Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

1274493 .. 1274972

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTGATGGCTTTAGCCGTTACTCTTTCTGCAACACTAGTCGAAGAAGAACTATTTTCCGACAAGGGAACCGAGGCTACAAATGATCACGAAACCTTTGATGGTGATCTTCCAATGGATGCCAAAAGCCAAGGGAAAACCTCTCTGAGGGGAACAAGTAGCGTCTTCCTTGGTTCTACTTCTAGGGCAGTGAAAACATCAACATGCGACAATAACCCTAAGGTTTGTAGGGCCGCTGCAAACAGCCCAAAATCACATTGCTGCCACAACAAGTGTGTGGATGTGAAGACGGACAGACTCAACTGCGGGAAATGTGGGGTGAAATGCAAGCACGCAGAGATATGCTGCAACGGTCATGTTGGATGTGCACACAATGTCCGACAAGAAACACTGCGGGAGCTGCGACAACCATTGCAAGCGAGGTGGTTCTTGTGCGTTTGGGATGTGCAGCTATGCTTAGGAATTACGAAGCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

8.23

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	67 - 120	5.6e-12	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	234, 306, 394
AfiI	CCNNNNNNNGG	1 cut(s)	147
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	3 cut(s)	400, 451, 472
AluI	AGCT	3 cut(s)	400, 451, 472
Alw21I	GWGCWC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	231
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	5 cut(s)	236, 261, 345, 400, 448
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	116, 331
AxyI	CCTNAGG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	157, 293
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	5 cut(s)	223, 248, 332, 387, 460
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	2
BclI	TGATCA	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	38, 183, 473
BisI	GCNGC	6 cut(s)	234, 237, 262, 346, 401, 449
BlsI	GCNGC	6 cut(s)	235, 238, 263, 347, 402, 450
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	157, 293
Bpu10I	CCTNAGC	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	72, 130, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	2 cut(s)	256, 410
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	72, 130, 169
BseGI	GGATG	4 cut(s)	124, 286, 368, 448
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	2 cut(s)	256, 410
BseMII	CTCAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	5 cut(s)	223, 248, 332, 387, 460
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	147
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	85, 106
BspACI	CCGC	3 cut(s)	234, 306, 394
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	256, 410
BssECI	CCNNGG	3 cut(s)	72, 130, 169
BssMI	GATC	2 cut(s)	85, 106
BssT1I	CCWWGG	2 cut(s)	130, 169
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	329, 333, 417
BstDEI	CTNAG	3 cut(s)	146, 219, 457
BstENI	CCTNNNNNAGG	1 cut(s)	145
BstF5I	GGATG	4 cut(s)	124, 286, 368, 448
BstKTI	GATC	2 cut(s)	88, 109
BstMBI	GATC	2 cut(s)	85, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	5 cut(s)	223, 248, 332, 387, 460
BstV2I	GAAGAC	2 cut(s)	157, 293
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	4 cut(s)	124, 286, 368, 448
BtsI	GCAGTG	2 cut(s)	195, 389
BtsIMutI	CAGTG	2 cut(s)	195, 389
Cac8I	GCNNGC	3 cut(s)	329, 333, 417
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviAII	CATG	2 cut(s)	204, 356
CviJI	RGCY	9 cut(s)	11, 17, 77, 129, 233, 246, 400, 451, 472
CviKI_1	RGCY	9 cut(s)	11, 17, 77, 129, 233, 246, 400, 451, 472
DdeI	CTNAG	3 cut(s)	146, 219, 457
DpnI	GATC	2 cut(s)	87, 108
DpnII	GATC	2 cut(s)	85, 106
Eco130I	CCWWGG	2 cut(s)	130, 169
Eco81I	CCTNAGG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	130, 169
ErhI	CCWWGG	2 cut(s)	130, 169
FaeI	CATG	2 cut(s)	207, 359
FaiI	YATR	4 cut(s)	205, 343, 357, 454
FatI	CATG	2 cut(s)	203, 355
FauI	CCCGC	2 cut(s)	299, 387
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	6 cut(s)	234, 237, 262, 346, 401, 449
FokI	GGATG	4 cut(s)	131, 293, 375, 455
Fsp4HI	GCNGC	6 cut(s)	234, 237, 262, 346, 401, 449
FspBI	CTAG	3 cut(s)	38, 183, 473
GluI	GCNGC	6 cut(s)	234, 237, 262, 346, 401, 449
HaeIII	GGCC	1 cut(s)	233
HgaI	GACGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	207, 359
HinfI	GANTC	1 cut(s)	297
HphI	GGTGA	2 cut(s)	116, 331
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	3 cut(s)	61, 147, 380
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	7 cut(s)	32, 239, 327, 348, 368, 415, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	3 cut(s)	146, 219, 457
Hsp92II	CATG	2 cut(s)	207, 359
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 106
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	5 cut(s)	223, 248, 332, 387, 460
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	38, 183, 473
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	87, 108
MboI	GATC	2 cut(s)	85, 106
MboII	GAAGA	5 cut(s)	56, 59, 101, 157, 298
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	3 cut(s)	84, 340, 403
MnlI	CCTC	4 cut(s)	67, 141, 151, 414
MslI	CAYNNNNRTG	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	2 cut(s)	85, 106
NlaIII	CATG	2 cut(s)	207, 359
NlaIV	GGNNCC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	207
PkrI	GCNGC	6 cut(s)	235, 238, 263, 347, 402, 450
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	61, 93
RseI	CAYNNNNRTG	1 cut(s)	202
SatI	GCNGC	6 cut(s)	234, 237, 262, 346, 401, 449
Sau3AI	GATC	2 cut(s)	85, 106
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	7 cut(s)	98, 143, 225, 402, 425, 453, 474
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	3 cut(s)	234, 306, 394
SspMI	CTAG	3 cut(s)	38, 183, 473
StyI	CCWWGG	2 cut(s)	130, 169
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	236
TscAI	CASTG	2 cut(s)	195, 396
TseI	GCWGC	5 cut(s)	236, 261, 345, 400, 448
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	195, 396
VneI	GTGCAC	1 cut(s)	366
XagI	CCTNNNNNAGG	1 cut(s)	145
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	3 cut(s)	38, 183, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.