Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Reverse (-)

68767467 .. 68768562

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035568

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGATAATGGATCATTGGGTTTAGATGAAGCTGTGTCACCTGATGAAACTGGTATAGATCCAATTGCCATTTTAATGGAATGGACACTAGCAGAGCTAATTAATAACCCACAGGTGCTCAAGAATGCAAGAGAACAAATCGATCAGGTTGTTAAAAGTGAACGGTTAGTTGGAGAATTGGATAGTCCAAATCTTCCATACATCCAAGCCATCATAAAAGAAACATATAGGCTACACCCACCATTGTCTTTGCTCAGGAAAAGATGTACAGAACAATGTCAGGTTGTTGGAACAGATCGTAAGATGAACAATACTAATCTTCTTGATATGGATGAAGGGCCTGGACTATCAACTCCAAGGGCCCATGATCTTGTTTGTGTTCCGATAACTCGATGCAGCTCGCCTAGTATTATTGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

4.66

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 97	5.5e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	19, 53
AfaI	GTAC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	3 cut(s)	32, 97, 399
AluI	AGCT	3 cut(s)	32, 97, 399
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	19, 53
AoxI	GGCC	2 cut(s)	338, 360
ApaI	GGGCCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	396
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	3 cut(s)	338, 360, 361
AsuHPI	GGTGA	1 cut(s)	30
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	2 cut(s)	89, 405
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	342
BmgT120I	GGNCC	3 cut(s)	338, 360, 361
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	201, 337
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	2 cut(s)	340, 362
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	340, 362
Bsp120I	GGGCCC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	120, 364
Bsp1407I	TGTACA	1 cut(s)	266
Bsp143I	GATC	5 cut(s)	11, 58, 142, 295, 367
BspANI	GGCC	2 cut(s)	340, 362
BspCNI	CTCAG	1 cut(s)	267
BspDI	ATCGAT	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	19, 53
BsrGI	TGTACA	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	5 cut(s)	11, 58, 142, 295, 367
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	201, 337
BstKTI	GATC	5 cut(s)	14, 61, 145, 298, 370
BstMBI	GATC	5 cut(s)	11, 58, 142, 295, 367
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	340, 362
BsuTUI	ATCGAT	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	201, 337
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	338, 360, 361
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	7 cut(s)	32, 97, 209, 232, 340, 362, 399
CviKI_1	RGCY	7 cut(s)	32, 97, 209, 232, 340, 362, 399
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	5 cut(s)	13, 60, 144, 297, 369
DpnII	GATC	5 cut(s)	11, 58, 142, 295, 367
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	364
EcoO109I	RGGNCCY	2 cut(s)	338, 360
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	368
FaiI	YATR	8 cut(s)	56, 199, 215, 226, 228, 329, 366, 421
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	2 cut(s)	188, 344
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	2 cut(s)	89, 405
GluI	GCNGC	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	340, 362
Hin1II	CATG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	3 cut(s)	121, 256, 323
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	128, 396
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	5 cut(s)	11, 58, 142, 295, 367
LpnPI	CCDG	8 cut(s)	36, 54, 98, 131, 241, 266, 327, 354
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	2 cut(s)	89, 405
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	5 cut(s)	13, 60, 144, 297, 369
MboI	GATC	5 cut(s)	11, 58, 142, 295, 367
MboII	GAAGA	2 cut(s)	185, 311
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	120, 364
MluCI	AATT	3 cut(s)	63, 99, 176
MmeI	TCCRAC	2 cut(s)	151, 268
MseI	TTAA	3 cut(s)	74, 102, 153
MslI	CAYNNNNRTG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	342
NdeII	GATC	5 cut(s)	11, 58, 142, 295, 367
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	398
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	362
PspOMI	GGGCCC	1 cut(s)	360
PspPI	GGNCC	3 cut(s)	338, 360, 361
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	74, 102, 153
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	5 cut(s)	11, 58, 142, 295, 367
Sau96I	GGNCC	3 cut(s)	338, 360, 361
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	120, 364
SetI	ASST	7 cut(s)	34, 43, 99, 117, 150, 285, 401
SfaNI	GCATC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	63, 99, 176
SspMI	CTAG	2 cut(s)	89, 405
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	141, 391
TasI	AATT	3 cut(s)	63, 99, 176
TatI	WGTACW	1 cut(s)	266
Tru1I	TTAA	3 cut(s)	74, 102, 153
Tru9I	TTAA	3 cut(s)	74, 102, 153
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	42, 60, 320, 348
VspI	ATTAAT	1 cut(s)	102
XspI	CTAG	2 cut(s)	89, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.