Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010332.1

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

17993 .. 18616

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010332.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggaatgggcactagcagagctgattaatcacccaaaggtgcttaagaaagcaagagaagaaatcgatcaggttgttaaaagtgaacggttagttggagaatcggatggtccaaatcttccatacatccaagccatcataaaagaaacatataggctacacccaccactgtctttgctcaggaaaagatctacagaacaatgtcaaattggcagatatgtcatccctaagaacacattgatatttgtgaacatttgggcaattggaagggaccctaaatactgggaaaacccattaaatttttggcctgatagattcttacaagttgatgggagggacggagcaagcaaattagatgtaagaggacaacattttgaacttatcccatttgggtctggaaggaggatatgtgctggcataaacttaaccatgaaaatgctacctggattactagcagctatgattcagtgctttgattggaaggttgttggaacagatcgtaagatgaacaatactaatgttcttgatatggatgaagggcctggactaacaaatccaagggcccatgaccttgtttgtgttccgataactcgattcagcccacctagtattattgattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

207

Amino Acids

23.57

Weight (kDa)

8.68

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	298
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	442, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	2 cut(s)	22, 458
AluI	AGCT	2 cut(s)	22, 458
AoxI	GGCC	3 cut(s)	305, 539, 561
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	298
AseI	ATTAAT	1 cut(s)	27
AspS9I	GGNCC	5 cut(s)	110, 271, 539, 561, 562
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	110, 271
BaeGI	GKGCMC	2 cut(s)	13, 565
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	3 cut(s)	101, 143, 323
BciT130I	CCWGG	2 cut(s)	444, 543
BfaI	CTAG	3 cut(s)	14, 452, 606
BfmI	CTRYAG	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	444, 543
Bme18I	GGWCC	2 cut(s)	110, 271
BmgT120I	GGNCC	5 cut(s)	110, 271, 539, 561, 562
BmiI	GGNNCC	3 cut(s)	272, 273, 563
BmrFI	CCNGG	2 cut(s)	444, 543
BmrI	ACTGGG	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	444, 543
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	4 cut(s)	112, 126, 222, 538
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	2 cut(s)	13, 565
BseXI	GCAGC	1 cut(s)	467
BshFI	GGCC	3 cut(s)	307, 541, 563
BshVI	ATCGAT	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	284, 350
BsmFI	GGGAC	2 cut(s)	284, 350
BsnI	GGCC	3 cut(s)	307, 541, 563
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	13, 565
Bsp143I	GATC	3 cut(s)	67, 188, 496
BspANI	GGCC	3 cut(s)	307, 541, 563
BspCNI	CTCAG	1 cut(s)	192
BspDI	ATCGAT	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	620
BspLI	GGNNCC	3 cut(s)	272, 273, 563
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	3 cut(s)	67, 188, 496
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	444, 543
Bst4CI	ACNGT	2 cut(s)	90, 171
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	346, 415
BstDEI	CTNAG	2 cut(s)	179, 228
BstF5I	GGATG	4 cut(s)	112, 126, 222, 538
BstKTI	GATC	3 cut(s)	70, 191, 499
BstMBI	GATC	3 cut(s)	67, 188, 496
BstNI	CCWGG	2 cut(s)	444, 543
BstSCI	CCNGG	2 cut(s)	442, 541
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	2 cut(s)	13, 565
BstV1I	GCAGC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	307, 541, 563
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	4 cut(s)	112, 126, 222, 538
BtsIMutI	CAGTG	2 cut(s)	167, 473
Cac8I	GCNNGC	2 cut(s)	346, 415
CciI	TCATGA	1 cut(s)	620
Cfr13I	GGNCC	5 cut(s)	110, 271, 539, 561, 562
ClaI	ATCGAT	1 cut(s)	66
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	3 cut(s)	430, 566, 621
CviJI	RGCY	8 cut(s)	22, 134, 157, 307, 458, 541, 563, 600
CviKI_1	RGCY	8 cut(s)	22, 134, 157, 307, 458, 541, 563, 600
DdeI	CTNAG	2 cut(s)	179, 228
DpnI	GATC	3 cut(s)	69, 190, 498
DpnII	GATC	3 cut(s)	67, 188, 496
Eco130I	CCWWGG	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	2 cut(s)	110, 271
EcoO109I	RGGNCCY	3 cut(s)	271, 539, 561
EcoRII	CCWGG	2 cut(s)	442, 541
EcoT14I	CCWWGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	3 cut(s)	433, 569, 624
FaqI	GGGAC	2 cut(s)	284, 350
FatI	CATG	3 cut(s)	429, 565, 620
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	4 cut(s)	113, 119, 209, 545
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	14, 452, 606
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	307, 541, 563
Hin1II	CATG	3 cut(s)	433, 569, 624
HinfI	GANTC	5 cut(s)	101, 315, 463, 594, 617
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	86, 250
Hpy188I	TCNGA	2 cut(s)	106, 585
Hpy188III	TCNNGA	4 cut(s)	181, 396, 524, 621
Hpy8I	GTNNAC	2 cut(s)	86, 250
HpyAV	CCTTC	4 cut(s)	261, 393, 475, 530
HpyCH4III	ACNGT	2 cut(s)	90, 171
HpyF3I	CTNAG	2 cut(s)	179, 228
Hsp92II	CATG	3 cut(s)	433, 569, 624
KflI	GGGWCCC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	67, 188, 496
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	467
MaeI	CTAG	3 cut(s)	14, 452, 606
MalI	GATC	3 cut(s)	69, 190, 498
MboI	GATC	3 cut(s)	67, 188, 496
MboII	GAAGA	2 cut(s)	71, 110
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	13, 565
MluCI	AATT	4 cut(s)	207, 261, 298, 350
MmeI	TCCRAC	2 cut(s)	76, 469
MnlI	CCTC	3 cut(s)	327, 356, 396
MseI	TTAA	5 cut(s)	27, 45, 78, 296, 425
MslI	CAYNNNNRTG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	444, 543
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	2 cut(s)	444, 543
NdeII	GATC	3 cut(s)	67, 188, 496
NlaIII	CATG	3 cut(s)	433, 569, 624
NlaIV	GGNNCC	3 cut(s)	272, 273, 563
PagI	TCATGA	1 cut(s)	620
PfeI	GAWTC	5 cut(s)	101, 315, 463, 594, 617
PkrI	GCNGC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	442, 541
PspGI	CCWGG	2 cut(s)	442, 541
PspN4I	GGNNCC	3 cut(s)	272, 273, 563
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	5 cut(s)	110, 271, 539, 561, 562
PspPPI	RGGWCCY	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	5 cut(s)	27, 45, 78, 296, 425
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	67, 188, 496
Sau96I	GGNCC	5 cut(s)	110, 271, 539, 561, 562
ScrFI	CCNGG	2 cut(s)	444, 543
SduI	GDGCHC	2 cut(s)	13, 565
SetI	ASST	8 cut(s)	24, 42, 75, 445, 460, 486, 573, 607
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	110, 271
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	207, 261, 298, 350
SspMI	CTAG	3 cut(s)	14, 452, 606
StyD4I	CCNGG	2 cut(s)	442, 541
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	2 cut(s)	90, 171
TaqI	TCGA	2 cut(s)	66, 592
TasI	AATT	4 cut(s)	207, 261, 298, 350
TfiI	GAWTC	5 cut(s)	101, 315, 463, 594, 617
Tru1I	TTAA	5 cut(s)	27, 45, 78, 296, 425
Tru9I	TTAA	5 cut(s)	27, 45, 78, 296, 425
TscAI	CASTG	2 cut(s)	174, 473
TseI	GCWGC	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	446, 521, 549, 609
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	174, 473
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	110, 271
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XspI	CTAG	3 cut(s)	14, 452, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.