Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

26449173 .. 26453320

Gene Structure 4148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0246000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGAGATTCACAAGGGAATGGTAAAAGAAAGGATTACAAAACTTGGAACACTGAAGAAAGCAACGTTTTGCTTCAACTTATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGTAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGAAAATGAATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATAGAAATACTAACATTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGGCTCAAAAGGGGCTACTGGTCAGGCTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTTTTGGATGCTATGAAGGAGACTCCAGGATTAACTGATGAAGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAGCGACTTAATTGGATCACCTATAAACAAATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

301

Amino Acids

33.83

Weight (kDa)

5.64

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	15 - 112	3.6e-17	Myb/SANT-like DNA-binding domain
At2g29880_C	PF24769	254 - 298	4.2e-21	At2g29880 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	482
AciI	CCGC	1 cut(s)	482
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	3 cut(s)	281, 294, 890
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	5 cut(s)	77, 89, 340, 400, 853
AjnI	CCWGG	1 cut(s)	778
AluBI	AGCT	4 cut(s)	154, 256, 569, 797
AluI	AGCT	4 cut(s)	154, 256, 569, 797
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	3 cut(s)	281, 294, 890
ApoI	RAATTY	1 cut(s)	711
AseI	ATTAAT	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	2 cut(s)	95, 264
AsuHPI	GGTGA	2 cut(s)	464, 877
BaeGI	GKGCMC	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	654
BccI	CCATC	2 cut(s)	299, 518
BciT130I	CCWGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	2 cut(s)	449, 662
BfoI	RGCGCY	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	780
BmiI	GGNNCC	2 cut(s)	94, 288
BmrFI	CCNGG	1 cut(s)	780
BmsI	GCATC	3 cut(s)	454, 550, 751
BpmI	CTGGAG	2 cut(s)	549, 762
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	433, 649
BseBI	CCWGG	1 cut(s)	780
BseGI	GGATG	2 cut(s)	346, 766
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	266, 645
BseNI	ACTGG	2 cut(s)	433, 649
BseSI	GKGCMC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	767
Bsp1286I	GDGCHC	2 cut(s)	363, 440
Bsp143I	GATC	2 cut(s)	286, 882
BspACI	CCGC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	265, 646
BspLI	GGNNCC	2 cut(s)	94, 288
BspPI	GGATC	3 cut(s)	281, 294, 890
BspT107I	GGYRCC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	433, 649
BssMI	GATC	2 cut(s)	286, 882
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	2 cut(s)	252, 654
BstF5I	GGATG	2 cut(s)	346, 766
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 264
BstKTI	GATC	2 cut(s)	289, 885
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	2 cut(s)	286, 882
BstNI	CCWGG	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	778
BstSLI	GKGCMC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	346, 766
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	51, 306
Cac8I	GCNNGC	1 cut(s)	799
CfoI	GCGC	2 cut(s)	95, 264
CviAII	CATG	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	252, 654
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	2 cut(s)	288, 884
DpnII	GATC	2 cut(s)	286, 882
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
FaeI	CATG	1 cut(s)	359
FatI	CATG	1 cut(s)	355
FokI	GGATG	2 cut(s)	333, 773
FriOI	GRGCYC	1 cut(s)	440
FspBI	CTAG	2 cut(s)	449, 662
GlaI	GCGC	2 cut(s)	94, 263
GsuI	CTGGAG	2 cut(s)	549, 762
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	2 cut(s)	95, 264
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	2 cut(s)	93, 262
HinP1I	GCGC	2 cut(s)	93, 262
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	7 cut(s)	8, 303, 500, 586, 737, 775, 859
HphI	GGTGA	2 cut(s)	464, 877
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	8 cut(s)	110, 273, 383, 662, 741, 812, 850, 863
HpyAV	CCTTC	2 cut(s)	83, 763
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	407, 425, 467, 901
HpyF3I	CTNAG	2 cut(s)	252, 654
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	2 cut(s)	93, 262
KasI	GGCGCC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	286, 882
LmnI	GCTCC	3 cut(s)	479, 568, 574
LweI	GCATC	3 cut(s)	454, 550, 751
MaeI	CTAG	2 cut(s)	449, 662
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	342, 694, 749
MalI	GATC	2 cut(s)	288, 884
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	2 cut(s)	286, 882
MboII	GAAGA	4 cut(s)	68, 742, 838, 865
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	363, 440
MluCI	AATT	6 cut(s)	244, 402, 510, 690, 711, 877
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	580, 769, 853
MmeI	TCCRAC	2 cut(s)	374, 391
MnlI	CCTC	4 cut(s)	139, 385, 478, 649
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	7 cut(s)	117, 168, 228, 722, 785, 822, 876
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	780
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	2 cut(s)	286, 882
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	94, 288
NmuCI	GTSAC	3 cut(s)	342, 694, 749
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	8, 303, 500, 737
PflMI	CCANNNNNTGG	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	778
PleI	GAGTC	3 cut(s)	580, 769, 853
PluTI	GGCGCC	1 cut(s)	96
PpsI	GAGTC	3 cut(s)	580, 769, 853
PshBI	ATTAAT	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	2 cut(s)	94, 288
PsuI	RGATCY	1 cut(s)	286
SaqAI	TTAA	7 cut(s)	117, 168, 228, 722, 785, 822, 876
Sau3AI	GATC	2 cut(s)	286, 882
SchI	GAGTC	3 cut(s)	580, 769, 853
ScrFI	CCNGG	1 cut(s)	780
SduI	GDGCHC	2 cut(s)	363, 440
SetI	ASST	9 cut(s)	69, 156, 258, 454, 571, 660, 756, 799, 890
SfaNI	GCATC	3 cut(s)	454, 550, 751
SfoI	GGCGCC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	167, 588
SmoI	CTYRAG	2 cut(s)	167, 588
Sse9I	AATT	6 cut(s)	244, 402, 510, 690, 711, 877
SsiI	CCGC	1 cut(s)	482
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	449, 662
StyD4I	CCNGG	1 cut(s)	778
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	6 cut(s)	244, 402, 510, 690, 711, 877
TfiI	GAWTC	4 cut(s)	8, 303, 500, 737
Tru1I	TTAA	7 cut(s)	117, 168, 228, 722, 785, 822, 876
Tru9I	TTAA	7 cut(s)	117, 168, 228, 722, 785, 822, 876
TscAI	CASTG	2 cut(s)	58, 313
TseFI	GTSAC	3 cut(s)	342, 694, 749
Tsp45I	GTSAC	3 cut(s)	342, 694, 749
TspDTI	ATGAA	7 cut(s)	201, 333, 507, 513, 630, 782, 807
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	58, 313
Van91I	CCANNNNNTGG	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	1 cut(s)	711
XbaI	TCTAGA	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	449, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.