Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

19212028 .. 19218607

Gene Structure 6580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGTCTGGTAAATGGACTCGTTCCGATTCAACACCACTCCTTCGCCCACAACACCATCCATCACAACGCTCCTCCCCCTCAAACGCTTATTCCTCATACTCCTCCATCTCTCTCGAAATGACCTCCGCCGTCTCCGCCACCCCCACCCCCACCGCCCGCTCCGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCCCGCGCAGGTGTGTTTGATGAGAATGGGAAGCTTCTAGGTTCGTCTAGCAGTCCCATTCAGATTTGGAAGGACGGTGATTGCGTTGAGCAATCTTCGACAGATATCTGGCATGCAATAAGTGCGGCTGTAAAAGCAGCATGCTCCCTTGCAGAAGTTTCCGGGGATGAAGTGAAGGGTCTGGGATTTGCGGCTACTTGTTCGCTAGTTGCAGTGGATGCCGATGGCTCTCCTGTTACGGTTTCCTGGAGTGGTGATTCAAGGAGAAACATAATAGTATGGATGGACCATAGAGCTGTAGAACAAGCTGAAAGGATCAATTCACGCAACTCACCCGTCCTGCAGTACTGTGGTGGAGCTCTTTCCCCTGAGATGCAGCCTCCAAAGCTTTTATGGGTGAAAGAAAATCTGCCTGAATCTTGGTCAATGGTCTTCAGGTGGATGGACTTGAGTGATTGGTTATCATACAGGGCCACAGGAGATGATACACGTAGTCTCTGTACAACAGTTTGCAAATGGACATATCTTGGTCATGCACATATGCAGCAAAACAATGAGAAAGATTCTCGAGACATGGAAGCTTGTGGATGGGATGATGATTTCTGGGAGGAGATTGGATTAGGTGATCTTGTAGAAGGGCATCATGCTAAGATAGGACGAAGTGTAGCCTTCCCTGGCCATCCTCTGGGTTCCGGTCTCACATCTACTGCTGCGAAGGAACTAGGTCTTGTAGCAGGGATTCCTGTTGGGACTTCGCTAATTGATGCTCATGCCGGTGGTGTGGGGGTATTGGAAAGTGTGCCTTCATCAGATGCTCAGCCTAAAGAGTCTGATATTGAAGCTCTATGCCATCGTATGGTGTTAGTCTGTGGAACTTCTACTTGCCATATGATTGTATCACAGAAGAAGCTTTTCATTCCAGGTGTTTGGGGTCCATATTGGTCAGCTATGGTACCTGAACAATGGCTCACAGAAGGTGGTCAGAGTGCTACTGGTGCGTTATTGGATTACATAATTGAAAACCATGTTGCTTCTCCTCACCTTGCCAATCGTGCTGCTTCTCAACGCATTTCTGTGTTTGAACTTCTGAACAAGATATTGGAAACAACGATGCATGAACTGAAGCGTCCGTTCCTTGCTTCTTTGACCGAAGATATTCATGTTCTTCCTGATTTTCATGGGAACAGGTCGCCAATTGCGGATCCAAAAGCAAAAGGAATTATCTGTGGTTTAACACTTGATACAAGTGAGAAGCAATTGGCACTTCAGTACCTCGCCACACTGCAAGGTATTGCATATGGCACTCGCCATATTGTAGAGCACTGCAATGCCCAGGGTCACAAAATTGACACTATACTAGCATGTGGAGGCCTTGTTAAGAACCCACTATTCATACAAGAACACGCAGATATAATCGGTTGCCCTATTATTCTTCCACGGGAGAGTGAGCCTGTGCTATTGGGTGCTGCCATTCTTGGTGCTGTAGCTGCAAGGAAATATTCTAGTATGCATGATGCCATGAAGGCCCTGAATGCGTCGGGGCAGGTCATCCATCCATCCAAAGACCCTAAGGTGAAGAAGTACCATGATGCCAAGTACCGCATTTTTCGTGAGCTTTATGACCAGCAGCTATCTCATCGTTCGCTGATGGCTGAAGCCTTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

620

Amino Acids

67.23

Weight (kDa)

5.97

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_N	PF00370	56 - 327	3.1e-23	FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C	PF02782	352 - 562	1.5e-57	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	2 cut(s)	194, 1729
Acc65I	GGTACC	1 cut(s)	1147
AccB1I	GGYRCC	2 cut(s)	185, 1147
AccB7I	CCANNNNNTGG	2 cut(s)	880, 1051
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	201
AciI	CCGC	9 cut(s)	126, 135, 153, 157, 199, 320, 386, 1394, 1795
AclWI	GGATC	3 cut(s)	518, 1391, 1404
AcoI	YGGCCR	1 cut(s)	871
AcuI	CTGAAG	3 cut(s)	613, 1337, 1445
AcyI	GRCGYC	2 cut(s)	174, 180
AfaI	GTAC	6 cut(s)	542, 697, 1149, 1466, 1778, 1793
AfiI	CCNNNNNNNGG	2 cut(s)	880, 1051
AflIII	ACRYGT	1 cut(s)	683
AgsI	TTSAA	5 cut(s)	30, 456, 1034, 1214, 1277
AjnI	CCWGG	4 cut(s)	440, 868, 1114, 1527
AjuI	GAANNNNNNNTTGG	2 cut(s)	1277, 1309
Alw21I	GWGCWC	2 cut(s)	556, 1518
Alw26I	GTCTC	4 cut(s)	136, 695, 759, 896
AlwI	GGATC	3 cut(s)	518, 1391, 1404
Ama87I	CYCGRG	1 cut(s)	762
AoxI	GGCC	4 cut(s)	666, 871, 1564, 1719
ApeKI	GCWGC	9 cut(s)	192, 332, 571, 739, 905, 1250, 1661, 1682, 1822
Asp700I	GAANNNNTTC	2 cut(s)	1106, 1350
Asp718I	GGTACC	1 cut(s)	1147
AspLEI	GCGC	2 cut(s)	197, 203
AspS9I	GGNCC	4 cut(s)	481, 666, 1127, 1720
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	7 cut(s)	284, 461, 519, 604, 830, 1226, 1780
AvaI	CYCGRG	1 cut(s)	762
AvaII	GGWCC	2 cut(s)	481, 1127
AxyI	CCTNAGG	1 cut(s)	1764
BaeI	ACNNNNGTAYC	2 cut(s)	1448, 1481
BalI	TGGCCA	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	1396
BanI	GGYRCC	2 cut(s)	185, 1147
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	2 cut(s)	157, 619
Bbv12I	GWGCWC	2 cut(s)	556, 1518
BbvI	GCAGC	9 cut(s)	204, 344, 583, 751, 892, 1237, 1648, 1669, 1834
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	4 cut(s)	442, 870, 1116, 1529
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	4 cut(s)	136, 695, 759, 896
BfaI	CTAG	6 cut(s)	233, 243, 401, 917, 1553, 1698
BfmI	CTRYAG	3 cut(s)	492, 536, 1677
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	2 cut(s)	194, 1729
BglI	GCCNNNNNGGC	1 cut(s)	1718
BlpI	GCTNAGC	1 cut(s)	1011
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	5 cut(s)	358, 442, 870, 1116, 1529
Bme18I	GGWCC	2 cut(s)	481, 1127
BmeT110I	CYCGRG	1 cut(s)	762
BmgT120I	GGNCC	4 cut(s)	481, 666, 1127, 1720
BmiI	GGNNCC	5 cut(s)	187, 886, 1128, 1149, 1398
BmrFI	CCNGG	5 cut(s)	358, 442, 870, 1116, 1529
BmsI	GCATC	8 cut(s)	403, 558, 844, 949, 997, 1296, 1699, 1774
BpiI	GAAGAC	2 cut(s)	157, 619
BpmI	CTGGAG	1 cut(s)	463
Bpu1102I	GCTNAGC	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	664
BpuMI	CCSGG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	686
BsaHI	GRCGYC	2 cut(s)	174, 180
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	6 cut(s)	169, 357, 868, 1527, 1528, 1631
BsaWI	WCCGGW	1 cut(s)	887
BsaXI	ACNNNNNCTCC	2 cut(s)	1554, 1584
Bsc4I	CCNNNNNNNGG	2 cut(s)	880, 1051
Bse118I	RCCGGY	2 cut(s)	188, 968
Bse1I	ACTGG	1 cut(s)	1192
Bse21I	CCTNAGG	1 cut(s)	1764
Bse3DI	GCAATG	1 cut(s)	1528
BseBI	CCWGG	4 cut(s)	442, 870, 1116, 1529
BseDI	CCNNGG	6 cut(s)	169, 357, 868, 1527, 1528, 1631
BseLI	CCNNNNNNNGG	2 cut(s)	880, 1051
BseMI	GCAATG	1 cut(s)	1528
BseMII	CTCAG	2 cut(s)	555, 1025
BseNI	ACTGG	1 cut(s)	1192
BseRI	GAGGAG	4 cut(s)	61, 91, 818, 1221
BseXI	GCAGC	9 cut(s)	204, 344, 583, 751, 892, 1237, 1648, 1669, 1834
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	4 cut(s)	668, 873, 1566, 1721
BshNI	GGYRCC	2 cut(s)	185, 1147
BsiHKAI	GWGCWC	2 cut(s)	556, 1518
BsiHKCI	CYCGRG	1 cut(s)	762
BsiSI	CCGG	4 cut(s)	189, 357, 888, 969
BslFI	GGGAC	2 cut(s)	234, 958
BslI	CCNNNNNNNGG	2 cut(s)	880, 1051
BsmAI	GTCTC	4 cut(s)	136, 695, 759, 896
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	234, 958
BsmI	GAATGC	1 cut(s)	1732
BsnI	GGCC	4 cut(s)	668, 873, 1566, 1721
Bso31I	GGTCTC	1 cut(s)	896
BsoBI	CYCGRG	1 cut(s)	762
Bsp1286I	GDGCHC	2 cut(s)	556, 1518
Bsp1407I	TGTACA	1 cut(s)	695
Bsp143I	GATC	3 cut(s)	510, 820, 1396
Bsp1720I	GCTNAGC	1 cut(s)	1011
BspACI	CCGC	9 cut(s)	126, 135, 153, 157, 199, 320, 386, 1394, 1795
BspANI	GGCC	4 cut(s)	668, 873, 1566, 1721
BspCNI	CTCAG	2 cut(s)	556, 1024
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	5 cut(s)	187, 886, 1128, 1149, 1398
BspMAI	CTGCAG	1 cut(s)	540
BspMI	ACCTGC	2 cut(s)	194, 1729
BspPI	GGATC	3 cut(s)	518, 1391, 1404
BspT107I	GGYRCC	2 cut(s)	185, 1147
BspTNI	GGTCTC	1 cut(s)	896
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	1528
BsrFI	RCCGGY	2 cut(s)	188, 968
BsrGI	TGTACA	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	1192
BssAI	RCCGGY	2 cut(s)	188, 968
BssECI	CCNNGG	6 cut(s)	169, 357, 868, 1527, 1528, 1631
BssMI	GATC	3 cut(s)	510, 820, 1396
BssNI	GRCGYC	2 cut(s)	174, 180
Bst2UI	CCWGG	4 cut(s)	442, 870, 1116, 1529
Bst4CI	ACNGT	4 cut(s)	272, 436, 545, 703
BstACI	GRCGYC	2 cut(s)	174, 180
BstAPI	GCANNNNNTGC	2 cut(s)	317, 413
BstAUI	TGTACA	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	4 cut(s)	157, 199, 309, 337
BstDEI	CTNAG	4 cut(s)	564, 843, 1011, 1764
BstDSI	CCRYGG	1 cut(s)	1631
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	197, 203
BstKTI	GATC	3 cut(s)	513, 823, 1399
BstMAI	GTCTC	4 cut(s)	136, 695, 759, 896
BstMBI	GATC	3 cut(s)	510, 820, 1396
BstNI	CCWGG	4 cut(s)	442, 870, 1116, 1529
BstNSI	RCATGY	3 cut(s)	311, 339, 1560
BstSCI	CCNGG	5 cut(s)	356, 440, 868, 1114, 1527
BstSFI	CTRYAG	3 cut(s)	492, 536, 1677
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	9 cut(s)	204, 344, 583, 751, 892, 1237, 1648, 1669, 1834
BstV2I	GAAGAC	2 cut(s)	157, 619
BstX2I	RGATCY	1 cut(s)	1396
BstXI	CCANNNNNNTGG	1 cut(s)	1122
BstYI	RGATCY	1 cut(s)	1396
Bsu36I	CCTNAGG	1 cut(s)	1764
BsuRI	GGCC	4 cut(s)	668, 873, 1566, 1721
BtgI	CCRYGG	1 cut(s)	1631
BtsI	GCAGTG	3 cut(s)	414, 1475, 1516
BtsIMutI	CAGTG	3 cut(s)	414, 1475, 1516
BveI	ACCTGC	2 cut(s)	194, 1729
Cac8I	GCNNGC	4 cut(s)	157, 199, 309, 337
CfoI	GCGC	2 cut(s)	197, 203
Cfr10I	RCCGGY	2 cut(s)	188, 968
Cfr13I	GGNCC	4 cut(s)	481, 666, 1127, 1720
CseI	GACGC	3 cut(s)	163, 1310, 1719
Csp6I	GTAC	6 cut(s)	541, 696, 1148, 1465, 1777, 1792
CviQI	GTAC	6 cut(s)	541, 696, 1148, 1465, 1777, 1792
DdeI	CTNAG	4 cut(s)	564, 843, 1011, 1764
DpnI	GATC	3 cut(s)	512, 822, 1398
DpnII	GATC	3 cut(s)	510, 820, 1396
EaeI	YGGCCR	1 cut(s)	871
EciI	GGCGGA	2 cut(s)	115, 124
Ecl136II	GAGCTC	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	1566
Eco24I	GRGCYC	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	896
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	481, 1127
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	613, 1337, 1445
Eco81I	CCTNAGG	1 cut(s)	1764
Eco88I	CYCGRG	1 cut(s)	762
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	1720
EcoRII	CCWGG	4 cut(s)	440, 868, 1114, 1527
EcoRV	GATATC	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	1311, 1707
EcoT38I	GRGCYC	1 cut(s)	556
Esp3I	CGTCTC	1 cut(s)	136
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FaqI	GGGAC	2 cut(s)	234, 958
FauI	CCCGC	2 cut(s)	164, 206
FauNDI	CATATG	3 cut(s)	735, 1083, 1492
FblI	GTMKAC	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	556
FspBI	CTAG	6 cut(s)	233, 243, 401, 917, 1553, 1698
GlaI	GCGC	2 cut(s)	196, 202
GsuI	CTGGAG	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	668, 873, 1566, 1721
HapII	CCGG	4 cut(s)	189, 357, 888, 969
HgaI	GACGC	3 cut(s)	163, 1310, 1719
HhaI	GCGC	2 cut(s)	197, 203
Hin1I	GRCGYC	2 cut(s)	174, 180
Hin6I	GCGC	2 cut(s)	195, 201
HinP1I	GCGC	2 cut(s)	195, 201
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	4 cut(s)	227, 581, 774, 1103
HinfI	GANTC	7 cut(s)	16, 26, 452, 611, 758, 934, 1022
HpaII	CCGG	4 cut(s)	189, 357, 888, 969
HphI	GGTGA	7 cut(s)	284, 461, 519, 604, 830, 1226, 1780
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	6 cut(s)	25, 258, 1006, 1027, 1179, 1284
Hpy188III	TCNNGA	5 cut(s)	113, 762, 764, 1364, 1805
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	4 cut(s)	179, 182, 185, 1735
HpyAV	CCTTC	9 cut(s)	50, 259, 364, 824, 874, 904, 1008, 1163, 1711
HpyCH4III	ACNGT	4 cut(s)	272, 436, 545, 703
HpyCH4IV	ACGT	2 cut(s)	180, 685
HpyF3I	CTNAG	4 cut(s)	564, 843, 1011, 1764
HpySE526I	ACGT	2 cut(s)	180, 685
Hsp92I	GRCGYC	2 cut(s)	174, 180
HspAI	GCGC	2 cut(s)	195, 201
KpnI	GGTACC	1 cut(s)	1151
Kzo9I	GATC	3 cut(s)	510, 820, 1396
LmnI	GCTCC	4 cut(s)	74, 164, 344, 551
Lsp1109I	GCAGC	9 cut(s)	204, 344, 583, 751, 892, 1237, 1648, 1669, 1834
LweI	GCATC	8 cut(s)	403, 558, 844, 949, 997, 1296, 1699, 1774
MaeI	CTAG	6 cut(s)	233, 243, 401, 917, 1553, 1698
MaeII	ACGT	2 cut(s)	180, 685
MaeIII	GTNAC	2 cut(s)	430, 1532
MalI	GATC	3 cut(s)	512, 822, 1398
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	3 cut(s)	510, 820, 1396
MboII	GAAGA	8 cut(s)	157, 282, 619, 1111, 1352, 1358, 1619, 1783
MfeI	CAATTG	2 cut(s)	1389, 1451
MflI	RGATCY	1 cut(s)	1396
MhlI	GDGCHC	2 cut(s)	556, 1518
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	7 cut(s)	514, 954, 1209, 1389, 1413, 1451, 1539
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	2 cut(s)	10, 1031
Mox20I	TGGCCA	1 cut(s)	873
Mph1103I	ATGCAT	2 cut(s)	1311, 1707
MroXI	GAANNNNTTC	2 cut(s)	1106, 1350
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	2 cut(s)	1427, 1572
MslI	CAYNNNNRTG	3 cut(s)	969, 1268, 1521
Msp20I	TGGCCA	1 cut(s)	873
MspI	CCGG	4 cut(s)	189, 357, 888, 969
MspR9I	CCNGG	5 cut(s)	358, 442, 870, 1116, 1529
MunI	CAATTG	2 cut(s)	1389, 1451
Mva1269I	GAATGC	1 cut(s)	1732
MvaI	CCWGG	4 cut(s)	442, 870, 1116, 1529
MvnI	CGCG	1 cut(s)	201
NciI	CCSGG	1 cut(s)	358
NdeI	CATATG	3 cut(s)	735, 1083, 1492
NdeII	GATC	3 cut(s)	510, 820, 1396
NlaIV	GGNNCC	5 cut(s)	187, 886, 1128, 1149, 1398
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	1532
NsiI	ATGCAT	2 cut(s)	1311, 1707
NspI	RCATGY	3 cut(s)	311, 339, 1560
PaeI	GCATGC	2 cut(s)	311, 339
PaeR7I	CTCGAG	1 cut(s)	762
PaqCI	CACCTGC	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	1528
PceI	AGGCCT	1 cut(s)	1566
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 276
PctI	GAATGC	1 cut(s)	1732
PdmI	GAANNNNTTC	2 cut(s)	1106, 1350
PfeI	GAWTC	5 cut(s)	26, 452, 611, 758, 934
PflMI	CCANNNNNTGG	2 cut(s)	880, 1051
PfoI	TCCNGGA	1 cut(s)	440
PleI	GAGTC	2 cut(s)	10, 1030
PpsI	GAGTC	2 cut(s)	10, 1030
Ppu21I	YACGTR	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	4 cut(s)	440, 868, 1114, 1527
PspGI	CCWGG	4 cut(s)	440, 868, 1114, 1527
PspN4I	GGNNCC	5 cut(s)	187, 886, 1128, 1149, 1398
PspPI	GGNCC	4 cut(s)	481, 666, 1127, 1720
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	1396
RsaI	GTAC	6 cut(s)	542, 697, 1149, 1466, 1778, 1793
RsaNI	GTAC	6 cut(s)	541, 696, 1148, 1465, 1777, 1792
RseI	CAYNNNNRTG	3 cut(s)	969, 1268, 1521
SacI	GAGCTC	1 cut(s)	556
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	1427, 1572
Sau3AI	GATC	3 cut(s)	510, 820, 1396
Sau96I	GGNCC	4 cut(s)	481, 666, 1127, 1720
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	2 cut(s)	10, 1031
ScrFI	CCNGG	5 cut(s)	358, 442, 870, 1116, 1529
SduI	GDGCHC	2 cut(s)	556, 1518
SfaNI	GCATC	8 cut(s)	403, 558, 844, 949, 997, 1296, 1699, 1774
SfcI	CTRYAG	3 cut(s)	492, 536, 1677
Sfr274I	CTCGAG	1 cut(s)	762
SgrDI	CGTCGACG	1 cut(s)	176
SinI	GGWCC	2 cut(s)	481, 1127
SlaI	CTCGAG	1 cut(s)	762
SmiMI	CAYNNNNRTG	3 cut(s)	969, 1268, 1521
SmlI	CTYRAG	2 cut(s)	643, 762
SmoI	CTYRAG	2 cut(s)	643, 762
SphI	GCATGC	2 cut(s)	311, 339
Sse9I	AATT	7 cut(s)	514, 954, 1209, 1389, 1413, 1451, 1539
SseBI	AGGCCT	1 cut(s)	1566
SsiI	CCGC	9 cut(s)	126, 135, 153, 157, 199, 320, 386, 1394, 1795
SspI	AATATT	1 cut(s)	1694
SspMI	CTAG	6 cut(s)	233, 243, 401, 917, 1553, 1698
SstI	GAGCTC	1 cut(s)	556
StuI	AGGCCT	1 cut(s)	1566
StyD4I	CCNGG	5 cut(s)	356, 440, 868, 1114, 1527
TaaI	ACNGT	4 cut(s)	272, 436, 545, 703
TaiI	ACGT	2 cut(s)	183, 688
TaqI	TCGA	4 cut(s)	114, 177, 293, 763
TaqII	GACCGA	1 cut(s)	1358
TasI	AATT	7 cut(s)	514, 954, 1209, 1389, 1413, 1451, 1539
TatI	WGTACW	2 cut(s)	540, 695
TauI	GCSGC	2 cut(s)	323, 389
TfiI	GAWTC	5 cut(s)	26, 452, 611, 758, 934
Tru1I	TTAA	2 cut(s)	1427, 1572
Tru9I	TTAA	2 cut(s)	1427, 1572
TscAI	CASTG	3 cut(s)	414, 1482, 1523
TseFI	GTSAC	1 cut(s)	1532
TseI	GCWGC	9 cut(s)	192, 332, 571, 739, 905, 1250, 1661, 1682, 1822
Tsp45I	GTSAC	1 cut(s)	1532
TspDTI	ATGAA	8 cut(s)	378, 990, 1099, 1326, 1343, 1361, 1576, 1730
TspGWI	ACGGA	2 cut(s)	151, 1314
TspRI	CASTG	3 cut(s)	414, 1482, 1523
Van91I	CCANNNNNTGG	2 cut(s)	880, 1051
VpaK11BI	GGWCC	2 cut(s)	481, 1127
XceI	RCATGY	3 cut(s)	311, 339, 1560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XhoI	CTCGAG	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	2 cut(s)	1106, 1350
XspI	CTAG	6 cut(s)	233, 243, 401, 917, 1553, 1698
ZraI	GACGTC	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	2 cut(s)	1311, 1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.