Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

8673256 .. 8675871

Gene Structure 2616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1101600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCAGTCCTTGACCTCCTCTTTCTATTCTCTGTTCTCTTCATCATTTATCTTGTTCTCCGACCCGTCTTCACCTCCAAATCCCAAACCCTACTCACTCCAAGCCCCTTTGCCCTACCCATCATCGGCCATTTCCACCTCATTGGCCCTCTCATCCACCGATCCTTCTACAACCTATCCCTCCGATTCGGCCCCTTATTCTCTATCCGCCTTGGCTCCATCCCAGGCATCGTGGTATCCTCGCCCGAGATCGTGAAGGAGTTCCTCGAAACCCCACGAGCTCTCCTTCATATCCCACATAGAAAGCTCATCATTAATGGGTTTCTAAGCAACCGTAGCGTCAGCAACTTTGCTCCGATTCGAACACAAGAGTACCTAAGGCTTTTGAGGCTGTTGACCAAGAAAGCTGAGAGTAGTGAAGCTGTAAATCTCACCGAGGAGCTACCAAAGCTTTCCAACAATGTGATTGCAAAGATGATTTTGGGAAGTTCTGAAGGTCCGAGTGATGAAGGCAGGGATGAAGAAGCTAGGGTTGTGGTGAGAGAGGTGACAAGGATTTTTGGGGAGTTTAATTTGTCAGATTTTGTTTGGTTTTGCAAGAAGACTGATTTGCAAGGATTTGGGAAGAGAATTGAAGACACTCATAGGAGATACAGCGCGTTAGTGGAGAAGGTTATTTCAGAACGTGAAGACTTGAGAAAGAAAAACATGAGAAATGGAGGATGCAGTGGTGGCCACGAGGAGGAGGAAGTGGAGGAGGCGAAGGGTTTTCTCGACATTTTGCTTGATTTGGATTTCTTCACTGCAGAAACAGACACAACCGCCATTTCAGTGGAGTGGGCGCTAGCAGAGCTCATCAACCATCCAAAGGTGCTTAACAAAGCAAGGGAGGAGATCGAAAGATTCGTCGGGAACGGACGACTACTCGTAGAATCGGACGGTCCAAACCTTCCATACATCCAAGCCATCATAAAAGAAACACTTAGACTATTAACACTTGTAGATAGAGAAGAACAAGAAATTACAGAGAAACAATGGCAGAGAGAAGGGAATGTATTGATAGCTTTCAGAGAATGTTTACAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

363

Amino Acids

41.31

Weight (kDa)

6.0

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	100 - 342	3.4e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	659
AciI	CCGC	2 cut(s)	208, 822
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	127, 733
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	125, 742, 868
AgsI	TTSAA	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	9 cut(s)	281, 307, 407, 422, 442, 451, 527, 853, 1064
AluI	AGCT	9 cut(s)	281, 307, 407, 422, 442, 451, 527, 853, 1064
Alw21I	GWGCWC	2 cut(s)	283, 855
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	4 cut(s)	127, 145, 190, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	891, 923
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	659, 844
AspS9I	GGNCC	4 cut(s)	146, 191, 497, 941
AsuHPI	GGTGA	4 cut(s)	64, 424, 550, 559
AsuII	TTCGAA	1 cut(s)	361
AsuNHI	GCTAGC	1 cut(s)	844
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	497, 941
AxyI	CCTNAGG	1 cut(s)	377
BaeI	ACNNNNGTAYC	2 cut(s)	356, 389
BalI	TGGCCA	1 cut(s)	735
BanII	GRGCYC	2 cut(s)	283, 855
BauI	CACGAG	2 cut(s)	276, 737
BbsI	GAAGAC	4 cut(s)	61, 608, 642, 696
Bbv12I	GWGCWC	2 cut(s)	283, 855
BccI	CCATC	4 cut(s)	128, 227, 870, 974
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	528, 845
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	845
BfuI	GTATCC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	2 cut(s)	497, 941
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	146, 191, 497, 941
BmiI	GGNNCC	2 cut(s)	193, 217
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	237, 713
BmtI	GCTAGC	1 cut(s)	848
BpiI	GAAGAC	4 cut(s)	61, 608, 642, 696
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	211, 223, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 742, 868
Bse1I	ACTGG	1 cut(s)	5
Bse21I	CCTNAGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	211, 223, 435
BseGI	GGATG	6 cut(s)	153, 219, 523, 728, 862, 957
BseLI	CCNNNNNNNGG	3 cut(s)	125, 742, 868
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	6 cut(s)	8, 452, 755, 758, 770, 905
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	4 cut(s)	129, 147, 192, 735
BsiHKAI	GWGCWC	2 cut(s)	283, 855
BsiHKCI	CYCGRG	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	125, 742, 868
BsnI	GGCC	4 cut(s)	129, 147, 192, 735
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	283, 855
Bsp143I	GATC	3 cut(s)	161, 249, 894
BspACI	CCGC	2 cut(s)	208, 822
BspANI	GGCC	4 cut(s)	129, 147, 192, 735
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	2 cut(s)	193, 217
BspMAI	CTGCAG	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	211, 223, 435
BssMI	GATC	3 cut(s)	161, 249, 894
BssSI	CACGAG	2 cut(s)	276, 737
BssT1I	CCWWGG	1 cut(s)	211
Bst2BI	CACGAG	2 cut(s)	276, 737
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	335, 941
Bst6I	CTCTTC	2 cut(s)	44, 620
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	4 cut(s)	326, 377, 408, 983
BstF5I	GGATG	6 cut(s)	153, 219, 523, 728, 862, 957
BstFNI	CGCG	1 cut(s)	659
BstH2I	RGCGCY	1 cut(s)	845
BstHHI	GCGC	2 cut(s)	659, 844
BstKTI	GATC	3 cut(s)	164, 252, 897
BstMBI	GATC	3 cut(s)	161, 249, 894
BstMWI	GCNNNNNNNGC	5 cut(s)	336, 388, 448, 732, 850
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	659
BstV2I	GAAGAC	4 cut(s)	61, 608, 642, 696
BstXI	CCANNNNNNTGG	2 cut(s)	143, 832
Bsu36I	CCTNAGG	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	129, 147, 192, 735
BtsCI	GGATG	6 cut(s)	153, 219, 523, 728, 862, 957
BtsI	GCAGTG	2 cut(s)	733, 801
BtsIMutI	CAGTG	3 cut(s)	733, 801, 837
Cac8I	GCNNGC	1 cut(s)	846
CfoI	GCGC	2 cut(s)	659, 844
Cfr13I	GGNCC	4 cut(s)	146, 191, 497, 941
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	4 cut(s)	326, 377, 408, 983
DpnI	GATC	3 cut(s)	163, 251, 896
DpnII	GATC	3 cut(s)	161, 249, 894
EaeI	YGGCCR	2 cut(s)	127, 733
Eam1104I	CTCTTC	2 cut(s)	44, 620
EarI	CTCTTC	2 cut(s)	44, 620
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	2 cut(s)	281, 853
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	283, 855
Eco47I	GGWCC	2 cut(s)	497, 941
Eco53kI	GAGCTC	2 cut(s)	281, 853
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	2 cut(s)	281, 853
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	2 cut(s)	283, 855
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	712
FaiI	YATR	6 cut(s)	291, 300, 645, 710, 955, 971
FalI	AAGNNNNNCTT	2 cut(s)	966, 998
FatI	CATG	1 cut(s)	708
FokI	GGATG	6 cut(s)	140, 206, 530, 735, 849, 944
FriOI	GRGCYC	2 cut(s)	283, 855
FspBI	CTAG	2 cut(s)	528, 845
GlaI	GCGC	2 cut(s)	658, 843
HaeII	RGCGCY	1 cut(s)	845
HaeIII	GGCC	4 cut(s)	129, 147, 192, 735
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	2 cut(s)	659, 844
Hin1II	CATG	1 cut(s)	712
Hin6I	GCGC	2 cut(s)	657, 842
HinP1I	GCGC	2 cut(s)	657, 842
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	4 cut(s)	186, 358, 903, 932
HphI	GGTGA	4 cut(s)	64, 424, 550, 559
Hpy166II	GTNNAC	2 cut(s)	396, 1079
Hpy188I	TCNGA	9 cut(s)	62, 185, 357, 493, 501, 580, 682, 937, 1070
Hpy188III	TCNNGA	3 cut(s)	253, 773, 910
Hpy8I	GTNNAC	2 cut(s)	396, 1079
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	9 cut(s)	175, 250, 296, 488, 503, 664, 757, 959, 1040
HpyCH4III	ACNGT	2 cut(s)	335, 941
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	5 cut(s)	470, 597, 613, 726, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	336, 388, 448, 732, 850
HpyF3I	CTNAG	4 cut(s)	326, 377, 408, 983
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	1 cut(s)	712
HspAI	GCGC	2 cut(s)	657, 842
Kzo9I	GATC	3 cut(s)	161, 249, 894
LmnI	GCTCC	3 cut(s)	221, 358, 439
LpnPI	CCDG	4 cut(s)	18, 210, 237, 499
LweI	GCATC	2 cut(s)	237, 713
MaeI	CTAG	2 cut(s)	528, 845
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	163, 251, 896
MboI	GATC	3 cut(s)	161, 249, 894
MboII	GAAGA	9 cut(s)	31, 61, 533, 613, 637, 647, 701, 790, 1022
MhlI	GDGCHC	2 cut(s)	283, 855
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	3 cut(s)	571, 630, 1020
MluNI	TGGCCA	1 cut(s)	735
MmeI	TCCRAC	2 cut(s)	85, 480
Mox20I	TGGCCA	1 cut(s)	735
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	4 cut(s)	315, 570, 876, 992
MslI	CAYNNNNRTG	1 cut(s)	830
Msp20I	TGGCCA	1 cut(s)	735
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	5 cut(s)	336, 388, 448, 732, 850
NdeII	GATC	3 cut(s)	161, 249, 894
NheI	GCTAGC	1 cut(s)	844
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	2 cut(s)	193, 217
NmuCI	GTSAC	1 cut(s)	547
NspV	TTCGAA	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	903
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	4 cut(s)	186, 358, 903, 932
PshBI	ATTAAT	1 cut(s)	315
Psp124BI	GAGCTC	2 cut(s)	283, 855
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	193, 217
PspPI	GGNCC	4 cut(s)	146, 191, 497, 941
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	830
SacI	GAGCTC	2 cut(s)	283, 855
SaqAI	TTAA	4 cut(s)	315, 570, 876, 992
Sau3AI	GATC	3 cut(s)	161, 249, 894
Sau96I	GGNCC	4 cut(s)	146, 191, 497, 941
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	283, 855
SfaNI	GCATC	2 cut(s)	237, 713
SfcI	CTRYAG	1 cut(s)	804
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	2 cut(s)	497, 941
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	3 cut(s)	571, 630, 1020
SsiI	CCGC	2 cut(s)	208, 822
SspMI	CTAG	2 cut(s)	528, 845
SstI	GAGCTC	2 cut(s)	283, 855
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	335, 941
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	4 cut(s)	267, 361, 774, 897
TasI	AATT	3 cut(s)	571, 630, 1020
TfiI	GAWTC	4 cut(s)	186, 358, 903, 932
Tru1I	TTAA	4 cut(s)	315, 570, 876, 992
Tru9I	TTAA	4 cut(s)	315, 570, 876, 992
TscAI	CASTG	3 cut(s)	733, 808, 837
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	31, 278, 522, 534
TspGWI	ACGGA	1 cut(s)	930
TspRI	CASTG	3 cut(s)	733, 808, 837
VpaK11BI	GGWCC	2 cut(s)	497, 941
VspI	ATTAAT	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	528, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.