Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

8061885 .. 8062229

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTGTTTGTGAATGTTTGGGCCGTTGGAAGGGACCCGAAGATCTGGGACTGCCCATTGGACTTTTGGCCTGAAAGTGAAAGTGAAAGATTCCCACAAGAAGGTACGGACAACCAGGTGAATTCAGTAGATGTGAGAGGGCAACATTTTCATCTGCTTCCTTTTGGGTCTGGGAGGAGGGTGTGCCCTGGGGTGAACTTGACCGTGAAAATGCTACCGGGGGTACTTGCAGCTATGATCCAGCGCGTTGATTGGAAGGTTGTCGGATCCAGTGCTTTGAGGAGGAAGACCTTATCCACCCGTACAATCCACCACTTCCGTTACCTCTTATGTTGGTCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

115

Amino Acids

13.09

Weight (kDa)

9.35

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 89	2.5e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AclWI	GGATC	3 cut(s)	232, 261, 274
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	3 cut(s)	106, 225, 304
AfiI	CCNNNNNNNGG	2 cut(s)	30, 101
AjnI	CCWGG	2 cut(s)	114, 187
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwI	GGATC	3 cut(s)	232, 261, 274
AoxI	GGCC	2 cut(s)	21, 68
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	21, 34
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	3 cut(s)	130, 205, 330
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	2 cut(s)	116, 189
BcnI	CCSGG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	3 cut(s)	116, 189, 219
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	21, 34
BmiI	GGNNCC	3 cut(s)	35, 36, 268
BmrFI	CCNGG	3 cut(s)	116, 189, 219
BpiI	GAAGAC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	187, 188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 101
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	116, 189
BseDI	CCNNGG	3 cut(s)	187, 188, 218
BseLI	CCNNNNNNNGG	2 cut(s)	30, 101
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	190, 295
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	23, 70
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	47, 62
BslI	CCNNNNNNNGG	2 cut(s)	30, 101
BsmFI	GGGAC	2 cut(s)	47, 62
BsnI	GGCC	2 cut(s)	23, 70
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	42, 237, 266
BspANI	GGCC	2 cut(s)	23, 70
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	35, 36, 268
BspPI	GGATC	3 cut(s)	232, 261, 274
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	187, 188, 218
BssMI	GATC	3 cut(s)	42, 237, 266
Bst2UI	CCWGG	2 cut(s)	116, 189
Bst4CI	ACNGT	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	3 cut(s)	45, 240, 269
BstMBI	GATC	3 cut(s)	42, 237, 266
BstNI	CCWGG	2 cut(s)	116, 189
BstPI	GGTNACC	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	114, 187, 217
BstSLI	GKGCMC	1 cut(s)	188
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	42, 266
BstYI	RGATCY	2 cut(s)	42, 266
BsuRI	GGCC	2 cut(s)	23, 70
BtsIMutI	CAGTG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	21, 34
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	105, 224, 303
CviJI	RGCY	3 cut(s)	23, 70, 233
CviKI_1	RGCY	3 cut(s)	23, 70, 233
CviQI	GTAC	3 cut(s)	105, 224, 303
DpnI	GATC	3 cut(s)	44, 239, 268
DpnII	GATC	3 cut(s)	42, 237, 266
Eco47I	GGWCC	1 cut(s)	34
Eco91I	GGTNACC	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	114, 187
FaiI	YATR	3 cut(s)	236, 331, 343
FaqI	GGGAC	2 cut(s)	47, 62
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	23, 70
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	130, 205, 330
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	24, 95, 250
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	230
HspAI	GCGC	1 cut(s)	244
KflI	GGGWCCC	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	42, 237, 266
Lsp1109I	GCAGC	1 cut(s)	242
MabI	ACCWGGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	320, 336
MalI	GATC	3 cut(s)	44, 239, 268
MboI	GATC	3 cut(s)	42, 237, 266
MboII	GAAGA	2 cut(s)	52, 298
MflI	RGATCY	2 cut(s)	42, 266
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	7, 244
MnlI	CCTC	6 cut(s)	131, 168, 171, 273, 276, 335
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	116, 189, 219
MvaI	CCWGG	2 cut(s)	116, 189
MvnI	CGCG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	42, 237, 266
NlaIV	GGNNCC	3 cut(s)	35, 36, 268
NmuCI	GTSAC	1 cut(s)	336
PasI	CCCWGGG	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	114, 187
PspEI	GGTNACC	1 cut(s)	336
PspGI	CCWGG	2 cut(s)	114, 187
PspN4I	GGNNCC	3 cut(s)	35, 36, 268
PspPI	GGNCC	2 cut(s)	21, 34
PspPPI	RGGWCCY	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	42, 266
RsaI	GTAC	3 cut(s)	106, 225, 304
RsaNI	GTAC	3 cut(s)	105, 224, 303
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	42, 237, 266
Sau96I	GGNCC	2 cut(s)	21, 34
ScrFI	CCNGG	3 cut(s)	116, 189, 219
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	6 cut(s)	106, 120, 235, 261, 293, 327
SexAI	ACCWGGT	1 cut(s)	114
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	1 cut(s)	121
StyD4I	CCNGG	3 cut(s)	114, 187, 217
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	90
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	2 cut(s)	122, 308
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.