 1054
HindIII AAGCTT 2 cut(s) 128, 1121
HpaII CCGG 5 cut(s) 37, 56, 98, 653, 1068
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 483, 876, 963, 1054
Hpy188I TCNGA 2 cut(s) 274, 540
Hpy188III TCNNGA 2 cut(s) 764, 1136
Hpy8I GTNNAC 4 cut(s) 483, 876, 963, 1054
HpyCH4III ACNGT 3 cut(s) 697, 901, 1012
HpyCH4V TGCA 8 cut(s) 212, 326, 353, 362, 494, 544, 569, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 103, 350, 359, 428, 541, 818, 997
HpyF3I CTNAG 4 cut(s) 138, 952, 1082, 1137
Hsp92II CATG 5 cut(s) 105, 494, 685, 986, 1163
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 6 cut(s) 413, 678, 766, 840, 844, 993
LmnI GCTCC 1 cut(s) 854
Lsp1109I GCAGC 2 cut(s) 374, 556
LweI GCATC 5 cut(s) 362, 531, 544, 578, 815
MaeI CTAG 2 cut(s) 383, 452
MaeIII GTNAC 3 cut(s) 4, 76, 918
MalI GATC 6 cut(s) 415, 680, 768, 842, 846, 995
MboI GATC 6 cut(s) 413, 678, 766, 840, 844, 993
MboII GAAGA 2 cut(s) 325, 1124
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 1194
MlyI GAGTC 4 cut(s) 132, 194, 257, 628
MmeI TCCRAC 1 cut(s) 832
MnlI CCTC 8 cut(s) 189, 219, 298, 458, 467, 1042, 1099, 1132
Mph1103I ATGCAT 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 3 cut(s) 191, 299, 1035
MslI CAYNNNNRTG 3 cut(s) 713, 902, 1164
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 5 cut(s) 37, 56, 98, 653, 1068
MspR9I CCNGG 3 cut(s) 291, 653, 1068
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 7 cut(s) 103, 350, 359, 428, 541, 818, 997
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 2 cut(s) 653, 1068
NdeI CATATG 1 cut(s) 757
NdeII GATC 6 cut(s) 413, 678, 766, 840, 844, 993
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 5 cut(s) 105, 494, 685, 986, 1163
NlaIV GGNNCC 3 cut(s) 651, 856, 980
NmuCI GTSAC 3 cut(s) 4, 76, 918
NsiI ATGCAT 1 cut(s) 355
NspV TTCGAA 1 cut(s) 16
PctI GAATGC 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 7 cut(s) 23, 92, 249, 443, 608, 732, 1129
PflFI GACNNNGTC 1 cut(s) 1058
PkrI GCNGC 5 cut(s) 108, 364, 546, 618, 728
PleI GAGTC 4 cut(s) 131, 193, 257, 628
PpsI GAGTC 4 cut(s) 131, 193, 257, 628
PpuMI RGGWCCY 1 cut(s) 649
Psp5II RGGWCCY 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 651, 856, 980
PspPI GGNCC 2 cut(s) 58, 649
PspPPI RGGWCCY 1 cut(s) 649
PsuI RGATCY 1 cut(s) 413
PsyI GACNNNGTC 1 cut(s) 1058
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 950, 1207
RsaNI GTAC 2 cut(s) 949, 1206
RseI CAYNNNNRTG 3 cut(s) 713, 902, 1164
SalI GTCGAC 1 cut(s) 1052
SaqAI TTAA 3 cut(s) 191, 299, 1035
SatI GCNGC 5 cut(s) 107, 363, 545, 617, 727
Sau3AI GATC 6 cut(s) 413, 678, 766, 840, 844, 993
Sau96I GGNCC 2 cut(s) 58, 649
ScaI AGTACT 1 cut(s) 950
SchI GAGTC 4 cut(s) 132, 194, 257, 628
ScrFI CCNGG 3 cut(s) 291, 653, 1068
SduI GDGCHC 1 cut(s) 1194
SfaNI GCATC 5 cut(s) 362, 531, 544, 578, 815
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 2 cut(s) 58, 649
SmiMI CAYNNNNRTG 3 cut(s) 713, 902, 1164
SmlI CTYRAG 2 cut(s) 762, 1124
SmoI CTYRAG 2 cut(s) 762, 1124
SsiI CCGC 4 cut(s) 106, 616, 727, 810
SspI AATATT 2 cut(s) 218, 1099
SspMI CTAG 2 cut(s) 383, 452
StyD4I CCNGG 3 cut(s) 289, 651, 1066
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 697, 901, 1012
TaqI TCGA 4 cut(s) 16, 356, 843, 1053
TatI WGTACW 2 cut(s) 948, 1205
TauI GCSGC 3 cut(s) 109, 619, 729
TfiI GAWTC 7 cut(s) 23, 92, 249, 443, 608, 732, 1129
Tru1I TTAA 3 cut(s) 191, 299, 1035
Tru9I TTAA 3 cut(s) 191, 299, 1035
TscAI CASTG 3 cut(s) 87, 904, 1017
TseFI GTSAC 3 cut(s) 4, 76, 918
TseI GCWGC 2 cut(s) 362, 544
Tsp45I GTSAC 3 cut(s) 4, 76, 918
TspDTI ATGAA 4 cut(s) 270, 460, 697, 1148
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 87, 904, 1017
Tth111I GACNNNGTC 1 cut(s) 1058
VpaK11BI GGWCC 2 cut(s) 58, 649
XapI RAATTY 2 cut(s) 12, 597
XmiI GTMKAC 2 cut(s) 875, 1053
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 2 cut(s) 383, 452
ZrmI AGTACT 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.