Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

10411194 .. 10412901

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1115300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGATGTTGGGGAATTCTAAGGGGTCTAGTGCTGAAGGCAGAGACGAGGAGGCTAGGCTTGTGGTGAGAGAGGGATTTGGGAAGAGAATTGAAGACATTCGTAGGAGATTCGACGCGTTGGTGGAGAAGGTTATTTCAGAACGTGAACAACTGAGAAAGAAAAACATGAAAAATGGAGGAGGTAGTGGTGGCGAGGAGGTGAAGGATTTTCTTGACATTTTGCTTGATATACTGGAAAAAGGGAGTGCTGAGAGTGAGGAGGTGGAATCTAAAAGAGTGCACATCAAGGTTTTAATCATTGAATTCTTCACGGCAGGTACAGATACAACCGCCATTTCAATGGAGTGGGCACTAGCAGATCTCATCAACCACCCGAAGGAGCTGGAGAAAGCAAGGGAGGAGATTGATCGAGTCGCTGGGAAAAGACGGCTAGTCGTAGAATCAGACGGTCCAAACCTTCCATACATACAAGCCATTATAAAAGAAACACTGAGACTGCACCCCTCTGTCCCTATGATCCCAAGAAAGAGTGTACAAAAGTGTAACATTGGGAACTATGTGATACCGGAAAACACAATGCTATTTGTGAATGCTTGGGCCATCGGAAGGGACCCAAAGTATTGGGAAAATCCTTTGCACTTTTACCCTGAAAGATTCTTAGCACCACTCAGTGGTGGAGGAGATGGAGCGCGTGCATTAGATCTTAGGGGGCAACATTTTCAGCTGCTTCCGTTTGGGACTGGGAGGAGGATATGCCCTGGTATAAACCTAGCCCTGCAAATGCTGCCAGCTCTACTTGGTGCAATGGTTCAATGCTTTGATTGGAAAGTTGTTGGGGTAAATCAGAAGCATATGAACGGTGATGATCGTGTTCTGGAAATGGATGAACGGCCAGGAATGGCAACTCCACGAGCCCATGATTTGATTTGTATTCCAGTGGTACGTTTTGAAGACTTTGATCCAAATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

325

Amino Acids

36.49

Weight (kDa)

5.91

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	26 - 286	2.1e-67	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccII	CGCG	2 cut(s)	116, 691
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	2 cut(s)	511, 953
AcoI	YGGCCR	1 cut(s)	890
AcsI	RAATTY	2 cut(s)	13, 302
AcuI	CTGAAG	1 cut(s)	54
AdeI	CACNNNGTG	1 cut(s)	671
AfaI	GTAC	3 cut(s)	319, 534, 942
AfiI	CCNNNNNNNGG	3 cut(s)	376, 606, 671
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	5 cut(s)	92, 302, 339, 812, 950
AhdI	GACNNNNNGTC	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	757, 892
AluBI	AGCT	3 cut(s)	382, 724, 791
AluI	AGCT	3 cut(s)	382, 724, 791
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	36, 487
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	511, 953
AoxI	GGCC	2 cut(s)	597, 890
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	724, 784
ApoI	RAATTY	2 cut(s)	13, 302
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	3 cut(s)	449, 597, 610
AsuHPI	GGTGA	3 cut(s)	76, 211, 872
AvaII	GGWCC	2 cut(s)	449, 610
BaeGI	GKGCMC	2 cut(s)	282, 352
BanII	GRGCYC	1 cut(s)	916
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	2 cut(s)	99, 957
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	711, 771
BccI	CCATC	2 cut(s)	608, 677
BceAI	ACGGC	3 cut(s)	327, 443, 905
BciT130I	CCWGG	2 cut(s)	759, 894
BcoDI	GTCTC	2 cut(s)	36, 487
BfaI	CTAG	5 cut(s)	27, 54, 353, 431, 770
BfuAI	ACCTGC	1 cut(s)	305
BglII	AGATCT	2 cut(s)	358, 700
BisI	GCNGC	2 cut(s)	725, 785
BlsI	GCNGC	2 cut(s)	726, 786
Bme1390I	CCNGG	2 cut(s)	759, 894
Bme18I	GGWCC	2 cut(s)	449, 610
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	449, 597, 610
BmiI	GGNNCC	2 cut(s)	611, 612
BmrFI	CCNGG	2 cut(s)	759, 894
BmrI	ACTGGG	1 cut(s)	750
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	2 cut(s)	99, 957
BpmI	CTGGAG	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	757
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 606, 671
Bse1I	ACTGG	3 cut(s)	237, 745, 935
Bse3DI	GCAATG	1 cut(s)	810
BseBI	CCWGG	2 cut(s)	759, 894
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	1 cut(s)	889
BseLI	CCNNNNNNNGG	3 cut(s)	376, 606, 671
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	4 cut(s)	143, 240, 482, 682
BseNI	ACTGG	3 cut(s)	237, 745, 935
BseRI	GAGGAG	7 cut(s)	62, 192, 209, 272, 413, 693, 760
BseSI	GKGCMC	2 cut(s)	282, 352
BseXI	GCAGC	2 cut(s)	711, 771
BseYI	CCCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	2 cut(s)	116, 691
BshFI	GGCC	2 cut(s)	599, 892
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	3 cut(s)	494, 623, 751
BslI	CCNNNNNNNGG	3 cut(s)	376, 606, 671
BsmAI	GTCTC	2 cut(s)	36, 487
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	3 cut(s)	494, 623, 751
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	599, 892
Bsp1286I	GDGCHC	3 cut(s)	282, 352, 916
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	2 cut(s)	599, 892
BspCNI	CTCAG	4 cut(s)	144, 241, 483, 681
BspFNI	CGCG	2 cut(s)	116, 691
BspLI	GGNNCC	2 cut(s)	611, 612
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	511, 953
BsrDI	GCAATG	1 cut(s)	810
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	237, 745, 935
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
BssSI	CACGAG	1 cut(s)	909
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	759, 894
Bst4CI	ACNGT	2 cut(s)	449, 860
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	784
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	693, 789
BstDEI	CTNAG	7 cut(s)	18, 152, 249, 491, 658, 668, 704
BstF5I	GGATG	1 cut(s)	889
BstFNI	CGCG	2 cut(s)	116, 691
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	6 cut(s)	361, 409, 519, 703, 868, 961
BstMAI	GTCTC	2 cut(s)	36, 487
BstMBI	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	784
BstNI	CCWGG	2 cut(s)	759, 894
BstSCI	CCNGG	2 cut(s)	757, 892
BstSLI	GKGCMC	2 cut(s)	282, 352
BstUI	CGCG	2 cut(s)	116, 691
BstV1I	GCAGC	2 cut(s)	711, 771
BstV2I	GAAGAC	2 cut(s)	99, 957
BstX2I	RGATCY	2 cut(s)	358, 700
BstXI	CCANNNNNNTGG	2 cut(s)	340, 621
BstYI	RGATCY	2 cut(s)	358, 700
BsuRI	GGCC	2 cut(s)	599, 892
BtsCI	GGATG	1 cut(s)	889
BtsIMutI	CAGTG	3 cut(s)	488, 676, 942
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	693, 789
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	449, 597, 610
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	318, 533, 941
CviAII	CATG	2 cut(s)	166, 917
CviQI	GTAC	3 cut(s)	318, 533, 941
DdeI	CTNAG	7 cut(s)	18, 152, 249, 491, 658, 668, 704
DpnI	GATC	6 cut(s)	360, 408, 518, 702, 867, 960
DpnII	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
DraIII	CACNNNGTG	1 cut(s)	671
DriI	GACNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	890
Eam1104I	CTCTTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	916
Eco47I	GGWCC	2 cut(s)	449, 610
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRI	GAATTC	2 cut(s)	13, 302
EcoRII	CCWGG	2 cut(s)	757, 892
EcoT38I	GRGCYC	1 cut(s)	916
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	2 cut(s)	169, 920
FaqI	GGGAC	3 cut(s)	494, 623, 751
FatI	CATG	2 cut(s)	165, 916
FauNDI	CATATG	1 cut(s)	852
Fnu4HI	GCNGC	2 cut(s)	725, 785
FokI	GGATG	1 cut(s)	896
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	2 cut(s)	725, 785
FspBI	CTAG	5 cut(s)	27, 54, 353, 431, 770
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	2 cut(s)	725, 785
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	599, 892
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	2 cut(s)	169, 920
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HinfI	GANTC	5 cut(s)	108, 266, 411, 440, 654
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	3 cut(s)	76, 211, 872
Hpy166II	GTNNAC	3 cut(s)	146, 280, 533
Hpy188I	TCNGA	4 cut(s)	139, 445, 605, 846
Hpy188III	TCNNGA	2 cut(s)	212, 875
Hpy8I	GTNNAC	3 cut(s)	146, 280, 533
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	6 cut(s)	29, 121, 196, 370, 467, 600
HpyCH4III	ACNGT	2 cut(s)	449, 860
HpyCH4IV	ACGT	2 cut(s)	142, 943
HpyCH4V	TGCA	6 cut(s)	280, 499, 637, 695, 778, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	784
HpyF3I	CTNAG	7 cut(s)	18, 152, 249, 491, 658, 668, 704
HpySE526I	ACGT	2 cut(s)	142, 943
Hsp92II	CATG	2 cut(s)	169, 920
HspAI	GCGC	1 cut(s)	689
KflI	GGGWCCC	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
LmnI	GCTCC	2 cut(s)	379, 686
Lsp1109I	GCAGC	2 cut(s)	711, 771
MaeI	CTAG	5 cut(s)	27, 54, 353, 431, 770
MaeII	ACGT	2 cut(s)	142, 943
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	6 cut(s)	360, 408, 518, 702, 867, 960
MboI	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
MboII	GAAGA	4 cut(s)	94, 104, 298, 962
MflI	RGATCY	2 cut(s)	358, 700
MhlI	GDGCHC	3 cut(s)	282, 352, 916
MluCI	AATT	3 cut(s)	13, 87, 302
MluI	ACGCGT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	724
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	759, 894
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	2 cut(s)	759, 894
MvnI	CGCG	2 cut(s)	116, 691
MwoI	GCNNNNNNNGC	1 cut(s)	784
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
NlaIII	CATG	2 cut(s)	169, 920
NlaIV	GGNNCC	2 cut(s)	611, 612
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	4 cut(s)	108, 266, 440, 654
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	726, 786
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	757, 892
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	757, 892
PspN4I	GGNNCC	2 cut(s)	611, 612
PspPI	GGNCC	3 cut(s)	449, 597, 610
PspPPI	RGGWCCY	1 cut(s)	610
PsuI	RGATCY	2 cut(s)	358, 700
PvuII	CAGCTG	1 cut(s)	724
RsaI	GTAC	3 cut(s)	319, 534, 942
RsaNI	GTAC	3 cut(s)	318, 533, 941
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	725, 785
Sau3AI	GATC	6 cut(s)	358, 406, 516, 700, 865, 958
Sau96I	GGNCC	3 cut(s)	449, 597, 610
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	759, 894
SduI	GDGCHC	3 cut(s)	282, 352, 916
SinI	GGWCC	2 cut(s)	449, 610
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	13, 87, 302
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	5 cut(s)	27, 54, 353, 431, 770
StyD4I	CCNGG	2 cut(s)	757, 892
TaaI	ACNGT	2 cut(s)	449, 860
TaiI	ACGT	2 cut(s)	145, 946
TaqI	TCGA	2 cut(s)	111, 409
TasI	AATT	3 cut(s)	13, 87, 302
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	4 cut(s)	108, 266, 440, 654
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	3 cut(s)	495, 676, 942
TseI	GCWGC	2 cut(s)	724, 784
TspDTI	ATGAA	3 cut(s)	182, 869, 900
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	3 cut(s)	495, 676, 942
Van91I	CCANNNNNTGG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	449, 610
XapI	RAATTY	2 cut(s)	13, 302
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	5 cut(s)	27, 54, 353, 431, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.