Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

8941135 .. 8941885

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTCGTGACCTCGCCCGAGCTCGCAAAAGAGTTCCTCAAAACCCATGAACTCTCCTTTGTATCCTGCGCTCAGTCCGCCGCCATCGAACGCATAACCTACGATTCTTCCTTGGCATTTTCTCCCTACGGACCAGACTGGAAGTTTATCAAGAAGGTGACGGTGAACAAGCTCCTCAGCAGCCGTAGCGTGGGCAAGTTTCATTCCATTAGGGCGGACGAGTACTCTCGGCTCCTAAGACTCTTGGCCGAGAGAGCCGAGAGTTGTCTGGCTATAAACCTCAGCGAAGAGCTGCTGAGGCTTTGCCACAACATTATAGGCCAGATGATGCTTGGGAAGTACTCCACTGCAGCTTCGAGCAGCACAGAGCGGGCTGAGGAGGCAAGGTTGTTGGTTCGAGAGGCGACGAGGATCTTCGGAGAGTTGAACTTGTGTGATTTTAATATGGTGTGGAAGAAACTGGACTTACAAGGGTTTGGGAAGAGAATTGATGACACGCATCTCAAGTTTGATGAATTGGTGGAGAAGGTTGTTAAGGAACGTGAACAATTGAGACTTAAGAACAAGAAAACTAATGGAGGAGAGGAAAAGGACGAGGAGGTCAAGGATTTTCTAAGCATTTTGCTTGATATGTTGGAAGATGAGAGTGGTGAGAGTGCGGAGGGTTCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

225

Amino Acids

25.44

Weight (kDa)

5.58

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 218	1.5e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	370
AciI	CCGC	5 cut(s)	78, 81, 215, 370, 659
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	246
AfaI	GTAC	2 cut(s)	224, 341
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	427
AluBI	AGCT	4 cut(s)	22, 172, 292, 353
AluI	AGCT	4 cut(s)	22, 172, 292, 353
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	246, 319
ApeKI	GCWGC	4 cut(s)	180, 292, 350, 360
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	169, 175, 662
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvCI	CCTCAGC	4 cut(s)	176, 281, 296, 375
BbvI	GCAGC	4 cut(s)	192, 279, 362, 372
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	547
BfmI	CTRYAG	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	73
BisI	GCNGC	5 cut(s)	81, 181, 293, 351, 361
BlsI	GCNGC	5 cut(s)	82, 182, 294, 352, 362
BmcAI	AGTACT	2 cut(s)	224, 341
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	233
BmsI	GCATC	2 cut(s)	318, 508
Bpu10I	CCTNAGC	4 cut(s)	176, 281, 296, 375
BpuEI	CTTGAG	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	143, 465
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	5 cut(s)	86, 190, 287, 295, 366
BseNI	ACTGG	2 cut(s)	143, 465
BseRI	GAGGAG	4 cut(s)	164, 392, 594, 611
BseXI	GCAGC	4 cut(s)	192, 279, 362, 372
BshFI	GGCC	2 cut(s)	248, 321
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	248, 321
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	5 cut(s)	78, 81, 215, 370, 659
BspANI	GGCC	2 cut(s)	248, 321
BspCNI	CTCAG	5 cut(s)	85, 189, 288, 294, 367
BspLI	GGNNCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	143, 465
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	282, 476
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	24, 372
BstDEI	CTNAG	7 cut(s)	72, 176, 236, 281, 296, 375, 614
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 186, 254, 298, 380
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	4 cut(s)	192, 279, 362, 372
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	248, 321
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	24, 372
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	223, 340
CviAII	CATG	1 cut(s)	47
CviQI	GTAC	2 cut(s)	223, 340
DdeI	CTNAG	7 cut(s)	72, 176, 236, 281, 296, 375, 614
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	282, 476
EarI	CTCTTC	2 cut(s)	282, 476
EciI	GGCGGA	2 cut(s)	67, 230
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	50
FaiI	YATR	7 cut(s)	48, 95, 275, 317, 446, 632, 673
FatI	CATG	1 cut(s)	46
FauI	CCCGC	1 cut(s)	363
Fnu4HI	GCNGC	5 cut(s)	81, 181, 293, 351, 361
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	5 cut(s)	81, 181, 293, 351, 361
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	5 cut(s)	81, 181, 293, 351, 361
HaeIII	GGCC	2 cut(s)	248, 321
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	104, 240
HphI	GGTGA	3 cut(s)	169, 175, 662
Hpy166II	GTNNAC	2 cut(s)	166, 545
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	3 cut(s)	7, 151, 398
Hpy8I	GTNNAC	2 cut(s)	166, 545
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	148, 520
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 186, 254, 298, 380
HpyF3I	CTNAG	7 cut(s)	72, 176, 236, 281, 296, 375, 614
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	411
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	177, 237
LpnPI	CCDG	6 cut(s)	79, 124, 147, 254, 335, 446
Lsp1109I	GCAGC	4 cut(s)	192, 279, 362, 372
LweI	GCATC	2 cut(s)	318, 508
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	7, 157
MalI	GATC	1 cut(s)	413
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	1 cut(s)	411
MboII	GAAGA	6 cut(s)	99, 299, 406, 466, 493, 650
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	486, 515, 548
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	615
MseI	TTAA	3 cut(s)	441, 534, 558
MspCI	CTTAAG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	548
MwoI	GCNNNNNNNGC	5 cut(s)	77, 186, 254, 298, 380
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	233
NmeAIII	GCCGAG	3 cut(s)	208, 274, 283
NmuCI	GTSAC	2 cut(s)	7, 157
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	82, 182, 294, 352, 362
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	411
RsaI	GTAC	2 cut(s)	224, 341
RsaNI	GTAC	2 cut(s)	223, 340
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	441, 534, 558
SatI	GCNGC	5 cut(s)	81, 181, 293, 351, 361
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	2 cut(s)	224, 341
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	318, 508
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	503, 557
SmoI	CTYRAG	2 cut(s)	503, 557
Sse9I	AATT	3 cut(s)	486, 515, 548
SsiI	CCGC	5 cut(s)	78, 81, 215, 370, 659
SstI	GAGCTC	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	3 cut(s)	87, 356, 397
TasI	AATT	3 cut(s)	486, 515, 548
TatI	WGTACW	2 cut(s)	222, 339
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	441, 534, 558
Tru9I	TTAA	3 cut(s)	441, 534, 558
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	7, 157
TseI	GCWGC	4 cut(s)	180, 292, 350, 360
Tsp45I	GTSAC	2 cut(s)	7, 157
TspDTI	ATGAA	3 cut(s)	63, 191, 528
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
ZrmI	AGTACT	2 cut(s)	224, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.