Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Reverse (-)

10408784 .. 10409818

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCAAGAAACTGGATTTAATTTGCAGGGATTTGGAAAGAAAATCGAGGACACGCAGGTCAAGTTTGATGAATTGGTGGAGAAGGTTGTTAATGAACATGAACAACTGAGAATTAAGAACAACAACATTAAGGGAGGAGAGGAGGATGAGAAGGAGGTCAAGGATTTTCCAAGCATCTTGCTTGATATGTTGGAATATGAGAGTAGTGAGAGCGTGGAGGTTGGATTTTCAAGAGTTCACATTAAGGCTGTAATTATGGTAATAATTAACATAATGATACTAGCTAGGGTTCTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

99

Amino Acids

11.38

Weight (kDa)

4.8

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	231
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
BfaI	CTAG	2 cut(s)	281, 285
BfuAI	ACCTGC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	150, 155
BspCNI	CTCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	46
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	2 cut(s)	248, 284
CviKI_1	RGCY	2 cut(s)	248, 284
DdeI	CTNAG	1 cut(s)	107
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	99, 188, 198, 257, 272, 298
FatI	CATG	1 cut(s)	97
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	2 cut(s)	281, 285
Hin1II	CATG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	76, 145
HpyCH4V	TGCA	2 cut(s)	4, 25
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	101
LpnPI	CCDG	2 cut(s)	11, 41
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	281, 285
MluCI	AATT	5 cut(s)	19, 71, 111, 252, 264
MmeI	TCCRAC	2 cut(s)	171, 202
MnlI	CCTC	6 cut(s)	40, 128, 133, 136, 148, 211
MseI	TTAA	6 cut(s)	18, 90, 114, 129, 243, 267
NlaIII	CATG	1 cut(s)	101
SaqAI	TTAA	6 cut(s)	18, 90, 114, 129, 243, 267
SetI	ASST	5 cut(s)	60, 87, 159, 222, 286
SfaNI	GCATC	1 cut(s)	183
Sse9I	AATT	5 cut(s)	19, 71, 111, 252, 264
SspMI	CTAG	2 cut(s)	281, 285
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	19, 71, 111, 252, 264
Tru1I	TTAA	6 cut(s)	18, 90, 114, 129, 243, 267
Tru9I	TTAA	6 cut(s)	18, 90, 114, 129, 243, 267
TspDTI	ATGAA	3 cut(s)	84, 108, 114
XspI	CTAG	2 cut(s)	281, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.