Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

48024999 .. 48026615

Gene Structure 1617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACATACAATGCTTCCTTTGCATTTGCACCTTATGCACATCATTGGAAGTTCACCAAGAAGCTGATCACAAACGAGCTCCTCGGCGGCCGCGGTGTAGACAACTTTTTAGCCATCCGAAACCAAGAGTACGTGAGGTTTCGAGGCTGTTGGCCAAGAAAGCCGAGACTTGCGAATCGGTCAACCTCGTCACAACGTCATCGGGCGGATGATGCGGGGAAATATTCTAGTGCTTCGCGGGCGGATGAGGCGAGGTTGGTGGTCCGGGAGGCGACCAAGATTTTCGGAGAGTTCAATTTCGGTGATTTTAATTGGATTTGGAAGAAATTGGATTTGCAGGGATTTCGGAAGAGAACCGAGGCCACACATAAGAAGTTCGATGAATTGGTGGAGAAGGTGATCGCTGAACGTGAAGAGTTGAGGAAGATACGAAGAAAGGCGACACTACGAAAAAAGAATGTCAAGAGCTTTCTTGATATTTTGCTTGATATTTTGGAGGGTGAGAGCAGTGAGAATTTGGAGGTTGAATTTTCAAGAAATCATGTTAAGGGTCTAATTACGGTGCTTCAAAAAGCAAGGGATGAGATATATCGAGTCGTTAAAAATGGACGATTAGTCGGAGAATTGGATGTTCCCAATCTTCCTTACATCCAAGCCATCATAAAAGAATCATTAAGGCTACACCCACCTTTAACTTTAGTTACAAGAAAATGCGTAGAACAATGTAAGGTTGGCAATTATGTCATTGCCAAAGACACAATGTTATTCATAAACAATTGGGCCATTGGAAGAGATCCTAAGAATTGGGAAAAACCATTAGAGTTTTGTCCTGAAAGATTCTTACAACTCGATGGGGGCGACAAGGAAAGTGCAATAGATGTTAGAGGACAACAGTTTCAATTTCTTCCATTCGGATCTGGAAGGAGGATATGTCCTGGTATAACCCTAACCATGAAAATGCTACCTGCGCTACTTGCAGCTATGATTCAATGCTTTGATTGGAAAGTTGTTGGGACAGATTACAAGAACATGGATAATGAGAATAATGTTCTTGAAATGGATGAAAAACCGGGATTCACGACTCCGAGGGCATATGATCTTGTTTGTGTTCCGGTAGCCCGCTTCAATCCCCTTAATATTCTTGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

383

Amino Acids

44.27

Weight (kDa)

9.39

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	188 - 357	1.4e-44	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	973
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	93, 238
AciI	CCGC	8 cut(s)	87, 91, 93, 206, 215, 238, 242, 1120
AclWI	GGATC	3 cut(s)	788, 922, 1139
AcoI	YGGCCR	2 cut(s)	88, 152
AcsI	RAATTY	2 cut(s)	514, 527
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	8 cut(s)	295, 527, 534, 569, 899, 989, 1055, 1126
AhdI	GACNNNNNGTC	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	4 cut(s)	64, 79, 468, 980
AluI	AGCT	4 cut(s)	64, 79, 468, 980
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	3 cut(s)	788, 922, 1139
AoxI	GGCC	4 cut(s)	88, 152, 360, 780
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	2 cut(s)	514, 527
AspLEI	GCGC	1 cut(s)	970
AspS9I	GGNCC	2 cut(s)	262, 780
AsuC2I	CCSGG	2 cut(s)	266, 1071
AsuHPI	GGTGA	4 cut(s)	46, 314, 409, 512
AvaII	GGWCC	1 cut(s)	262
BalI	TGGCCA	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	989
BccI	CCATC	3 cut(s)	122, 665, 845
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	936
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	2 cut(s)	266, 1071
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	973
BisI	GCNGC	3 cut(s)	88, 91, 978
BlsI	GCNGC	3 cut(s)	89, 92, 979
Bme1390I	CCNGG	3 cut(s)	266, 936, 1071
Bme18I	GGWCC	1 cut(s)	262
BmeRI	GACNNNNNGTC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	262, 780
BmrFI	CCNGG	3 cut(s)	266, 936, 1071
BmsI	GCATC	1 cut(s)	202
BpuMI	CCSGG	2 cut(s)	266, 1071
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	82, 91, 357, 1085
BsaWI	WCCGGW	1 cut(s)	1111
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	4 cut(s)	82, 91, 357, 1085
BseGI	GGATG	7 cut(s)	114, 214, 250, 586, 634, 648, 1066
BseMI	GCAATG	1 cut(s)	744
BseRI	GAGGAG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	989
Bsh1236I	CGCG	2 cut(s)	93, 238
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	90, 154, 362, 782
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	265, 1070, 1112
BslFI	GGGAC	1 cut(s)	1027
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	1027
BsnI	GGCC	4 cut(s)	90, 154, 362, 782
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
BspACI	CCGC	8 cut(s)	87, 91, 93, 206, 215, 238, 242, 1120
BspANI	GGCC	4 cut(s)	90, 154, 362, 782
BspFNI	CGCG	2 cut(s)	93, 238
BspMI	ACCTGC	1 cut(s)	973
BspPI	GGATC	3 cut(s)	788, 922, 1139
BsrDI	GCAATG	1 cut(s)	744
BssECI	CCNNGG	4 cut(s)	82, 91, 357, 1085
BssMI	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	2 cut(s)	562, 894
Bst6I	CTCTTC	3 cut(s)	344, 408, 784
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	240, 1120
BstDEI	CTNAG	1 cut(s)	798
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	7 cut(s)	114, 214, 250, 586, 634, 648, 1066
BstFNI	CGCG	2 cut(s)	93, 238
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	6 cut(s)	69, 402, 796, 917, 1099, 1147
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 35, 160, 212, 239, 248, 967, 974
BstNI	CCWGG	1 cut(s)	936
BstSCI	CCNGG	3 cut(s)	264, 934, 1069
BstUI	CGCG	2 cut(s)	93, 238
BstV1I	GCAGC	1 cut(s)	989
BstX2I	RGATCY	2 cut(s)	793, 914
BstYI	RGATCY	2 cut(s)	793, 914
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	90, 154, 362, 782
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	7 cut(s)	114, 214, 250, 586, 634, 648, 1066
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	2 cut(s)	240, 1120
CciNI	GCGGCCGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	970
Cfr13I	GGNCC	2 cut(s)	262, 780
Cfr42I	CCGCGG	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	542, 952, 1030
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	798
DpnI	GATC	6 cut(s)	68, 401, 795, 916, 1098, 1146
DpnII	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
DriI	GACNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	2 cut(s)	88, 152
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	3 cut(s)	344, 408, 784
Eam1105I	GACNNNNNGTC	1 cut(s)	614
EarI	CTCTTC	3 cut(s)	344, 408, 784
EciI	GGCGGA	2 cut(s)	221, 257
Ecl136II	GAGCTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	3 cut(s)	545, 955, 1033
FaqI	GGGAC	1 cut(s)	1027
FatI	CATG	3 cut(s)	541, 951, 1029
FauI	CCCGC	3 cut(s)	208, 231, 1127
FauNDI	CATATG	1 cut(s)	1093
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	88, 91, 978
FokI	GGATG	7 cut(s)	101, 221, 257, 593, 635, 641, 1073
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	88, 91, 978
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	3 cut(s)	88, 91, 978
HaeIII	GGCC	4 cut(s)	90, 154, 362, 782
HapII	CCGG	3 cut(s)	265, 1070, 1112
HhaI	GCGC	1 cut(s)	970
Hin1II	CATG	3 cut(s)	545, 955, 1033
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	7 cut(s)	175, 594, 668, 837, 985, 1074, 1081
HpaII	CCGG	3 cut(s)	265, 1070, 1112
HphI	GGTGA	4 cut(s)	46, 314, 409, 512
Hpy166II	GTNNAC	3 cut(s)	54, 100, 183
Hpy188I	TCNGA	6 cut(s)	119, 287, 348, 620, 914, 1086
Hpy188III	TCNNGA	8 cut(s)	463, 473, 534, 830, 918, 1052, 1078, 1142
Hpy8I	GTNNAC	3 cut(s)	54, 100, 183
HpyAV	CCTTC	2 cut(s)	388, 915
HpyCH4III	ACNGT	2 cut(s)	562, 894
HpyCH4IV	ACGT	3 cut(s)	132, 196, 409
HpyCH4V	TGCA	6 cut(s)	23, 29, 38, 337, 872, 977
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 35, 160, 212, 239, 248, 967, 974
HpyF3I	CTNAG	1 cut(s)	798
HpySE526I	ACGT	3 cut(s)	132, 196, 409
Hsp92II	CATG	3 cut(s)	545, 955, 1033
HspAI	GCGC	1 cut(s)	968
Ksp22I	TGATCA	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	9 cut(s)	278, 323, 843, 903, 921, 948, 978, 1083, 1125
Lsp1109I	GCAGC	1 cut(s)	989
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	132, 196, 409
MaeIII	GTNAC	2 cut(s)	189, 700
MalI	GATC	6 cut(s)	68, 401, 795, 916, 1098, 1146
MboI	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
MboII	GAAGA	8 cut(s)	334, 361, 425, 436, 444, 632, 801, 896
MfeI	CAATTG	1 cut(s)	775
MflI	RGATCY	2 cut(s)	793, 914
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	154
MluNI	TGGCCA	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	603, 1075
MmeI	TCCRAC	1 cut(s)	598
Mox20I	TGGCCA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	154
MseI	TTAA	6 cut(s)	309, 546, 600, 674, 692, 1134
MslI	CAYNNNNRTG	1 cut(s)	956
Msp20I	TGGCCA	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	3 cut(s)	265, 1070, 1112
MspR9I	CCNGG	3 cut(s)	266, 936, 1071
MunI	CAATTG	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	2 cut(s)	93, 238
MwoI	GCNNNNNNNGC	8 cut(s)	20, 35, 160, 212, 239, 248, 967, 974
NciI	CCSGG	2 cut(s)	266, 1071
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
NlaIII	CATG	3 cut(s)	545, 955, 1033
NmeAIII	GCCGAG	2 cut(s)	63, 189
NmuCI	GTSAC	1 cut(s)	189
NotI	GCGGCCGC	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PfeI	GAWTC	5 cut(s)	175, 668, 837, 985, 1074
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	89, 92, 979
PleI	GAGTC	2 cut(s)	602, 1075
PpsI	GAGTC	2 cut(s)	602, 1075
Ppu21I	YACGTR	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspPI	GGNCC	2 cut(s)	262, 780
PsuI	RGATCY	2 cut(s)	793, 914
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	956
SacI	GAGCTC	1 cut(s)	81
SacII	CCGCGG	1 cut(s)	94
SaqAI	TTAA	6 cut(s)	309, 546, 600, 674, 692, 1134
SatI	GCNGC	3 cut(s)	88, 91, 978
Sau3AI	GATC	6 cut(s)	66, 399, 793, 914, 1096, 1144
Sau96I	GGNCC	2 cut(s)	262, 780
SchI	GAGTC	2 cut(s)	603, 1075
ScrFI	CCNGG	3 cut(s)	266, 936, 1071
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	956
SsiI	CCGC	8 cut(s)	87, 91, 93, 206, 215, 238, 242, 1120
SspI	AATATT	2 cut(s)	224, 1138
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	264, 934, 1069
TaaI	ACNGT	2 cut(s)	562, 894
TaiI	ACGT	3 cut(s)	135, 199, 412
TaqI	TCGA	4 cut(s)	142, 378, 592, 849
TaqII	GACCGA	1 cut(s)	168
TauI	GCSGC	2 cut(s)	90, 93
TfiI	GAWTC	5 cut(s)	175, 668, 837, 985, 1074
Tru1I	TTAA	6 cut(s)	309, 546, 600, 674, 692, 1134
Tru9I	TTAA	6 cut(s)	309, 546, 600, 674, 692, 1134
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	4 cut(s)	396, 757, 968, 1077
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	2 cut(s)	514, 527
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.