Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

1271959 .. 1272591

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAGGCTCCATCCAAGTCTTTTTTCTGCTAGCCATGCTAATGGCTTTAGCCGCCATTACTCTTCCCGCATCAACCCCGGAAGAAGATCAACAGGAATGGTTCTCCGATGAGGAAAATGATACTCCAAATGAACCATCAGATGATCTCCCTGCGACCTTAAGCCAACCAAAAACTTCCCTTAGGGGAGCAAGCCGCTTCCTTGCCACCCGGGCTGTTGCAACTACCTGTGACAAAAACCCTAAGGTTTGTAAGGCTGCAGGCAGTGCGGGGCGAGATTGCTGCAAGAAGAAGTGTGTGAATTTGAAGACGGACAGAGTCAATTGCGGCAAGTGTGGGAGGAAATGCAAGTACTCGGAGATATGCTGCAAAGGAAAGTGTCTGAATCCAATGTCTGACAAGAAAAACTGTGGGAGCTGCAACAACAAGTGCAAGAAAGGCAGTTCGTGTGTGTACGGAATGTGCAGCTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

158

Amino Acids

17.09

Weight (kDa)

8.84

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	75 - 158	3.5e-29	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	54, 69, 196, 269, 327
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	353, 455
AflII	CTTAAG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	2 cut(s)	417, 468
AluI	AGCT	2 cut(s)	417, 468
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	5 cut(s)	257, 282, 366, 417, 465
ApoI	RAATTY	1 cut(s)	301
AsuC2I	CCSGG	3 cut(s)	80, 211, 212
AsuNHI	GCTAGC	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	210
AxyI	CCTNAGG	2 cut(s)	182, 243
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	244, 269, 353, 404
BccI	CCATC	2 cut(s)	20, 145
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BcnI	CCSGG	3 cut(s)	80, 211, 212
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	8 cut(s)	54, 196, 258, 283, 328, 367, 418, 466
BlsI	GCNGC	8 cut(s)	55, 197, 259, 284, 329, 368, 419, 467
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	3 cut(s)	80, 211, 212
BmeT110I	CYCGRG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	3 cut(s)	80, 211, 212
BmsI	GCATC	1 cut(s)	80
BmtI	GCTAGC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	314
BpuMI	CCSGG	3 cut(s)	80, 211, 212
BsaJI	CCNNGG	2 cut(s)	78, 210
Bse21I	CCTNAGG	2 cut(s)	182, 243
BseDI	CCNNGG	2 cut(s)	78, 210
BseGI	GGATG	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	244, 269, 353, 404
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	80, 211
BsoBI	CYCGRG	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	88, 145
BspACI	CCGC	5 cut(s)	54, 69, 196, 269, 327
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	262
BspOI	GCTAGC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	78, 210
BssMI	GATC	2 cut(s)	88, 145
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	33, 193, 262
BstDEI	CTNAG	2 cut(s)	182, 243
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	91, 148
BstMBI	GATC	2 cut(s)	88, 145
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 53, 212, 266, 438
BstSCI	CCNGG	3 cut(s)	78, 209, 210
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	4 cut(s)	244, 269, 353, 404
BstV2I	GAAGAC	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	43
Bsu36I	CCTNAGG	2 cut(s)	182, 243
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	33, 193, 262
Cfr9I	CCCGGG	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	352, 454
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	2 cut(s)	352, 454
DdeI	CTNAG	2 cut(s)	182, 243
DpnI	GATC	2 cut(s)	90, 147
DpnII	GATC	2 cut(s)	88, 145
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco81I	CCTNAGG	2 cut(s)	182, 243
Eco88I	CYCGRG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	475
FaeI	CATG	1 cut(s)	40
FaiI	YATR	4 cut(s)	38, 364, 471, 475
FatI	CATG	1 cut(s)	36
FauI	CCCGC	2 cut(s)	76, 262
Fnu4HI	GCNGC	8 cut(s)	54, 196, 258, 283, 328, 367, 418, 466
Fsp4HI	GCNGC	8 cut(s)	54, 196, 258, 283, 328, 367, 418, 466
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	8 cut(s)	54, 196, 258, 283, 328, 367, 418, 466
HapII	CCGG	2 cut(s)	80, 211
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	2 cut(s)	318, 385
HpaII	CCGG	2 cut(s)	80, 211
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	5 cut(s)	109, 142, 358, 384, 397
Hpy8I	GTNNAC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	9 cut(s)	221, 260, 285, 348, 369, 420, 432, 465, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 53, 212, 266, 438
HpyF3I	CTNAG	2 cut(s)	182, 243
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	88, 145
LmnI	GCTCC	3 cut(s)	14, 188, 414
LpnPI	CCDG	6 cut(s)	80, 93, 165, 224, 241, 246
Lsp1109I	GCAGC	4 cut(s)	244, 269, 353, 404
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	90, 147
MboI	GATC	2 cut(s)	88, 145
MboII	GAAGA	5 cut(s)	56, 95, 98, 301, 319
MfeI	CAATTG	1 cut(s)	322
MluCI	AATT	2 cut(s)	301, 322
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	2 cut(s)	106, 333
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	160
MspI	CCGG	2 cut(s)	80, 211
MspR9I	CCNGG	3 cut(s)	80, 211, 212
MunI	CAATTG	1 cut(s)	322
MwoI	GCNNNNNNNGC	5 cut(s)	37, 53, 212, 266, 438
NciI	CCSGG	3 cut(s)	80, 211, 212
NdeII	GATC	2 cut(s)	88, 145
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	8 cut(s)	55, 197, 259, 284, 329, 368, 419, 467
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	2 cut(s)	353, 455
RsaNI	GTAC	2 cut(s)	352, 454
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	8 cut(s)	54, 196, 258, 283, 328, 367, 418, 466
Sau3AI	GATC	2 cut(s)	88, 145
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	3 cut(s)	80, 211, 212
SetI	ASST	5 cut(s)	161, 230, 249, 419, 470
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	258
SmaI	CCCGGG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	301, 322
SsiI	CCGC	5 cut(s)	54, 69, 196, 269, 327
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	78, 209, 210
TaaI	ACNGT	1 cut(s)	410
TasI	AATT	2 cut(s)	301, 322
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	3 cut(s)	56, 198, 330
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	5 cut(s)	257, 282, 366, 417, 465
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	17, 147
TspGWI	ACGGA	2 cut(s)	326, 471
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	317
Vha464I	CTTAAG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	301
XmaI	CCCGGG	1 cut(s)	210
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.