Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8069634.1

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 494

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8069634.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgctcttcgccgagagagctaagagttttctggctgtgaacctaagcgaagagctgccgaggctttgccacaatgtgataggccagatgatgcttgggaagtactccactgcggttgcgagcaacacagagcgggctgaggaggcgaggttagtggttagggaggcgacgaggatcttcggagagttgaacttgtgtgattttaatatggtatgcaagaaactggatttgcagggatttggaaagagaatcgaggacacgcatgtcaagtttgatgaattggtggagaaggttgttaatgaacgtgaacaactgagaattaagaacaacaaaattaagggaggagaggaggatgagaaggaggtcaaggattttctaagcatcttgcttgatatgttggaagatgagagtagtgagagcgtggaggttggattttcaagagttcacattaaggctgtaattacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.69

Weight (kDa)

5.23

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	133
AciI	CCGC	2 cut(s)	113, 133
AclWI	GGATC	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	190, 438
AluBI	AGCT	2 cut(s)	20, 55
AluI	AGCT	2 cut(s)	20, 55
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmcAI	AGTACT	1 cut(s)	104
BmsI	GCATC	2 cut(s)	81, 390
Bpu10I	CCTNAGC	2 cut(s)	44, 138
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	129, 305
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	3 cut(s)	155, 357, 362
BseXI	GCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	113, 133
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	130, 306
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	2 cut(s)	11, 45
BsrBI	CCGCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	174
Bst6I	CTCTTC	2 cut(s)	11, 45
BstC8I	GCNNGC	2 cut(s)	121, 135
BstDEI	CTNAG	5 cut(s)	21, 44, 138, 314, 377
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 61, 143
BstNSI	RCATGY	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	121, 135
Csp6I	GTAC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	20, 35, 55, 64, 84, 137, 455
CviKI_1	RGCY	7 cut(s)	20, 35, 55, 64, 84, 137, 455
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	5 cut(s)	21, 44, 138, 314, 377
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraIII	CACNNNGTG	1 cut(s)	76
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	11, 45
EarI	CTCTTC	2 cut(s)	11, 45
FaeI	CATG	1 cut(s)	266
FaiI	YATR	4 cut(s)	209, 214, 264, 395
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	249
Hpy166II	GTNNAC	3 cut(s)	40, 308, 445
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	3 cut(s)	40, 308, 445
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	283, 352
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	2 cut(s)	216, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 61, 143
HpyF3I	CTNAG	5 cut(s)	21, 44, 138, 314, 377
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	174
LguI	GCTCTTC	2 cut(s)	11, 45
LpnPI	CCDG	4 cut(s)	17, 98, 209, 218
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	81, 390
MaeII	ACGT	1 cut(s)	304
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	62, 169, 413
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	4 cut(s)	278, 318, 333, 459
MmeI	TCCRAC	2 cut(s)	378, 409
MseI	TTAA	5 cut(s)	204, 297, 321, 336, 450
MwoI	GCNNNNNNNGC	3 cut(s)	17, 61, 143
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	266
NmeAIII	GCCGAG	2 cut(s)	37, 84
NspI	RCATGY	1 cut(s)	266
PciSI	GCTCTTC	2 cut(s)	11, 45
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SapI	GCTCTTC	2 cut(s)	11, 45
SaqAI	TTAA	5 cut(s)	204, 297, 321, 336, 450
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	174
ScaI	AGTACT	1 cut(s)	104
SetI	ASST	8 cut(s)	22, 45, 57, 152, 294, 307, 366, 429
SfaNI	GCATC	2 cut(s)	81, 390
Sse9I	AATT	4 cut(s)	278, 318, 333, 459
SsiI	CCGC	2 cut(s)	113, 133
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	252
TasI	AATT	4 cut(s)	278, 318, 333, 459
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	5 cut(s)	204, 297, 321, 336, 450
Tru9I	TTAA	5 cut(s)	204, 297, 321, 336, 450
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	291, 315
TspRI	CASTG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.