Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011355.1

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

8918 .. 9862

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011355.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggcacttgagcttgtcctcctcattctcttccttgttttggccatctccataatctcgagaatgttgtaccatgatcaccttcctccaagcccattagccttgcccatcatcggccacttgcacctcctcggccctctcatccaccgctccctccacaacctctcattacgctttggtcccctattctctcttcgcctcggctctgtcccatgcattgttgtaacctcaccggaacttgcagaagagtttctcaagacgcacgagctcaccttcatgtcccggccagagttaaccgcgatccaaaccctgacctacaactcttcgtttatatttaaacccgctggaccgtactggaaattcatgaggaagctgaccatgaccgagctctttaacagtcatagcgcagacaagttcctctcgattcgcgaccaagagtgcatgaggctccttaggttgttggccaagaaagcccagagttatgaagctgtggatcttagtgaggagatacggaggctatgcttcggtataatcgggcagatgattgcggggaaaagtgccatgactgtcccggctagggaagcctggttgatggtaagggaggcaacggcgattgcgggagagatgaatttctgtgattttaattgggtttggaagaagttgaatttagatggatataggaacaaaatggaaagcttgcaaaggagggttgatgaacgtttggaggctttcattgtggagcgtgaagaattgaggaagaagcataagaaaattgatggaggaggaagcgaagttggccaaagggaggtggattttcttgatgttttgcttgatctattggacgctgagagtagtgatgctgcagaggttggattttcaaaacttcatattaaggctctacttgcggtacgtaactactatttctttttcatccccttcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

314

Amino Acids

36.03

Weight (kDa)

7.74

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	2 cut(s)	299, 429
AciI	CCGC	6 cut(s)	148, 297, 342, 548, 617, 905
AclI	AACGTT	1 cut(s)	718
AclWI	GGATC	2 cut(s)	295, 501
AcoI	YGGCCR	5 cut(s)	42, 115, 284, 462, 796
AcsI	RAATTY	3 cut(s)	359, 628, 664
AfaI	GTAC	3 cut(s)	71, 353, 909
AfiI	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 805
AgsI	TTSAA	2 cut(s)	664, 879
AjnI	CCWGG	1 cut(s)	584
AluBI	AGCT	6 cut(s)	13, 268, 373, 388, 488, 696
AluI	AGCT	6 cut(s)	13, 268, 373, 388, 488, 696
Alw21I	GWGCWC	2 cut(s)	270, 390
AlwI	GGATC	2 cut(s)	295, 501
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	6 cut(s)	42, 115, 133, 284, 462, 796
ApeKI	GCWGC	1 cut(s)	860
ApoI	RAATTY	3 cut(s)	359, 628, 664
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	134, 179, 347
AsuC2I	CCSGG	2 cut(s)	283, 572
AsuHPI	GGTGA	3 cut(s)	71, 222, 262
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	179, 347
AxyI	CCTNAGG	1 cut(s)	452
BalI	TGGCCA	3 cut(s)	44, 464, 798
BanII	GRGCYC	2 cut(s)	270, 390
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	270, 390
BbvI	GCAGC	1 cut(s)	847
BccI	CCATC	5 cut(s)	53, 116, 586, 665, 770
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	1 cut(s)	586
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	283, 572
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	861
BisI	GCNGC	1 cut(s)	861
BlsI	GCNGC	1 cut(s)	862
Bme1390I	CCNGG	3 cut(s)	283, 572, 586
Bme18I	GGWCC	2 cut(s)	179, 347
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	134, 179, 347
BmiI	GGNNCC	2 cut(s)	181, 449
BmrFI	CCNGG	3 cut(s)	283, 572, 586
BmsI	GCATC	1 cut(s)	847
BpuEI	CTTGAG	2 cut(s)	29, 239
BpuMI	CCSGG	2 cut(s)	283, 572
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	130, 199
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 805
Bse1I	ACTGG	1 cut(s)	359
Bse21I	CCTNAGG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	2 cut(s)	130, 199
BseGI	GGATG	2 cut(s)	141, 930
BseLI	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 805
BseMII	CTCAG	1 cut(s)	837
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	4 cut(s)	11, 119, 518, 795
BseXI	GCAGC	1 cut(s)	847
Bsh1236I	CGCG	2 cut(s)	299, 429
BshFI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 798
BsiHKAI	GWGCWC	2 cut(s)	270, 390
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	233, 283, 572
BslFI	GGGAC	4 cut(s)	165, 194, 265, 554
BslI	CCNNNNNNNGG	4 cut(s)	40, 113, 577, 805
BsmFI	GGGAC	4 cut(s)	165, 194, 265, 554
BsnI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 798
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	270, 390
Bsp143I	GATC	4 cut(s)	76, 300, 493, 832
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	6 cut(s)	148, 297, 342, 548, 617, 905
BspANI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 798
BspCNI	CTCAG	1 cut(s)	838
BspFNI	CGCG	2 cut(s)	299, 429
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	181, 449
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	2 cut(s)	295, 501
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	130, 199
BssMI	GATC	4 cut(s)	76, 300, 493, 832
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	351, 398, 568
Bst6I	CTCTTC	4 cut(s)	35, 198, 240, 328
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	3 cut(s)	452, 497, 846
BstF5I	GGATG	2 cut(s)	141, 930
BstFNI	CGCG	2 cut(s)	299, 429
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	4 cut(s)	79, 303, 496, 835
BstMBI	GATC	4 cut(s)	76, 300, 493, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 581, 795, 902
BstNI	CCWGG	1 cut(s)	586
BstSCI	CCNGG	3 cut(s)	281, 570, 584
BstSFI	CTRYAG	1 cut(s)	861
BstSNI	TACGTA	1 cut(s)	911
BstUI	CGCG	2 cut(s)	299, 429
BstV1I	GCAGC	1 cut(s)	847
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
Bsu36I	CCTNAGG	1 cut(s)	452
BsuRI	GGCC	6 cut(s)	44, 117, 135, 286, 464, 798
BtsCI	GGATG	2 cut(s)	141, 930
BtuMI	TCGCGA	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	134, 179, 347
CseI	GACGC	2 cut(s)	268, 851
Csp6I	GTAC	3 cut(s)	70, 352, 908
CviAII	CATG	7 cut(s)	74, 213, 277, 364, 379, 442, 562
CviQI	GTAC	3 cut(s)	70, 352, 908
DdeI	CTNAG	3 cut(s)	452, 497, 846
DpnI	GATC	4 cut(s)	78, 302, 495, 834
DpnII	GATC	4 cut(s)	76, 300, 493, 832
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	5 cut(s)	42, 115, 284, 462, 796
Eam1104I	CTCTTC	4 cut(s)	35, 198, 240, 328
EarI	CTCTTC	4 cut(s)	35, 198, 240, 328
Ecl136II	GAGCTC	2 cut(s)	268, 388
Eco105I	TACGTA	1 cut(s)	911
Eco24I	GRGCYC	2 cut(s)	270, 390
Eco47I	GGWCC	2 cut(s)	179, 347
Eco53kI	GAGCTC	2 cut(s)	268, 388
Eco81I	CCTNAGG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	58
EcoICRI	GAGCTC	2 cut(s)	268, 388
EcoRII	CCWGG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	2 cut(s)	270, 390
FaeI	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
FaqI	GGGAC	4 cut(s)	165, 194, 265, 554
FatI	CATG	7 cut(s)	73, 212, 276, 363, 378, 441, 561
FauI	CCCGC	3 cut(s)	349, 541, 610
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	861
FokI	GGATG	2 cut(s)	128, 917
FriOI	GRGCYC	2 cut(s)	270, 390
Fsp4HI	GCNGC	1 cut(s)	861
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	861
HaeIII	GGCC	6 cut(s)	44, 117, 135, 286, 464, 798
HapII	CCGG	3 cut(s)	233, 283, 572
HgaI	GACGC	2 cut(s)	268, 851
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	1 cut(s)	424
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	233, 283, 572
HphI	GGTGA	3 cut(s)	71, 222, 262
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188III	TCNNGA	7 cut(s)	58, 60, 256, 364, 421, 428, 818
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	92, 283
HpyCH4III	ACNGT	3 cut(s)	351, 398, 568
HpyCH4IV	ACGT	2 cut(s)	718, 910
HpyCH4V	TGCA	6 cut(s)	124, 216, 242, 441, 700, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 581, 795, 902
HpyF3I	CTNAG	3 cut(s)	452, 497, 846
HpySE526I	ACGT	2 cut(s)	718, 910
Hsp92II	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
HspAI	GCGC	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	4 cut(s)	76, 300, 493, 832
LmnI	GCTCC	3 cut(s)	155, 453, 739
Lsp1109I	GCAGC	1 cut(s)	847
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	2 cut(s)	718, 910
MaeIII	GTNAC	2 cut(s)	223, 911
MalI	GATC	4 cut(s)	78, 302, 495, 834
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	4 cut(s)	76, 300, 493, 832
MboII	GAAGA	7 cut(s)	22, 185, 257, 315, 667, 758, 769
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	270, 390
MlsI	TGGCCA	3 cut(s)	44, 464, 798
MluCI	AATT	6 cut(s)	359, 628, 643, 664, 749, 771
MluNI	TGGCCA	3 cut(s)	44, 464, 798
MmeI	TCCRAC	1 cut(s)	850
Mox20I	TGGCCA	3 cut(s)	44, 464, 798
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	3 cut(s)	44, 464, 798
MseI	TTAA	6 cut(s)	293, 336, 393, 642, 891, 943
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	3 cut(s)	44, 464, 798
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	3 cut(s)	233, 283, 572
MspR9I	CCNGG	3 cut(s)	283, 572, 586
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	2 cut(s)	299, 429
MwoI	GCNNNNNNNGC	4 cut(s)	470, 581, 795, 902
NciI	CCSGG	2 cut(s)	283, 572
NdeII	GATC	4 cut(s)	76, 300, 493, 832
NlaIII	CATG	7 cut(s)	77, 216, 280, 367, 382, 445, 565
NlaIV	GGNNCC	2 cut(s)	181, 449
NmeAIII	GCCGAG	2 cut(s)	111, 180
NruI	TCGCGA	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	58
PagI	TCATGA	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	862
Ppu21I	YACGTR	1 cut(s)	911
Psp124BI	GAGCTC	2 cut(s)	270, 390
Psp1406I	AACGTT	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	181, 449
PspPI	GGNCC	3 cut(s)	134, 179, 347
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	493
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	3 cut(s)	71, 353, 909
RsaNI	GTAC	3 cut(s)	70, 352, 908
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	2 cut(s)	270, 390
SaqAI	TTAA	6 cut(s)	293, 336, 393, 642, 891, 943
SatI	GCNGC	1 cut(s)	861
Sau3AI	GATC	4 cut(s)	76, 300, 493, 832
Sau96I	GGNCC	3 cut(s)	134, 179, 347
ScrFI	CCNGG	3 cut(s)	283, 572, 586
SduI	GDGCHC	2 cut(s)	270, 390
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	861
Sfr274I	CTCGAG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	179, 347
SlaI	CTCGAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	3 cut(s)	8, 58, 254
SmoI	CTYRAG	3 cut(s)	8, 58, 254
SnaBI	TACGTA	1 cut(s)	911
Sse9I	AATT	6 cut(s)	359, 628, 643, 664, 749, 771
SsiI	CCGC	6 cut(s)	148, 297, 342, 548, 617, 905
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	2 cut(s)	270, 390
StyD4I	CCNGG	3 cut(s)	281, 570, 584
TaaI	ACNGT	3 cut(s)	351, 398, 568
TaiI	ACGT	2 cut(s)	721, 913
TaqI	TCGA	2 cut(s)	59, 422
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	6 cut(s)	359, 628, 643, 664, 749, 771
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	6 cut(s)	293, 336, 393, 642, 891, 943
Tru9I	TTAA	6 cut(s)	293, 336, 393, 642, 891, 943
TseI	GCWGC	1 cut(s)	860
TspDTI	ATGAA	8 cut(s)	265, 352, 498, 641, 721, 729, 875, 919
TspGWI	ACGGA	1 cut(s)	526
VpaK11BI	GGWCC	2 cut(s)	179, 347
XapI	RAATTY	3 cut(s)	359, 628, 664
XhoI	CTCGAG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.