Rh5DG439100

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
70286813 .. 70295950
9138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG439100.1

Sequence Viewer

Length: 1092 bp
ATGGCACTTGAGCTAGTCTTCCTCGTTCTCTTCCTTGTTTTGACCATCTCCATAATCTCGAGAATGTTGTACCATGATCACCTTCCTCCAAGCCCCTTAGCCTTGCCCATCATCGGCCACTTGCACCTCCTTAGCCCTGTCACCCACCGCTCCCTCCACAGCCTCGCATTACGGTTTGGTCCCTTATTCTCTCTTCGCCTCGGCTCTGTCCCATGCATCGTTGTAACCTCAGCGGAGCTTGCAAAAGAGTTCCTCAAAACAAACGAGAACGCCTTCATAAACCGGCCTCAGTCAATTGCAATCAATCGTATCACATACAACGCTTCGTTTGTTTTTGCACCCTATGGACCGTACTGGAAGTTCATCAGGAAGCTGAGCATGAACGAGCTCCTAAGCAGTCGTAGCGTAGACAAGTTTCTTTCTATTCGAAACCAAGAGTGCCTTGGGCTCCTGAGGTTGTTGGCCAAGAAGGCGGAGAATTACGAAGATGTGAATCTCAGTGAGGAGCTACGGAGGCTGGGCCACAATGTGATGGGGAAGATGATGCTGGGGAAACATGCCAGTGATTCTTTCCGGGCAGAGGAGGCGAGGTTGTTGGTGCGGGAAGCCACAGAGATGTTAGGGGAGTTGAATTTGTGTGATTTTAATTGGGTTTGGAAGAAGTTGGATTTGCAAGGATTTGGGAATAAAATCGAGAACACGCATAGGAGGGTTGATAATTGGTTAGACAAGGTCATTATAGAACGAGAAGAACTGAGGAAGGAACGTAAGAAAACCAATGGAGGAGGTAATGTTGAAGAGGAGAAGGTCAAGGATTTTCTTGACATTTTACTTGATTTGTTGGACGACGAGAGCCGTGAGACTGCGGAGCTTGGATTTTCAAGAGTTCACATTAAGGCACTAATTGCGGATTTATCCGCAGCAGCTATGATTCAGTGCTTTGATTGGAAGGTTGTTGGAACAGATCGTAAGATGAACAATACTAATGTTCTTGATATGGATGAAGGGCCTGGACTAACAAATCCAAGGGCCCATGATCTTGTTTGTGTTCCGATAACTCGATTCAGCCCACCTAGTATTATTGATTCATGA

Protein Analysis

363

Amino Acids

41.31

Weight (kDa)

6.84

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 29 - 309 2.3e-29 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 408
AciI CCGC 7 cut(s) 148, 233, 473, 601, 866, 908, 918
AcoI YGGCCR 2 cut(s) 115, 462
AcsI RAATTY 1 cut(s) 631
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 2 cut(s) 71, 353
AfiI CCNNNNNNNGG 2 cut(s) 113, 580
AgsI TTSAA 3 cut(s) 631, 797, 882
AjnI CCWGG 1 cut(s) 1009
AluBI AGCT 7 cut(s) 13, 238, 373, 388, 508, 871, 926
AluI AGCT 7 cut(s) 13, 238, 373, 388, 508, 871, 926
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 854
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 6 cut(s) 115, 284, 462, 520, 1007, 1029
ApaI GGGCCC 1 cut(s) 1033
ApeKI GCWGC 2 cut(s) 920, 923
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 6 cut(s) 179, 347, 520, 1007, 1029, 1030
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 71, 133
AsuII TTCGAA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 2 cut(s) 179, 347
AxyI CCTNAGG 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 3 cut(s) 390, 450, 1033
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 932, 935
BccI CCATC 3 cut(s) 53, 116, 526
BceAI ACGGC 1 cut(s) 840
BciT130I CCWGG 1 cut(s) 1011
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 2 cut(s) 14, 1074
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 2 cut(s) 921, 924
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 2 cut(s) 922, 925
Bme1390I CCNGG 2 cut(s) 575, 1011
Bme18I GGWCC 2 cut(s) 179, 347
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 6 cut(s) 179, 347, 520, 1007, 1029, 1030
BmiI GGNNCC 3 cut(s) 181, 449, 1031
BmrFI CCNGG 2 cut(s) 575, 1011
BmsI GCATC 2 cut(s) 225, 534
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 4 cut(s) 97, 131, 229, 392
Bpu1102I GCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 199, 442, 1025
BsaXI ACNNNNNCTCC 4 cut(s) 575, 605, 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 580
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 359, 561
Bse21I CCTNAGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 1 cut(s) 1011
BseDI CCNNGG 3 cut(s) 199, 442, 1025
BseGI GGATG 1 cut(s) 1006
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 2 cut(s) 113, 580
BseMII CTCAG 6 cut(s) 243, 302, 365, 443, 511, 746
BseNI ACTGG 2 cut(s) 359, 561
BseRI GAGGAG 4 cut(s) 518, 596, 798, 815
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 2 cut(s) 932, 935
BseYI CCCAGC 2 cut(s) 517, 547
BshFI GGCC 6 cut(s) 117, 286, 464, 522, 1009, 1031
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 2 cut(s) 283, 574
BslFI GGGAC 2 cut(s) 165, 194
BslI CCNNNNNNNGG 2 cut(s) 113, 580
BsmAI GTCTC 1 cut(s) 854
BsmFI GGGAC 2 cut(s) 165, 194
BsnI GGCC 6 cut(s) 117, 286, 464, 522, 1009, 1031
BsoBI CYCGRG 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 427
Bsp120I GGGCCC 1 cut(s) 1029
Bsp1286I GDGCHC 3 cut(s) 390, 450, 1033
Bsp143I GATC 3 cut(s) 76, 964, 1036
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 7 cut(s) 148, 233, 473, 601, 866, 908, 918
BspANI GGCC 6 cut(s) 117, 286, 464, 522, 1009, 1031
BspCNI CTCAG 6 cut(s) 242, 301, 366, 444, 510, 747
BspHI TCATGA 1 cut(s) 1088
BspLI GGNNCC 3 cut(s) 181, 449, 1031
BspT104I TTCGAA 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 2 cut(s) 359, 561
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 3 cut(s) 199, 442, 1025
BssMI GATC 3 cut(s) 76, 964, 1036
BssT1I CCWWGG 2 cut(s) 442, 1025
Bst2UI CCWGG 1 cut(s) 1011
Bst4CI ACNGT 2 cut(s) 174, 351
Bst6I CTCTTC 3 cut(s) 35, 198, 792
BstAPI GCANNNNNTGC 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 9 cut(s) 97, 131, 229, 288, 374, 392, 452, 497, 755
BstF5I GGATG 1 cut(s) 1006
BstKTI GATC 3 cut(s) 79, 967, 1039
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 3 cut(s) 76, 964, 1036
BstMWI GCNNNNNNNGC 6 cut(s) 239, 402, 470, 514, 584, 905
BstNI CCWGG 1 cut(s) 1011
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 573, 1009
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 2 cut(s) 932, 935
BstV2I GAAGAC 1 cut(s) 10
Bsu36I CCTNAGG 1 cut(s) 452
BsuRI GGCC 6 cut(s) 117, 286, 464, 522, 1009, 1031
BtsCI GGATG 1 cut(s) 1006
BtsIMutI CAGTG 3 cut(s) 505, 568, 941
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 1088
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 6 cut(s) 179, 347, 520, 1007, 1029, 1030
Csp6I GTAC 2 cut(s) 70, 352
CviAII CATG 6 cut(s) 74, 213, 379, 557, 1034, 1089
CviQI GTAC 2 cut(s) 70, 352
DdeI CTNAG 9 cut(s) 97, 131, 229, 288, 374, 392, 452, 497, 755
DpnI GATC 3 cut(s) 78, 966, 1038
DpnII GATC 3 cut(s) 76, 964, 1036
DraIII CACNNNGTG 1 cut(s) 529
EaeI YGGCCR 2 cut(s) 115, 462
Eam1104I CTCTTC 3 cut(s) 35, 198, 792
EarI CTCTTC 3 cut(s) 35, 198, 792
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 442, 1025
Eco24I GRGCYC 3 cut(s) 390, 450, 1033
Eco47I GGWCC 2 cut(s) 179, 347
Eco53kI GAGCTC 1 cut(s) 388
Eco81I CCTNAGG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 2 cut(s) 1007, 1029
EcoRII CCWGG 1 cut(s) 1009
EcoT14I CCWWGG 2 cut(s) 442, 1025
EcoT22I ATGCAT 1 cut(s) 218
EcoT38I GRGCYC 3 cut(s) 390, 450, 1033
ErhI CCWWGG 2 cut(s) 442, 1025
FaeI CATG 6 cut(s) 77, 216, 382, 560, 1037, 1092
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 165, 194
FatI CATG 6 cut(s) 73, 212, 378, 556, 1033, 1088
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 921, 924
FokI GGATG 1 cut(s) 1013
FriOI GRGCYC 3 cut(s) 390, 450, 1033
Fsp4HI GCNGC 2 cut(s) 921, 924
FspBI CTAG 2 cut(s) 14, 1074
GluI GCNGC 2 cut(s) 921, 924
GsaI CCCAGC 2 cut(s) 521, 551
HaeIII GGCC 6 cut(s) 117, 286, 464, 522, 1009, 1031
HapII CCGG 2 cut(s) 283, 574
Hin1II CATG 6 cut(s) 77, 216, 382, 560, 1037, 1092
HinfI GANTC 5 cut(s) 493, 566, 931, 1062, 1085
HpaII CCGG 2 cut(s) 283, 574
HphI GGTGA 2 cut(s) 71, 133
Hpy166II GTNNAC 2 cut(s) 409, 889
Hpy188I TCNGA 1 cut(s) 1053
Hpy188III TCNNGA 9 cut(s) 58, 60, 367, 451, 694, 821, 882, 992, 1089
Hpy8I GTNNAC 2 cut(s) 409, 889
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 7 cut(s) 92, 283, 463, 754, 799, 943, 998
HpyCH4III ACNGT 2 cut(s) 174, 351
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 6 cut(s) 124, 216, 242, 299, 338, 673
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 402, 470, 514, 584, 905
HpyF3I CTNAG 9 cut(s) 97, 131, 229, 288, 374, 392, 452, 497, 755
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 6 cut(s) 77, 216, 382, 560, 1037, 1092
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 964, 1036
LmnI GCTCC 6 cut(s) 155, 235, 393, 453, 505, 868
Lsp1109I GCAGC 2 cut(s) 932, 935
LweI GCATC 2 cut(s) 225, 534
MaeI CTAG 2 cut(s) 14, 1074
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 139, 223
MalI GATC 3 cut(s) 78, 966, 1038
MbiI CCGCTC 1 cut(s) 150
MboI GATC 3 cut(s) 76, 964, 1036
MboII GAAGA 8 cut(s) 10, 22, 185, 497, 550, 670, 761, 809
MfeI CAATTG 1 cut(s) 294
MhlI GDGCHC 3 cut(s) 390, 450, 1033
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 6 cut(s) 294, 478, 631, 646, 718, 903
MluNI TGGCCA 1 cut(s) 464
MmeI TCCRAC 3 cut(s) 645, 822, 937
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 645, 894
MslI CAYNNNNRTG 2 cut(s) 561, 614
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 2 cut(s) 283, 574
MspR9I CCNGG 2 cut(s) 575, 1011
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 1011
MwoI GCNNNNNNNGC 6 cut(s) 239, 402, 470, 514, 584, 905
NciI CCSGG 1 cut(s) 575
NdeII GATC 3 cut(s) 76, 964, 1036
NlaIII CATG 6 cut(s) 77, 216, 382, 560, 1037, 1092
NlaIV GGNNCC 3 cut(s) 181, 449, 1031
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 58
PagI TCATGA 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 5 cut(s) 493, 566, 931, 1062, 1085
PflFI GACNNNGTC 1 cut(s) 731
PkrI GCNGC 2 cut(s) 922, 925
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 1009
PspFI CCCAGC 2 cut(s) 517, 547
PspGI CCWGG 1 cut(s) 1009
PspN4I GGNNCC 3 cut(s) 181, 449, 1031
PspOMI GGGCCC 1 cut(s) 1029
PspPI GGNCC 6 cut(s) 179, 347, 520, 1007, 1029, 1030
PsrI GAACNNNNNNTAC 2 cut(s) 344, 376
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 2 cut(s) 71, 353
RsaNI GTAC 2 cut(s) 70, 352
RseI CAYNNNNRTG 2 cut(s) 561, 614
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 2 cut(s) 645, 894
SatI GCNGC 2 cut(s) 921, 924
Sau3AI GATC 3 cut(s) 76, 964, 1036
Sau96I GGNCC 6 cut(s) 179, 347, 520, 1007, 1029, 1030
ScrFI CCNGG 2 cut(s) 575, 1011
SduI GDGCHC 3 cut(s) 390, 450, 1033
SfaNI GCATC 2 cut(s) 225, 534
Sfr274I CTCGAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 427
SinI GGWCC 2 cut(s) 179, 347
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 561, 614
SmlI CTYRAG 2 cut(s) 8, 58
SmoI CTYRAG 2 cut(s) 8, 58
Sse9I AATT 6 cut(s) 294, 478, 631, 646, 718, 903
SsiI CCGC 7 cut(s) 148, 233, 473, 601, 866, 908, 918
SspMI CTAG 2 cut(s) 14, 1074
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 573, 1009
StyI CCWWGG 2 cut(s) 442, 1025
TaaI ACNGT 2 cut(s) 174, 351
TaiI ACGT 1 cut(s) 769
TaqI TCGA 4 cut(s) 59, 427, 693, 1060
TasI AATT 6 cut(s) 294, 478, 631, 646, 718, 903
TfiI GAWTC 5 cut(s) 493, 566, 931, 1062, 1085
Tru1I TTAA 2 cut(s) 645, 894
Tru9I TTAA 2 cut(s) 645, 894
TscAI CASTG 3 cut(s) 505, 568, 941
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 920, 923
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 6 cut(s) 265, 352, 395, 989, 1017, 1077
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 3 cut(s) 505, 568, 941
Tth111I GACNNNGTC 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 179, 347
XapI RAATTY 1 cut(s) 631
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 2 cut(s) 14, 1074
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.