Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

22097815 .. 22099569

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGGCACCGGCCGAGAGAGAGTGTGTGAGTCGAAGAGAGTTAAGAAACGAAGAAAGGCGTCGCGAGAGAGTGAGCCGAGAGGTTAGGGATTTCTTCTCGGCAGGTATAGAGCCGGTCGCCATTTTATTAGAATGGGCATTGGCCGAGATCATCAATCACCCAAAGATGCTCGAGAAAGCAAGGAAAGAGATTGATCGAGTTATTAGAGATGGACAATTAGTGAGAGAATCAGATGTTCCAAGTCTTCCATACCTCCAAGCCATCATAAAAGAAACACTTAGGCTACATCCACCCTTGCCTTTGCTCATGAAAATATGCGGAAAACAGTGTAAGATCAGCAAATATTTCATTCCGGAAAACGCATTCTTATTTGTGAATCTTTGGGCGATTGGAAGGATCCTACGAACTGGGAAAACCCACTGGAATTCTGGCCAGAAAGATTCTTACATCCCGATGGGAAAGACCAAACAAGTACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

160

Amino Acids

18.69

Weight (kDa)

9.85

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 133	4.7e-32	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	2 cut(s)	394, 407
AcoI	YGGCCR	3 cut(s)	12, 144, 433
AcsI	RAATTY	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	477
AlwI	GGATC	2 cut(s)	394, 407
Ama87I	CYCGRG	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	3 cut(s)	12, 144, 433
ApoI	RAATTY	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	3 cut(s)	206, 272, 451
BfuAI	ACCTGC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	9, 401
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	355
Bse118I	RCCGGY	2 cut(s)	10, 115
Bse1I	ACTGG	2 cut(s)	415, 428
BseAI	TCCGGA	1 cut(s)	355
BseGI	GGATG	2 cut(s)	289, 450
BseNI	ACTGG	2 cut(s)	415, 428
BseX3I	CGGCCG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	2 cut(s)	15, 120
BshFI	GGCC	3 cut(s)	14, 146, 435
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	2 cut(s)	15, 120
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	11, 116, 356
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	14, 146, 435
BsoBI	CYCGRG	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	4 cut(s)	150, 196, 336, 399
Bsp68I	TCGCGA	1 cut(s)	66
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	3 cut(s)	14, 146, 435
BspEI	TCCGGA	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	9, 401
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	394, 407
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	2 cut(s)	10, 115
BsrI	ACTGG	2 cut(s)	415, 428
BssAI	RCCGGY	2 cut(s)	10, 115
BssMI	GATC	4 cut(s)	150, 196, 336, 399
BssNI	GRCGYC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	289, 450
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	153, 199, 339, 402
BstMBI	GATC	4 cut(s)	150, 196, 336, 399
BstMCI	CGRYCG	2 cut(s)	15, 120
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	14, 146, 435
BtsCI	GGATG	2 cut(s)	289, 450
BtsIMutI	CAGTG	2 cut(s)	335, 421
BtuMI	TCGCGA	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	309
Cfr10I	RCCGGY	2 cut(s)	10, 115
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	7 cut(s)	14, 78, 115, 146, 263, 286, 435
CviKI_1	RGCY	7 cut(s)	14, 78, 115, 146, 263, 286, 435
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	4 cut(s)	152, 198, 338, 401
DpnII	GATC	4 cut(s)	150, 196, 336, 399
EaeI	YGGCCR	3 cut(s)	12, 144, 433
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	427
FaeI	CATG	1 cut(s)	313
FaiI	YATR	5 cut(s)	110, 253, 269, 311, 319
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	1 cut(s)	309
FokI	GGATG	2 cut(s)	276, 437
HaeIII	GGCC	3 cut(s)	14, 146, 435
HapII	CCGG	3 cut(s)	11, 116, 356
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	313
HinfI	GANTC	4 cut(s)	31, 230, 379, 443
HpaII	CCGG	3 cut(s)	11, 116, 356
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	5 cut(s)	65, 175, 310, 356, 454
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	478
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	313
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	150, 196, 336, 399
LpnPI	CCDG	8 cut(s)	24, 90, 129, 369, 396, 409, 417, 449
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	478
MalI	GATC	4 cut(s)	152, 198, 338, 401
MboI	GATC	4 cut(s)	150, 196, 336, 399
MboII	GAAGA	4 cut(s)	48, 65, 88, 239
MflI	RGATCY	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	2 cut(s)	218, 427
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	2 cut(s)	76, 266
Mox20I	TGGCCA	1 cut(s)	435
MroI	TCCGGA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	2 cut(s)	44, 481
MslI	CAYNNNNRTG	1 cut(s)	455
Msp20I	TGGCCA	1 cut(s)	435
MspI	CCGG	3 cut(s)	11, 116, 356
Mva1269I	GAATGC	1 cut(s)	365
MvnI	CGCG	1 cut(s)	66
NdeII	GATC	4 cut(s)	150, 196, 336, 399
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	9, 401
NmeAIII	GCCGAG	4 cut(s)	40, 80, 104, 172
NruI	TCGCGA	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	230, 379, 443
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	9, 401
PsuI	RGATCY	1 cut(s)	399
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	44, 481
Sau3AI	GATC	4 cut(s)	150, 196, 336, 399
SchI	GAGTC	1 cut(s)	40
SetI	ASST	4 cut(s)	87, 109, 258, 481
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	218, 427
SsiI	CCGC	1 cut(s)	321
SspI	AATATT	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	3 cut(s)	34, 174, 199
TasI	AATT	2 cut(s)	218, 427
TfiI	GAWTC	3 cut(s)	230, 379, 443
Tru1I	TTAA	2 cut(s)	44, 481
Tru9I	TTAA	2 cut(s)	44, 481
TscAI	CASTG	2 cut(s)	335, 428
TspDTI	ATGAA	2 cut(s)	326, 340
TspRI	CASTG	2 cut(s)	335, 428
XapI	RAATTY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.