Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

6693106 .. 6693732

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGTGGGCGCTGGCAGAGCTCATCAACCATACAAAGGTGCTTAACAAAGCAAGGGAGGAGATCGAAAGAGTCGTCGGGAACGGACGACTACTCGTAGAATCCGACGGTCCAAACCTTCCATACATCCAAGCCATCATAAAAGAAACACTTAGACTACACCCACCAGTGCCGTTGATCACAAGAAAATGTGTCCAACAATGTAAGATTGGAAAATATGTGATCCCGGATAACACAGTTCTATTTGTGAATGCTCGGGCCATTGGAAGGGATCCAAAGTATTGGGAACATCCTTTGGACTTTCAACCCGAAAGATTCTTGTCGCGGCTCGGAGAAGGCGGTCGGACTAGCACAATAGATGTGAGGGGACAACATTTTCAGCTAATTTCATTCGGTTCCGGGAGGAGGATATGCCCTGGTTTAAACTTAGCCTTGCAAATGCTGCCTGGGCTACTTGGTGCTATGATCCAGTGCTTTGATTTTGAGGTTGTTAAGCCAGATCGGAACAATATGAACGGTGGTGATCGTGTTCTTGAAATGGATGAACGGCCTGGAATGACTACTCCACGAGCCAATGATCTGGTTAGTATTCCAGTGGCACGTTTGAGCTCACTTTGTATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

8.65

Isoelectric Point (pI)

22.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 169	8.5e-51	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	325
AciI	CCGC	2 cut(s)	325, 339
AclWI	GGATC	4 cut(s)	217, 266, 279, 460
AfiI	CCNNNNNNNGG	3 cut(s)	37, 267, 405
AgsI	TTSAA	2 cut(s)	305, 536
AjnI	CCWGG	3 cut(s)	415, 445, 550
AluBI	AGCT	3 cut(s)	22, 382, 609
AluI	AGCT	3 cut(s)	22, 382, 609
Alw21I	GWGCWC	2 cut(s)	24, 611
AlwI	GGATC	4 cut(s)	217, 266, 279, 460
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	258, 548
ApeKI	GCWGC	1 cut(s)	442
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	110, 258
AsuC2I	CCSGG	2 cut(s)	227, 400
AsuHPI	GGTGA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	24, 611
BauI	CACGAG	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	24, 611
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	2 cut(s)	157, 563
BciT130I	CCWGG	3 cut(s)	417, 447, 552
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	227, 400
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	2 cut(s)	326, 443
BlsI	GCNGC	2 cut(s)	327, 444
Bme1390I	CCNGG	5 cut(s)	227, 400, 417, 447, 552
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	110, 258
BmiI	GGNNCC	2 cut(s)	273, 397
BmrFI	CCNGG	5 cut(s)	227, 400, 417, 447, 552
BpuMI	CCSGG	2 cut(s)	227, 400
BsaJI	CCNNGG	2 cut(s)	415, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 267, 405
Bse1I	ACTGG	3 cut(s)	167, 469, 593
BseBI	CCWGG	3 cut(s)	417, 447, 552
BseDI	CCNNGG	2 cut(s)	415, 446
BseGI	GGATG	3 cut(s)	126, 289, 547
BseLI	CCNNNNNNNGG	3 cut(s)	37, 267, 405
BseNI	ACTGG	3 cut(s)	167, 469, 593
BseRI	GAGGAG	2 cut(s)	74, 418
BseXI	GCAGC	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	260, 550
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	24, 611
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	227, 399
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	37, 267, 405
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	260, 550
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	24, 611
Bsp143I	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
BspACI	CCGC	2 cut(s)	325, 339
BspANI	GGCC	2 cut(s)	260, 550
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	273, 397
BspPI	GGATC	4 cut(s)	217, 266, 279, 460
BsrI	ACTGG	3 cut(s)	167, 469, 593
BssECI	CCNNGG	2 cut(s)	415, 446
BssMI	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	3 cut(s)	417, 447, 552
Bst4CI	ACNGT	3 cut(s)	110, 238, 518
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	152, 427
BstF5I	GGATG	3 cut(s)	126, 289, 547
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	8 cut(s)	66, 180, 225, 274, 468, 502, 526, 580
BstMBI	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 442, 448
BstNI	CCWGG	3 cut(s)	417, 447, 552
BstSCI	CCNGG	5 cut(s)	225, 398, 415, 445, 550
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	2 cut(s)	282, 580
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	260, 550
BtsCI	GGATG	3 cut(s)	126, 289, 547
BtsIMutI	CAGTG	3 cut(s)	174, 476, 600
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	110, 258
DdeI	CTNAG	2 cut(s)	152, 427
DpnI	GATC	8 cut(s)	65, 179, 224, 273, 467, 501, 525, 579
DpnII	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
DraI	TTTAAA	1 cut(s)	423
Ecl136II	GAGCTC	2 cut(s)	22, 609
Eco24I	GRGCYC	2 cut(s)	24, 611
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	2 cut(s)	22, 609
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	2 cut(s)	22, 609
EcoRII	CCWGG	3 cut(s)	415, 445, 550
EcoT38I	GRGCYC	2 cut(s)	24, 611
FaiI	YATR	7 cut(s)	33, 124, 140, 219, 412, 464, 512
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	326, 443
FokI	GGATG	3 cut(s)	113, 276, 554
FriOI	GRGCYC	2 cut(s)	24, 611
Fsp4HI	GCNGC	2 cut(s)	326, 443
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	326, 443
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	260, 550
HapII	CCGG	2 cut(s)	227, 399
HhaI	GCGC	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	3 cut(s)	72, 101, 315
HpaII	CCGG	2 cut(s)	227, 399
HphI	GGTGA	1 cut(s)	533
Hpy188I	TCNGA	4 cut(s)	106, 332, 345, 504
Hpy188III	TCNNGA	2 cut(s)	79, 533
Hpy99I	CGWCG	2 cut(s)	80, 110
HpyAV	CCTTC	3 cut(s)	128, 261, 329
HpyCH4III	ACNGT	3 cut(s)	110, 238, 518
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 442, 448
HpyF3I	CTNAG	2 cut(s)	152, 427
HpySE526I	ACGT	1 cut(s)	601
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
Lsp1109I	GCAGC	1 cut(s)	429
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	601
MalI	GATC	8 cut(s)	65, 179, 224, 273, 467, 501, 525, 579
MboI	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	24, 611
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	3 cut(s)	129, 220, 323
MnlI	CCTC	5 cut(s)	52, 357, 396, 399, 478
MseI	TTAA	3 cut(s)	45, 422, 492
MspI	CCGG	2 cut(s)	227, 399
MspR9I	CCNGG	5 cut(s)	227, 400, 417, 447, 552
MssI	GTTTAAAC	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	417, 447, 552
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	19, 442, 448
NciI	CCSGG	2 cut(s)	227, 400
NdeII	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
NlaIV	GGNNCC	2 cut(s)	273, 397
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 102
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	101, 315
PfoI	TCCNGGA	2 cut(s)	225, 398
PkrI	GCNGC	2 cut(s)	327, 444
PleI	GAGTC	1 cut(s)	80
PmeI	GTTTAAAC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	80
Psp124BI	GAGCTC	2 cut(s)	24, 611
Psp6I	CCWGG	3 cut(s)	415, 445, 550
PspGI	CCWGG	3 cut(s)	415, 445, 550
PspN4I	GGNNCC	2 cut(s)	273, 397
PspPI	GGNCC	2 cut(s)	110, 258
PsuI	RGATCY	1 cut(s)	271
SacI	GAGCTC	2 cut(s)	24, 611
SaqAI	TTAA	3 cut(s)	45, 422, 492
SatI	GCNGC	2 cut(s)	326, 443
Sau3AI	GATC	8 cut(s)	63, 177, 222, 271, 465, 499, 523, 577
Sau96I	GGNCC	2 cut(s)	110, 258
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	5 cut(s)	227, 400, 417, 447, 552
SduI	GDGCHC	2 cut(s)	24, 611
SetI	ASST	7 cut(s)	24, 42, 120, 384, 489, 604, 611
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	2 cut(s)	325, 339
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	2 cut(s)	24, 611
StyD4I	CCNGG	5 cut(s)	225, 398, 415, 445, 550
TaaI	ACNGT	3 cut(s)	110, 238, 518
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	384
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	2 cut(s)	101, 315
Tru1I	TTAA	3 cut(s)	45, 422, 492
Tru9I	TTAA	3 cut(s)	45, 422, 492
TscAI	CASTG	3 cut(s)	174, 476, 600
TseI	GCWGC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	378, 527, 558
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	3 cut(s)	174, 476, 600
VpaK11BI	GGWCC	1 cut(s)	110
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.