Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

22077602 .. 22078423

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCACTTGAGCTAGTCCTCCTCATTCTCTTCCTTGTTTTGGCCATCTCCGTAATCTCGAGAATCTTGTACCATGATCACCTTCCTCCAAGCCCATTAGCCTTGCCCATCATCGGCCACTTGCACCTCCTCGGCCCTCTCATCCACCGCTCCCTCCACAACCTCTCATTACGCTTTGGTCCCCTATTCTCTCTTCGCCTCGGCTCTGTCCCATGCATTGTTGTAACCTCACCGGCACTTGCAGAAGAGTTTCTCAAGACGCACGAGCTGACCTTCATGTCCCGGCCAGAGTTAACCGCGATCCAAACCCTGACCTACAACTCTTCGTTTATATTTAAACCCGCTGGACCGTACTGGAAATTCATGAGGAAGCTGAGCATGACCGAGCTCTTTAACAGTCATAGCGCAGACAAGTTCCTCTCGATTCGCGACCAAGAGTGCATGAGGCTCCTTAGGTTGTTGGCCAAGAAAGCCCAGAGTTATGAAGCTGTGGATCTTAGTGAGGAGATACGGAGGCTATGCTTCGGTATAATCGGGCAGATGATTGCGGGGAAAAGTGCCATGACTGTCCCGGCTAGGGAAGCCTGGTTGATGGTAAGGGAGGCAACGGCGATTGCGGGAGAGATGAATTTCTGTGATTTTAATTGGGTTTGGAAGAAGTTGAATTTAGATGGATATAGGAACAAAATGGAAAGGTTGCAAAGGAGGGTTGATGAATGTTTGGAGGCTTTCATTGTGGAGCGTGAAGAATTGAGGAAGAAGCATAGGACAATTGATGCAGGAGGAAGCAGAAGTTGGCCAAAGGGAGGTGGATTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

273

Amino Acids

31.17

Weight (kDa)

9.35

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	29 - 255	1.2e-24	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	2 cut(s)	299, 429
AciI	CCGC	5 cut(s)	148, 297, 342, 548, 617
AclWI	GGATC	2 cut(s)	295, 501
AcoI	YGGCCR	5 cut(s)	42, 115, 284, 462, 797
AcsI	RAATTY	3 cut(s)	359, 628, 664
AfaI	GTAC	2 cut(s)	71, 353
AfiI	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 806
AgsI	TTSAA	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	584
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	5 cut(s)	13, 268, 373, 388, 488
AluI	AGCT	5 cut(s)	13, 268, 373, 388, 488
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	295, 501
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	6 cut(s)	42, 115, 133, 284, 462, 797
ApoI	RAATTY	3 cut(s)	359, 628, 664
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	134, 179, 347
AsuC2I	CCSGG	2 cut(s)	283, 572
AsuHPI	GGTGA	2 cut(s)	71, 222
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	179, 347
AxyI	CCTNAGG	1 cut(s)	452
BalI	TGGCCA	3 cut(s)	44, 464, 799
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	390
BccI	CCATC	4 cut(s)	53, 116, 586, 665
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	1 cut(s)	586
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	283, 572
BfaI	CTAG	2 cut(s)	14, 576
BlpI	GCTNAGC	1 cut(s)	374
Bme1390I	CCNGG	3 cut(s)	283, 572, 586
Bme18I	GGWCC	2 cut(s)	179, 347
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	134, 179, 347
BmiI	GGNNCC	2 cut(s)	181, 449
BmrFI	CCNGG	3 cut(s)	283, 572, 586
BmsI	GCATC	1 cut(s)	766
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	2 cut(s)	29, 239
BpuMI	CCSGG	2 cut(s)	283, 572
BsaJI	CCNNGG	2 cut(s)	130, 199
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 806
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	359
Bse21I	CCTNAGG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	2 cut(s)	130, 199
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 806
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	3 cut(s)	11, 119, 518
Bsh1236I	CGCG	2 cut(s)	299, 429
BshFI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 799
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	233, 283, 572
BslFI	GGGAC	4 cut(s)	165, 194, 265, 554
BslI	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 806
BsmFI	GGGAC	4 cut(s)	165, 194, 265, 554
BsnI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 799
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	76, 300, 493
Bsp1720I	GCTNAGC	1 cut(s)	374
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	5 cut(s)	148, 297, 342, 548, 617
BspANI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 799
BspCNI	CTCAG	1 cut(s)	366
BspFNI	CGCG	2 cut(s)	299, 429
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	181, 449
BspPI	GGATC	2 cut(s)	295, 501
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	130, 199
BssMI	GATC	3 cut(s)	76, 300, 493
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	351, 398, 568
Bst6I	CTCTTC	4 cut(s)	35, 198, 240, 328
BstDEI	CTNAG	3 cut(s)	374, 452, 497
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	2 cut(s)	299, 429
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	3 cut(s)	79, 303, 496
BstMBI	GATC	3 cut(s)	76, 300, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 581
BstNI	CCWGG	1 cut(s)	586
BstSCI	CCNGG	3 cut(s)	281, 570, 584
BstUI	CGCG	2 cut(s)	299, 429
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
Bsu36I	CCTNAGG	1 cut(s)	452
BsuRI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 799
BtsCI	GGATG	1 cut(s)	141
BtuMI	TCGCGA	1 cut(s)	429
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	134, 179, 347
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	70, 352
CviAII	CATG	7 cut(s)	74, 213, 277, 364, 379, 442, 562
CviQI	GTAC	2 cut(s)	70, 352
DdeI	CTNAG	3 cut(s)	374, 452, 497
DpnI	GATC	3 cut(s)	78, 302, 495
DpnII	GATC	3 cut(s)	76, 300, 493
DraI	TTTAAA	1 cut(s)	337
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	5 cut(s)	42, 115, 284, 462, 797
Eam1104I	CTCTTC	4 cut(s)	35, 198, 240, 328
EarI	CTCTTC	4 cut(s)	35, 198, 240, 328
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	179, 347
Eco53kI	GAGCTC	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
FaqI	GGGAC	4 cut(s)	165, 194, 265, 554
FatI	CATG	7 cut(s)	73, 212, 276, 363, 378, 441, 561
FauI	CCCGC	3 cut(s)	349, 541, 610
FbaI	TGATCA	1 cut(s)	76
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	14, 576
GlaI	GCGC	1 cut(s)	406
HaeIII	GGCC	6 cut(s)	44, 117, 135, 286, 464, 799
HapII	CCGG	3 cut(s)	233, 283, 572
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	63, 424
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	233, 283, 572
HphI	GGTGA	2 cut(s)	71, 222
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188III	TCNNGA	7 cut(s)	58, 60, 256, 364, 421, 428, 819
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	92, 283
HpyCH4III	ACNGT	3 cut(s)	351, 398, 568
HpyCH4V	TGCA	6 cut(s)	124, 216, 242, 441, 700, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 581
HpyF3I	CTNAG	3 cut(s)	374, 452, 497
Hsp92II	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
HspAI	GCGC	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	76, 300, 493
LmnI	GCTCC	3 cut(s)	155, 453, 739
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	2 cut(s)	14, 576
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	78, 302, 495
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	3 cut(s)	76, 300, 493
MboII	GAAGA	7 cut(s)	22, 185, 257, 315, 667, 758, 769
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	3 cut(s)	44, 464, 799
MluCI	AATT	6 cut(s)	359, 628, 643, 664, 749, 771
MluNI	TGGCCA	3 cut(s)	44, 464, 799
Mox20I	TGGCCA	3 cut(s)	44, 464, 799
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	3 cut(s)	44, 464, 799
MseI	TTAA	4 cut(s)	293, 336, 393, 642
Msp20I	TGGCCA	3 cut(s)	44, 464, 799
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	3 cut(s)	233, 283, 572
MspR9I	CCNGG	3 cut(s)	283, 572, 586
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	2 cut(s)	299, 429
MwoI	GCNNNNNNNGC	2 cut(s)	470, 581
NciI	CCSGG	2 cut(s)	283, 572
NdeII	GATC	3 cut(s)	76, 300, 493
NlaIII	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
NlaIV	GGNNCC	2 cut(s)	181, 449
NmeAIII	GCCGAG	2 cut(s)	111, 180
NruI	TCGCGA	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	58
PagI	TCATGA	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	63, 424
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	181, 449
PspPI	GGNCC	3 cut(s)	134, 179, 347
PsuI	RGATCY	1 cut(s)	493
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	2 cut(s)	71, 353
RsaNI	GTAC	2 cut(s)	70, 352
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	293, 336, 393, 642
Sau3AI	GATC	3 cut(s)	76, 300, 493
Sau96I	GGNCC	3 cut(s)	134, 179, 347
ScrFI	CCNGG	3 cut(s)	283, 572, 586
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	1 cut(s)	766
Sfr274I	CTCGAG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	179, 347
SlaI	CTCGAG	1 cut(s)	58
SmlI	CTYRAG	3 cut(s)	8, 58, 254
SmoI	CTYRAG	3 cut(s)	8, 58, 254
Sse9I	AATT	6 cut(s)	359, 628, 643, 664, 749, 771
SsiI	CCGC	5 cut(s)	148, 297, 342, 548, 617
SspMI	CTAG	2 cut(s)	14, 576
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	281, 570, 584
TaaI	ACNGT	3 cut(s)	351, 398, 568
TaqI	TCGA	2 cut(s)	59, 422
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	6 cut(s)	359, 628, 643, 664, 749, 771
TfiI	GAWTC	2 cut(s)	63, 424
Tru1I	TTAA	4 cut(s)	293, 336, 393, 642
Tru9I	TTAA	4 cut(s)	293, 336, 393, 642
TspDTI	ATGAA	6 cut(s)	265, 352, 498, 641, 721, 729
TspGWI	ACGGA	2 cut(s)	40, 526
VpaK11BI	GGWCC	2 cut(s)	179, 347
XapI	RAATTY	3 cut(s)	359, 628, 664
XhoI	CTCGAG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	14, 576
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.