Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003162.1

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Reverse (-)

650 .. 1886

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgctcttcgccgagagagctaagagttttctggctgtgaacctaagcgaagagctgccgaggctttgccacaatgtgataggccagatgatgcttgggaagtactccactgcggttgcgagcaacacagagcgggctgaggaggcgaggttagtggttagggaggcgacgaggatcttcggagagttgaacttgtgtgattttaatatggtatgcaagaaactggatttgcagggatttggaaagagaatcgaggacacgcatgtcaagtttgatgaattggtggagaaggttgttaatgaacgtgaacaactgagaattaagaacaacaaaattaagggaggagaggaggatgagaaggaggtcaaggattttctaagcatcttgcttgatatgttggaagatgagagtagtgagagcgtggaggttggattttcaagagttcacattaaggctgtaattacggatttgttcacggctagtactgacacaacagctattgcaatggagtgggcgttagcggagctcatcaatcatccaactgtgctagaaaaagcaagggaggagatcgatagcgtagttgggaatggacgaatagtggaagaatcggattgtccaagtcttccatacatccaagctatcataaaagaaacatttaggctacacccacccgtgcctatggtcgcaagaatatcggtagaagactgtaaggtcgggaaatatgttattccgaaaaatacaatgctctttgtgaacaattgggccatcggaagagatcctaaaaattgggaaaaaccgttggacttttggcctgagagattcttagaacacattggaggtgcccagacaagtggaatggatgttagaggtcaacattttcaatatcttccatttgggaccgggaggaggatgtgtcccggtatcaacttgaccatgaaaatggttcctagtttagtagcagctatgattcagtgctttgattggaagtttattcccagcaagaaaatgaacaatgatgatgttgaaatggatgaaaagcctggactgacaactccaagagcccatgatcttgtgtgttctccagtagctcgctttaattttactcaacatcttaaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

373

Amino Acids

42.37

Weight (kDa)

5.62

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	263, 710
AccB1I	GGYRCC	1 cut(s)	839
AccBSI	CCGCTC	1 cut(s)	133
AciI	CCGC	3 cut(s)	113, 133, 521
AclWI	GGATC	2 cut(s)	182, 770
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	2 cut(s)	104, 484
AfiI	CCNNNNNNNGG	1 cut(s)	906
AgsI	TTSAA	4 cut(s)	190, 438, 881, 1025
AjnI	CCWGG	1 cut(s)	1039
AluBI	AGCT	7 cut(s)	20, 55, 497, 526, 638, 962, 1088
AluI	AGCT	7 cut(s)	20, 55, 497, 526, 638, 962, 1088
Alw21I	GWGCWC	1 cut(s)	528
AlwI	GGATC	2 cut(s)	182, 770
AoxI	GGCC	3 cut(s)	82, 762, 809
ApeKI	GCWGC	2 cut(s)	55, 959
AspS9I	GGNCC	2 cut(s)	762, 897
AsuC2I	CCSGG	2 cut(s)	901, 918
AvaII	GGWCC	1 cut(s)	897
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	839
BanII	GRGCYC	2 cut(s)	528, 1063
BbsI	GAAGAC	2 cut(s)	614, 708
Bbv12I	GWGCWC	1 cut(s)	528
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	42, 971
BccI	CCATC	1 cut(s)	773
BceAI	ACGGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	1 cut(s)	1041
BcnI	CCSGG	2 cut(s)	901, 918
BfaI	CTAG	3 cut(s)	480, 548, 948
BisI	GCNGC	2 cut(s)	56, 960
BlsI	GCNGC	2 cut(s)	57, 961
BmcAI	AGTACT	2 cut(s)	104, 484
Bme1390I	CCNGG	3 cut(s)	901, 918, 1041
Bme18I	GGWCC	1 cut(s)	897
BmgT120I	GGNCC	2 cut(s)	762, 897
BmiI	GGNNCC	3 cut(s)	841, 898, 945
BmrFI	CCNGG	3 cut(s)	901, 918, 1041
BmsI	GCATC	2 cut(s)	81, 390
BpiI	GAAGAC	2 cut(s)	614, 708
BpmI	CTGGAG	1 cut(s)	1065
Bpu10I	CCTNAGC	2 cut(s)	44, 138
BpuMI	CCSGG	2 cut(s)	901, 918
Bsa29I	ATCGAT	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 164, 500, 530, 898, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	906
Bse1I	ACTGG	2 cut(s)	228, 1082
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	1041
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	6 cut(s)	358, 535, 630, 865, 915, 1036
BseLI	CCNNNNNNNGG	1 cut(s)	906
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	3 cut(s)	129, 305, 804
BseNI	ACTGG	2 cut(s)	228, 1082
BseRI	GAGGAG	5 cut(s)	155, 357, 362, 578, 919
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	42, 971
BseYI	CCCAGC	1 cut(s)	995
BshFI	GGCC	3 cut(s)	84, 764, 811
BshNI	GGYRCC	1 cut(s)	839
BshVI	ATCGAT	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	900, 918
BslFI	GGGAC	2 cut(s)	900, 910
BslI	CCNNNNNNNGG	1 cut(s)	906
BsmFI	GGGAC	2 cut(s)	900, 910
BsnI	GGCC	3 cut(s)	84, 764, 811
Bsp1286I	GDGCHC	3 cut(s)	528, 844, 1063
Bsp143I	GATC	4 cut(s)	174, 567, 775, 1066
BspACI	CCGC	3 cut(s)	113, 133, 521
BspANI	GGCC	3 cut(s)	84, 764, 811
BspCNI	CTCAG	3 cut(s)	130, 306, 805
BspDI	ATCGAT	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	841, 898, 945
BspPI	GGATC	2 cut(s)	182, 770
BspQI	GCTCTTC	2 cut(s)	11, 45
BspT107I	GGYRCC	1 cut(s)	839
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	228, 1082
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	4 cut(s)	174, 567, 775, 1066
Bst2UI	CCWGG	1 cut(s)	1041
Bst4CI	ACNGT	3 cut(s)	544, 707, 798
Bst6I	CTCTTC	3 cut(s)	11, 45, 766
BstC8I	GCNNGC	3 cut(s)	121, 135, 1090
BstDEI	CTNAG	7 cut(s)	21, 44, 138, 314, 377, 813, 823
BstF5I	GGATG	6 cut(s)	358, 535, 630, 865, 915, 1036
BstKTI	GATC	4 cut(s)	177, 570, 778, 1069
BstMBI	GATC	4 cut(s)	174, 567, 775, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 61, 143
BstNI	CCWGG	1 cut(s)	1041
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	899, 916, 1039
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	42, 971
BstV2I	GAAGAC	2 cut(s)	614, 708
BstX2I	RGATCY	2 cut(s)	174, 775
BstXI	CCANNNNNNTGG	2 cut(s)	851, 940
BstYI	RGATCY	2 cut(s)	174, 775
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	3 cut(s)	84, 764, 811
BsuTUI	ATCGAT	1 cut(s)	570
BtsCI	GGATG	6 cut(s)	358, 535, 630, 865, 915, 1036
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	108, 977
Cac8I	GCNNGC	3 cut(s)	121, 135, 1090
Cfr13I	GGNCC	2 cut(s)	762, 897
ClaI	ATCGAT	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	103, 483
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	3 cut(s)	263, 934, 1064
CviQI	GTAC	2 cut(s)	103, 483
DdeI	CTNAG	7 cut(s)	21, 44, 138, 314, 377, 813, 823
DpnI	GATC	4 cut(s)	176, 569, 777, 1068
DpnII	GATC	4 cut(s)	174, 567, 775, 1066
DraIII	CACNNNGTG	1 cut(s)	76
DrdI	GACNNNNNNGTC	2 cut(s)	263, 710
DseDI	GACNNNNNNGTC	2 cut(s)	263, 710
Eam1104I	CTCTTC	3 cut(s)	11, 45, 766
EarI	CTCTTC	3 cut(s)	11, 45, 766
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	528, 1063
Eco47I	GGWCC	1 cut(s)	897
Eco53kI	GAGCTC	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	1039
EcoT38I	GRGCYC	2 cut(s)	528, 1063
FaeI	CATG	3 cut(s)	266, 937, 1067
FaqI	GGGAC	2 cut(s)	900, 910
FatI	CATG	3 cut(s)	262, 933, 1063
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	56, 960
FokI	GGATG	6 cut(s)	365, 522, 617, 872, 922, 1043
FriOI	GRGCYC	2 cut(s)	528, 1063
Fsp4HI	GCNGC	2 cut(s)	56, 960
FspBI	CTAG	3 cut(s)	480, 548, 948
GluI	GCNGC	2 cut(s)	56, 960
GsaI	CCCAGC	1 cut(s)	999
GsuI	CTGGAG	1 cut(s)	1065
HaeIII	GGCC	3 cut(s)	84, 764, 811
HapII	CCGG	2 cut(s)	900, 918
Hin1II	CATG	3 cut(s)	266, 937, 1067
HincII	GTYRAC	1 cut(s)	872
HindII	GTYRAC	1 cut(s)	872
HinfI	GANTC	4 cut(s)	249, 605, 819, 967
HpaII	CCGG	2 cut(s)	900, 918
Hpy166II	GTNNAC	6 cut(s)	40, 308, 445, 474, 754, 872
Hpy188I	TCNGA	4 cut(s)	182, 610, 732, 770
Hpy188III	TCNNGA	2 cut(s)	438, 715
Hpy8I	GTNNAC	6 cut(s)	40, 308, 445, 474, 754, 872
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	283, 352
HpyCH4III	ACNGT	3 cut(s)	544, 707, 798
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	216, 232, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 61, 143
HpyF3I	CTNAG	7 cut(s)	21, 44, 138, 314, 377, 813, 823
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	266, 937, 1067
Kzo9I	GATC	4 cut(s)	174, 567, 775, 1066
LguI	GCTCTTC	2 cut(s)	11, 45
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	42, 971
LweI	GCATC	2 cut(s)	81, 390
MaeI	CTAG	3 cut(s)	480, 548, 948
MaeII	ACGT	1 cut(s)	304
MalI	GATC	4 cut(s)	176, 569, 777, 1068
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	4 cut(s)	174, 567, 775, 1066
MboII	GAAGA	8 cut(s)	62, 169, 413, 614, 614, 713, 783, 878
MfeI	CAATTG	1 cut(s)	757
MflI	RGATCY	2 cut(s)	174, 775
MhlI	GDGCHC	3 cut(s)	528, 844, 1063
MluCI	AATT	7 cut(s)	278, 318, 333, 459, 757, 784, 1096
MmeI	TCCRAC	4 cut(s)	378, 409, 563, 780
MseI	TTAA	7 cut(s)	204, 297, 321, 336, 450, 1095, 1113
MslI	CAYNNNNRTG	1 cut(s)	938
MspI	CCGG	2 cut(s)	900, 918
MspR9I	CCNGG	3 cut(s)	901, 918, 1041
MunI	CAATTG	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	1041
MwoI	GCNNNNNNNGC	3 cut(s)	17, 61, 143
NciI	CCSGG	2 cut(s)	901, 918
NdeII	GATC	4 cut(s)	174, 567, 775, 1066
NlaIII	CATG	3 cut(s)	266, 937, 1067
NlaIV	GGNNCC	3 cut(s)	841, 898, 945
NmeAIII	GCCGAG	2 cut(s)	37, 84
NspI	RCATGY	1 cut(s)	266
PciSI	GCTCTTC	2 cut(s)	11, 45
PfeI	GAWTC	4 cut(s)	249, 605, 819, 967
PkrI	GCNGC	2 cut(s)	57, 961
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	1039
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	1 cut(s)	1039
PspN4I	GGNNCC	3 cut(s)	841, 898, 945
PspPI	GGNCC	2 cut(s)	762, 897
PsuI	RGATCY	2 cut(s)	174, 775
RsaI	GTAC	2 cut(s)	104, 484
RsaNI	GTAC	2 cut(s)	103, 483
RseI	CAYNNNNRTG	1 cut(s)	938
SacI	GAGCTC	1 cut(s)	528
SapI	GCTCTTC	2 cut(s)	11, 45
SaqAI	TTAA	7 cut(s)	204, 297, 321, 336, 450, 1095, 1113
SatI	GCNGC	2 cut(s)	56, 960
Sau3AI	GATC	4 cut(s)	174, 567, 775, 1066
Sau96I	GGNCC	2 cut(s)	762, 897
ScaI	AGTACT	2 cut(s)	104, 484
ScrFI	CCNGG	3 cut(s)	901, 918, 1041
SduI	GDGCHC	3 cut(s)	528, 844, 1063
SfaNI	GCATC	2 cut(s)	81, 390
SinI	GGWCC	1 cut(s)	897
SmiMI	CAYNNNNRTG	1 cut(s)	938
Sse9I	AATT	7 cut(s)	278, 318, 333, 459, 757, 784, 1096
SsiI	CCGC	3 cut(s)	113, 133, 521
SspMI	CTAG	3 cut(s)	480, 548, 948
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	3 cut(s)	899, 916, 1039
TaaI	ACNGT	3 cut(s)	544, 707, 798
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	252, 570
TasI	AATT	7 cut(s)	278, 318, 333, 459, 757, 784, 1096
TatI	WGTACW	2 cut(s)	102, 482
TfiI	GAWTC	4 cut(s)	249, 605, 819, 967
Tru1I	TTAA	7 cut(s)	204, 297, 321, 336, 450, 1095, 1113
Tru9I	TTAA	7 cut(s)	204, 297, 321, 336, 450, 1095, 1113
TscAI	CASTG	2 cut(s)	115, 977
TseI	GCWGC	2 cut(s)	55, 959
TspDTI	ATGAA	5 cut(s)	291, 315, 950, 1022, 1047
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	115, 977
VpaK11BI	GGWCC	1 cut(s)	897
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	3 cut(s)	480, 548, 948
ZrmI	AGTACT	2 cut(s)	104, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.