Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Reverse (-)

71030682 .. 71032405

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG410900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACACTTGAGCTAGTCTTCCTCATTCTCTTCCTTGTTTTGGCCATCTCCATAATCTCGAGAATGTTGTACCATGATCACCTTCCTCCAAGCCCCTTAGCCTTGCCCATCATCGGCCACTTGCACCTCCTTAGCCCTGTCACCCACCGCTCCCTCCACAACCTCGCATTACGGTTTGGTCCCTTATTCTCTCTTCGTCTCGGCTCTGTCCCATGCATCGTTGTAACCTCAGCGGAGCTTGCAAAAGAGTTCCTCAAAACAAACGAGAACGCCTTCATAAACCGGCCTCAGTCAATTGCAATCAATCGTATCACATACAACGCTTCGTTTGTTTTTGCACCCTATGGACCGTACTGGAAGTTCATCAGGAAGCTGAGCATGAACGAGCTCCTAAGCAGTCGTAGCGTAGACAAGTTTCTTTCTATTCGAAACCAAGAGTGCCTTGGGCTCCTGAGGTTGTTGGCCAAGAAAGCGGAGAATTACGAAGATGTGAATCTCAGTGAGGAGCTACGGAGGCTGGGCCACAATGTGATGGGGAAGATGATGCTGGGGAAACATGCCAGTGATTCTTTCCGGGCAGAGGAGGCGAGGTTGTTGGTGCGGGAAGCCACAGAGATGTTAGGGGAGTTGAATTTGTGTGATTTTAATTGGGTTTGGAAGAAGTTGGATTTGCAAGGATTTGGGAATAAAATCGAGAACACGCATAGGAGGGTTGATAGTTGGTTAGACAAGGTCATTACAGAACGAGAAGAACTGAGGAAGGAACGTAAGAAAACCAATGGAGGAGGTAATGTTGAAGAGGAGGAGGTCAAGGATTTTCTTGACATTTTACTTGATTTGTTGGACGACGAGAGCCGTGAGACTGCGGAGCTTGGATTTTCAAGAGTTCACATTAAGGCACTAATTGCGCAAAAAAATCAATCCGATCAGATTCGTTCTTATGGTAAATCGGAAGGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

320

Amino Acids

36.7

Weight (kDa)

7.77

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	29 - 301	3.3e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	909
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	5 cut(s)	148, 233, 473, 601, 866
AcoI	YGGCCR	3 cut(s)	42, 115, 462
AcsI	RAATTY	1 cut(s)	631
AdeI	CACNNNGTG	1 cut(s)	529
AfaI	GTAC	2 cut(s)	71, 353
AfiI	CCNNNNNNNGG	3 cut(s)	40, 113, 580
AgsI	TTSAA	3 cut(s)	631, 797, 882
AluBI	AGCT	6 cut(s)	13, 238, 373, 388, 508, 871
AluI	AGCT	6 cut(s)	13, 238, 373, 388, 508, 871
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	203, 854
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	5 cut(s)	42, 115, 284, 462, 520
ApoI	RAATTY	1 cut(s)	631
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	3 cut(s)	179, 347, 520
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	71, 133
AsuII	TTCGAA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	179, 347
AxyI	CCTNAGG	1 cut(s)	452
BalI	TGGCCA	2 cut(s)	44, 464
BanII	GRGCYC	2 cut(s)	390, 450
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	229
BccI	CCATC	3 cut(s)	53, 116, 526
BceAI	ACGGC	1 cut(s)	840
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	203, 854
BfaI	CTAG	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	179, 347
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	179, 347, 520
BmiI	GGNNCC	2 cut(s)	181, 449
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	225, 534
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	4 cut(s)	97, 131, 229, 392
Bpu1102I	GCTNAGC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	442
BsaXI	ACNNNNNCTCC	4 cut(s)	575, 605, 777, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 113, 580
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	359, 561
Bse21I	CCTNAGG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	40, 113, 580
BseMII	CTCAG	6 cut(s)	243, 302, 365, 443, 511, 746
BseNI	ACTGG	2 cut(s)	359, 561
BseRI	GAGGAG	5 cut(s)	518, 596, 798, 815, 818
BseYI	CCCAGC	2 cut(s)	517, 547
BshFI	GGCC	5 cut(s)	44, 117, 286, 464, 522
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	283, 574
BslFI	GGGAC	2 cut(s)	165, 194
BslI	CCNNNNNNNGG	3 cut(s)	40, 113, 580
BsmAI	GTCTC	2 cut(s)	203, 854
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	165, 194
BsnI	GGCC	5 cut(s)	44, 117, 286, 464, 522
BsoBI	CYCGRG	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	390, 450
Bsp143I	GATC	2 cut(s)	76, 925
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	5 cut(s)	148, 233, 473, 601, 866
BspANI	GGCC	5 cut(s)	44, 117, 286, 464, 522
BspCNI	CTCAG	6 cut(s)	242, 301, 366, 444, 510, 747
BspLI	GGNNCC	2 cut(s)	181, 449
BspT104I	TTCGAA	1 cut(s)	427
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	359, 561
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	76, 925
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	174, 351
Bst6I	CTCTTC	3 cut(s)	35, 198, 792
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	9 cut(s)	97, 131, 229, 288, 374, 392, 452, 497, 755
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	2 cut(s)	79, 928
BstMAI	GTCTC	2 cut(s)	203, 854
BstMBI	GATC	2 cut(s)	76, 925
BstMWI	GCNNNNNNNGC	6 cut(s)	239, 402, 470, 514, 584, 905
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	452
BsuRI	GGCC	5 cut(s)	44, 117, 286, 464, 522
BtsIMutI	CAGTG	2 cut(s)	505, 568
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	910
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	3 cut(s)	179, 347, 520
Csp6I	GTAC	2 cut(s)	70, 352
CviAII	CATG	4 cut(s)	74, 213, 379, 557
CviQI	GTAC	2 cut(s)	70, 352
DdeI	CTNAG	9 cut(s)	97, 131, 229, 288, 374, 392, 452, 497, 755
DpnI	GATC	2 cut(s)	78, 927
DpnII	GATC	2 cut(s)	76, 925
DraIII	CACNNNGTG	1 cut(s)	529
EaeI	YGGCCR	3 cut(s)	42, 115, 462
Eam1104I	CTCTTC	3 cut(s)	35, 198, 792
EarI	CTCTTC	3 cut(s)	35, 198, 792
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	390, 450
Eco47I	GGWCC	2 cut(s)	179, 347
Eco53kI	GAGCTC	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	2 cut(s)	390, 450
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	77, 216, 382, 560
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	2 cut(s)	165, 194
FatI	CATG	4 cut(s)	73, 212, 378, 556
FauI	CCCGC	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	408
FriOI	GRGCYC	2 cut(s)	390, 450
FspBI	CTAG	1 cut(s)	14
FspI	TGCGCA	1 cut(s)	909
GlaI	GCGC	1 cut(s)	909
GsaI	CCCAGC	2 cut(s)	521, 551
HaeIII	GGCC	5 cut(s)	44, 117, 286, 464, 522
HapII	CCGG	2 cut(s)	283, 574
HhaI	GCGC	1 cut(s)	910
Hin1II	CATG	4 cut(s)	77, 216, 382, 560
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HinfI	GANTC	3 cut(s)	493, 566, 931
HpaII	CCGG	2 cut(s)	283, 574
HphI	GGTGA	2 cut(s)	71, 133
Hpy166II	GTNNAC	2 cut(s)	409, 889
Hpy188I	TCNGA	3 cut(s)	925, 930, 952
Hpy188III	TCNNGA	7 cut(s)	58, 60, 367, 451, 694, 821, 882
Hpy8I	GTNNAC	2 cut(s)	409, 889
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	4 cut(s)	92, 283, 754, 947
HpyCH4III	ACNGT	2 cut(s)	174, 351
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	6 cut(s)	124, 216, 242, 299, 338, 673
HpyF10VI	GCNNNNNNNGC	6 cut(s)	239, 402, 470, 514, 584, 905
HpyF3I	CTNAG	9 cut(s)	97, 131, 229, 288, 374, 392, 452, 497, 755
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	4 cut(s)	77, 216, 382, 560
HspAI	GCGC	1 cut(s)	908
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 925
LmnI	GCTCC	6 cut(s)	155, 235, 393, 453, 505, 868
LpnPI	CCDG	9 cut(s)	150, 296, 340, 352, 464, 503, 533, 574, 587
LweI	GCATC	2 cut(s)	225, 534
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	139, 223
MalI	GATC	2 cut(s)	78, 927
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	76, 925
MboII	GAAGA	8 cut(s)	10, 22, 185, 497, 550, 670, 761, 809
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	390, 450
MlsI	TGGCCA	2 cut(s)	44, 464
MluCI	AATT	5 cut(s)	294, 478, 631, 646, 903
MluNI	TGGCCA	2 cut(s)	44, 464
MmeI	TCCRAC	2 cut(s)	645, 822
Mox20I	TGGCCA	2 cut(s)	44, 464
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	2 cut(s)	44, 464
MseI	TTAA	2 cut(s)	645, 894
MslI	CAYNNNNRTG	2 cut(s)	561, 614
Msp20I	TGGCCA	2 cut(s)	44, 464
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	283, 574
MspR9I	CCNGG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	239, 402, 470, 514, 584, 905
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	2 cut(s)	76, 925
NlaIII	CATG	4 cut(s)	77, 216, 382, 560
NlaIV	GGNNCC	2 cut(s)	181, 449
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	139
NsbI	TGCGCA	1 cut(s)	909
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	493, 566, 931
PflFI	GACNNNGTC	1 cut(s)	731
Psp124BI	GAGCTC	1 cut(s)	390
PspFI	CCCAGC	2 cut(s)	517, 547
PspN4I	GGNNCC	2 cut(s)	181, 449
PspPI	GGNCC	3 cut(s)	179, 347, 520
PsrI	GAACNNNNNNTAC	2 cut(s)	344, 376
PsyI	GACNNNGTC	1 cut(s)	731
RsaI	GTAC	2 cut(s)	71, 353
RsaNI	GTAC	2 cut(s)	70, 352
RseI	CAYNNNNRTG	2 cut(s)	561, 614
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	645, 894
Sau3AI	GATC	2 cut(s)	76, 925
Sau96I	GGNCC	3 cut(s)	179, 347, 520
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	2 cut(s)	390, 450
SfaNI	GCATC	2 cut(s)	225, 534
Sfr274I	CTCGAG	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	2 cut(s)	179, 347
SlaI	CTCGAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	561, 614
SmlI	CTYRAG	2 cut(s)	8, 58
SmoI	CTYRAG	2 cut(s)	8, 58
Sse9I	AATT	5 cut(s)	294, 478, 631, 646, 903
SsiI	CCGC	5 cut(s)	148, 233, 473, 601, 866
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	174, 351
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	3 cut(s)	59, 427, 693
TasI	AATT	5 cut(s)	294, 478, 631, 646, 903
TfiI	GAWTC	3 cut(s)	493, 566, 931
Tru1I	TTAA	2 cut(s)	645, 894
Tru9I	TTAA	2 cut(s)	645, 894
TscAI	CASTG	2 cut(s)	505, 568
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	265, 352, 395
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	2 cut(s)	505, 568
Tth111I	GACNNNGTC	1 cut(s)	731
VpaK11BI	GGWCC	2 cut(s)	179, 347
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.