Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010332.1

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 911

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgttgtaccatgatcaccttcctccaagccccttagccttgcccatcatcggccacttgcacctccttagccctgtcacccaccgctccctccacaacctcgcattacggtttggtcccttattctctcttcgcctcggctctgtcccatgcatcgttgtaacctcagcggagcttgcaaaagagttcctcaaaacaaacgagaacgccttcataaactggcctcagtcaattgcaatcaatcgtatcacatacaacgcttcgtttgtttttgcaccctatggaccgtactggaagttcatcaggaagctgagcatgaacgagctcctaagcagtcgtagcgtagacaagtttctttctattcgaaaccaagagtgccttgggctcctgaggttgttggccaagaaggcggagaattacgaagatgtgaatctcagtgaggagctacggaggctgggccacaatgtgatggggaagatgatgctggggaaacatgccagtgattctttccgggcagaggaggcgaggttgttggtgcgggaagccacagagatgttaggggagttgaatttgtgtgattttaattgggtttggaagaaattggatttgcaaggatttgggaataaaatcgagaacacgcataggagggttgataattggttagacaaggtcattacagaacgagaagaactgaggaaggaacgtaagaaaaccaatggaggaggtaatgttgaagaggaggaggtcaaggattttcttgacattttacttgatttgttggacgacgagagccgtgagactgcggagcttggattttcaagagttcacataaaggcactaattgcggtacgatttgtttttatcccttttgttgttttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

293

Amino Acids

33.78

Weight (kDa)

7.17

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	6 cut(s)	85, 170, 410, 538, 803, 845
AcoI	YGGCCR	2 cut(s)	52, 399
AcsI	RAATTY	1 cut(s)	568
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	3 cut(s)	8, 290, 849
AfiI	CCNNNNNNNGG	2 cut(s)	50, 517
AgsI	TTSAA	3 cut(s)	568, 734, 819
AluBI	AGCT	5 cut(s)	175, 310, 325, 445, 808
AluI	AGCT	5 cut(s)	175, 310, 325, 445, 808
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	791
AoxI	GGCC	4 cut(s)	52, 221, 399, 457
ApoI	RAATTY	1 cut(s)	568
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	116, 284, 457
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	8, 70
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	116, 284
AxyI	CCTNAGG	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	401
BanII	GRGCYC	2 cut(s)	327, 387
Bbv12I	GWGCWC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	53, 463
BceAI	ACGGC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	791
BglI	GCCNNNNNGGC	1 cut(s)	407
BlpI	GCTNAGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	2 cut(s)	116, 284
BmgT120I	GGNCC	3 cut(s)	116, 284, 457
BmiI	GGNNCC	2 cut(s)	118, 386
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	162, 471
Bpu10I	CCTNAGC	4 cut(s)	34, 68, 166, 329
Bpu1102I	GCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	136, 379
BsaXI	ACNNNNNCTCC	4 cut(s)	512, 542, 714, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 517
Bse1I	ACTGG	3 cut(s)	224, 296, 498
Bse21I	CCTNAGG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	136, 379
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	50, 517
BseMII	CTCAG	6 cut(s)	180, 239, 302, 380, 448, 683
BseNI	ACTGG	3 cut(s)	224, 296, 498
BseRI	GAGGAG	5 cut(s)	455, 533, 735, 752, 755
BseYI	CCCAGC	2 cut(s)	454, 484
BshFI	GGCC	4 cut(s)	54, 223, 401, 459
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	102, 131
BslI	CCNNNNNNNGG	2 cut(s)	50, 517
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	102, 131
BsnI	GGCC	4 cut(s)	54, 223, 401, 459
Bsp119I	TTCGAA	1 cut(s)	364
Bsp1286I	GDGCHC	2 cut(s)	327, 387
Bsp143I	GATC	1 cut(s)	13
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	6 cut(s)	85, 170, 410, 538, 803, 845
BspANI	GGCC	4 cut(s)	54, 223, 401, 459
BspCNI	CTCAG	6 cut(s)	179, 238, 303, 381, 447, 684
BspLI	GGNNCC	2 cut(s)	118, 386
BspT104I	TTCGAA	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	224, 296, 498
BssECI	CCNNGG	2 cut(s)	136, 379
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	111, 288
Bst6I	CTCTTC	2 cut(s)	135, 729
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	9 cut(s)	34, 68, 166, 225, 311, 329, 389, 434, 692
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 339, 407, 451, 521, 842
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	54, 223, 401, 459
BtsIMutI	CAGTG	2 cut(s)	442, 505
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	116, 284, 457
Csp6I	GTAC	3 cut(s)	7, 289, 848
CviAII	CATG	4 cut(s)	11, 150, 316, 494
CviQI	GTAC	3 cut(s)	7, 289, 848
DdeI	CTNAG	9 cut(s)	34, 68, 166, 225, 311, 329, 389, 434, 692
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	466
EaeI	YGGCCR	2 cut(s)	52, 399
Eam1104I	CTCTTC	2 cut(s)	135, 729
EarI	CTCTTC	2 cut(s)	135, 729
EciI	GGCGGA	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	2 cut(s)	327, 387
Eco47I	GGWCC	2 cut(s)	116, 284
Eco53kI	GAGCTC	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	155
EcoT38I	GRGCYC	2 cut(s)	327, 387
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	4 cut(s)	14, 153, 319, 497
FaiI	YATR	9 cut(s)	12, 151, 215, 253, 282, 317, 495, 642, 830
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	2 cut(s)	102, 131
FatI	CATG	4 cut(s)	10, 149, 315, 493
FauI	CCCGC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	345
FriOI	GRGCYC	2 cut(s)	327, 387
GsaI	CCCAGC	2 cut(s)	458, 488
HaeIII	GGCC	4 cut(s)	54, 223, 401, 459
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	4 cut(s)	14, 153, 319, 497
HinfI	GANTC	2 cut(s)	430, 503
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	2 cut(s)	8, 70
Hpy166II	GTNNAC	2 cut(s)	346, 826
Hpy188III	TCNNGA	5 cut(s)	304, 388, 631, 758, 819
Hpy8I	GTNNAC	2 cut(s)	346, 826
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	4 cut(s)	29, 220, 400, 691
HpyCH4III	ACNGT	2 cut(s)	111, 288
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	6 cut(s)	61, 153, 179, 236, 275, 610
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 339, 407, 451, 521, 842
HpyF3I	CTNAG	9 cut(s)	34, 68, 166, 225, 311, 329, 389, 434, 692
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	4 cut(s)	14, 153, 319, 497
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	6 cut(s)	92, 172, 330, 390, 442, 805
LpnPI	CCDG	9 cut(s)	87, 205, 277, 289, 401, 440, 470, 511, 524
LweI	GCATC	2 cut(s)	162, 471
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	2 cut(s)	76, 160
MalI	GATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	1 cut(s)	13
MboII	GAAGA	6 cut(s)	122, 434, 487, 607, 698, 746
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	327, 387
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	7 cut(s)	231, 415, 568, 583, 599, 655, 840
MluNI	TGGCCA	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	759
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	2 cut(s)	498, 551
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	6 cut(s)	176, 339, 407, 451, 521, 842
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	14, 153, 319, 497
NlaIV	GGNNCC	2 cut(s)	118, 386
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	155
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	430, 503
PflFI	GACNNNGTC	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	327
PspFI	CCCAGC	2 cut(s)	454, 484
PspN4I	GGNNCC	2 cut(s)	118, 386
PspPI	GGNCC	3 cut(s)	116, 284, 457
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	3 cut(s)	8, 290, 849
RsaNI	GTAC	3 cut(s)	7, 289, 848
RseI	CAYNNNNRTG	2 cut(s)	498, 551
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	3 cut(s)	116, 284, 457
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	327, 387
SfaNI	GCATC	2 cut(s)	162, 471
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	2 cut(s)	116, 284
SmiMI	CAYNNNNRTG	2 cut(s)	498, 551
Sse9I	AATT	7 cut(s)	231, 415, 568, 583, 599, 655, 840
SsiI	CCGC	6 cut(s)	85, 170, 410, 538, 803, 845
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	111, 288
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	2 cut(s)	364, 630
TasI	AATT	7 cut(s)	231, 415, 568, 583, 599, 655, 840
TfiI	GAWTC	2 cut(s)	430, 503
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	442, 505
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	202, 289, 332
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	442, 505
Tth111I	GACNNNGTC	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	116, 284
XapI	RAATTY	1 cut(s)	568
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.