Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

10451496 .. 10452265

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1115500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGTTGAACCCCTATCCAATATATACATTTATTTTTCAGGATTTATTCACGGCCGGAACAGACACAAATGCAATTGCACTAGAATGGGCGTTGGCAGAGCTCATCAATCACCCAATGCTGCTCGAGAAAGCGAGGGAGGAGATCTATCGAGTCATCGGGAATAAGCGACTCGTCGGAGAACCGGACGTGCCAAATCTTCCATACCTCCAAGCCATCATAAAAGAAACATTTAGGCTACACCCACCAGCGTCTCTGGTCACAAGAAAAACTGTACAAAAAAGGGACCCGAAGATCTGGGACTGTCCATTGGACTTTTGGCCTGAAAGATTCCTACAACAAGGTACGGACAACCAGGTGAATTCAGTAGATGTGAGAGGGCAACATTTTCAACTGCTTCCTTTTGGGTCTGGGAGGAGGGTGTGCCCTGGTGTGAACTTGACCATGAAAATGCTACCGGGGGTACTTGTAGCTATGATCCAGTGCTTTGATTGGCAGGTTGTCGGGTCCAGTGCTTTGAGGAGGAAGACCTTATCCACCCGTACAATCCACCACTTTTGTTACCCCTTATGTTTTTGTCGGGTCCAGTGCTTTGAGGGGGAAGACCTTATCCACCCGTACAATCCACCACTTCCATTACCTCTGATGTTTTTCACCATAATATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

223

Amino Acids

25.58

Weight (kDa)

8.17

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	15 - 93	1e-24	Cytochrome P450
p450	PF00067	95 - 169	2.2e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AclWI	GGATC	1 cut(s)	472
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	5 cut(s)	276, 346, 465, 544, 620
AgsI	TTSAA	2 cut(s)	10, 392
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	354, 427
AluBI	AGCT	2 cut(s)	103, 473
AluI	AGCT	2 cut(s)	103, 473
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	54, 320
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	286, 507, 583
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	3 cut(s)	104, 370, 646
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	3 cut(s)	286, 507, 583
BaeGI	GKGCMC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	533, 609
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	2 cut(s)	356, 429
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	487
BglII	AGATCT	2 cut(s)	144, 294
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	356, 429, 459
Bme18I	GGWCC	3 cut(s)	286, 507, 583
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	286, 507, 583
BmiI	GGNNCC	4 cut(s)	287, 288, 508, 584
BmrFI	CCNGG	3 cut(s)	356, 429, 459
BpiI	GAAGAC	2 cut(s)	533, 609
BpuMI	CCSGG	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	427, 458
BsaWI	WCCGGW	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	481, 510, 586
BseBI	CCWGG	2 cut(s)	356, 429
BseDI	CCNNGG	2 cut(s)	427, 458
BseNI	ACTGG	3 cut(s)	481, 510, 586
BseRI	GAGGAG	3 cut(s)	155, 430, 535
BseSI	GKGCMC	1 cut(s)	428
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	56, 322
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	57, 185, 458
BslFI	GGGAC	2 cut(s)	299, 314
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	299, 314
BsnI	GGCC	2 cut(s)	56, 322
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	105, 428
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	144, 294, 477
BspANI	GGCC	2 cut(s)	56, 322
BspLI	GGNNCC	4 cut(s)	287, 288, 508, 584
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	481, 510, 586
BssECI	CCNNGG	2 cut(s)	427, 458
BssMI	GATC	3 cut(s)	144, 294, 477
Bst2UI	CCWGG	2 cut(s)	356, 429
Bst4CI	ACNGT	2 cut(s)	274, 305
BstAUI	TGTACA	1 cut(s)	274
BstKTI	GATC	3 cut(s)	147, 297, 480
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	3 cut(s)	144, 294, 477
BstMCI	CGRYCG	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	356, 429
BstSCI	CCNGG	3 cut(s)	354, 427, 457
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	2 cut(s)	533, 609
BstX2I	RGATCY	2 cut(s)	144, 294
BstYI	RGATCY	2 cut(s)	144, 294
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	56, 322
BtrI	CACGTC	1 cut(s)	190
BtsIMutI	CAGTG	3 cut(s)	488, 517, 593
BveI	ACCTGC	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	286, 507, 583
CseI	GACGC	1 cut(s)	240
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	5 cut(s)	275, 345, 464, 543, 619
CspCI	CAANNNNNGTGG	2 cut(s)	539, 574
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	6 cut(s)	56, 103, 215, 238, 322, 473
CviKI_1	RGCY	6 cut(s)	56, 103, 215, 238, 322, 473
CviQI	GTAC	5 cut(s)	275, 345, 464, 543, 619
DpnI	GATC	3 cut(s)	146, 296, 479
DpnII	GATC	3 cut(s)	144, 294, 477
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	3 cut(s)	286, 507, 583
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	354, 427
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	1 cut(s)	448
FaiI	YATR	9 cut(s)	25, 27, 205, 221, 446, 476, 571, 659, 667
FaqI	GGGAC	2 cut(s)	299, 314
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	56, 322
HapII	CCGG	3 cut(s)	57, 185, 458
HgaI	GACGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	448
HinfI	GANTC	3 cut(s)	153, 171, 330
HpaII	CCGG	3 cut(s)	57, 185, 458
HphI	GGTGA	3 cut(s)	104, 370, 646
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	179, 645
Hpy188III	TCNNGA	3 cut(s)	41, 127, 160
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	274, 305
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	74, 80
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	448
KflI	GGGWCCC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	144, 294, 477
Lsp1109I	GCAGC	1 cut(s)	108
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	259, 560
MalI	GATC	3 cut(s)	146, 296, 479
MboI	GATC	3 cut(s)	144, 294, 477
MboII	GAAGA	4 cut(s)	191, 304, 538, 614
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	2 cut(s)	144, 294
MhlI	GDGCHC	2 cut(s)	105, 428
MluCI	AATT	2 cut(s)	75, 361
MlyI	GAGTC	2 cut(s)	162, 165
MmeI	TCCRAC	1 cut(s)	157
MslI	CAYNNNNRTG	2 cut(s)	85, 449
MspI	CCGG	3 cut(s)	57, 185, 458
MspR9I	CCNGG	3 cut(s)	356, 429, 459
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	2 cut(s)	356, 429
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	3 cut(s)	144, 294, 477
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	4 cut(s)	287, 288, 508, 584
NmuCI	GTSAC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	2 cut(s)	161, 165
PpsI	GAGTC	2 cut(s)	161, 165
PpuMI	RGGWCCY	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	354, 427
PspGI	CCWGG	2 cut(s)	354, 427
PspN4I	GGNNCC	4 cut(s)	287, 288, 508, 584
PspPI	GGNCC	3 cut(s)	286, 507, 583
PspPPI	RGGWCCY	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	144, 294
RsaI	GTAC	5 cut(s)	276, 346, 465, 544, 620
RsaNI	GTAC	5 cut(s)	275, 345, 464, 543, 619
RseI	CAYNNNNRTG	2 cut(s)	85, 449
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	144, 294, 477
Sau96I	GGNCC	3 cut(s)	286, 507, 583
SchI	GAGTC	2 cut(s)	162, 165
ScrFI	CCNGG	3 cut(s)	356, 429, 459
SduI	GDGCHC	2 cut(s)	105, 428
SexAI	ACCWGGT	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	3 cut(s)	286, 507, 583
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	85, 449
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	75, 361
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	354, 427, 457
TaaI	ACNGT	2 cut(s)	274, 305
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	126, 151
TasI	AATT	2 cut(s)	75, 361
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	330
TscAI	CASTG	3 cut(s)	488, 517, 593
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	3 cut(s)	488, 517, 593
VpaK11BI	GGWCC	3 cut(s)	286, 507, 583
XapI	RAATTY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.