Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

8944800 .. 8949585

Gene Structure 4786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14550.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTGGCAGAAAGGGCACCAACATCATCGGTTTGAAAGAGGAAGAGCTCAACCTTGCTTCTTTTTAAATATAGCAGTAACCAGAGCCTCTTTTACAACGGGGTACATATCTCTAGCATTTCTTAGCTTTGTGCTGTATACTCAGTTTGTCAGAACTGTTCTCTGCATGATGGCATGGAAGAAGATAAAGATTATGGAGAATCATGCACAGGGAAAAAGTCAGGATTTATTCACGGCTAGTACTGACACAACAGCTATTGCAATGGAGTGGGCGTTAGCGGAACTCATCAATCATCCGGCGGTGCTCGAGAAACCAAGGGAGGAGATCGATCGTGTAGTTGGAAATGAACGAATAGTGGAGGAATCTGATGGTTCAACTCTTCCATACATCCAAGCTATCATCAAAGAAACATTTAGGCTACACCCACATGTTCCTATGGTCACAAGAATATCAGTAGAAGACTACAAGGTCGGGGAATATGTTATTCCGACGAATACCATACTCTTTGTGAACAACTGGGCCATCGGAAGAGATCCTAAAAACTGGGAAAAACCTTTGGACTTTTGGCCTGAAAGATTCTTAGAAGGGGGTGACCAGATAACCGGAATGGATGTTAGAGGTCAACTTTTTCAGTTTCTTCCATTTGGGTCCGAGAGGAGAATATGTCCCGGTATCAACTTGACCATGAAAATGGTTCCTAGTCTGGTGGCAGCAATGATTCAGTGCTTTGATTGGAAGGTTATTCCAAGCAAGAAGATGAACAATAATGATTGTGTTGTTGAAATGGATGAAAGGCCTGGACTAACAACTCCAAGAGCCCATGATCTTGTGTGTTTTCCAGTAGCTTGCATGCATCTGCTCAATATCCTTAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

293

Amino Acids

33.54

Weight (kDa)

7.11

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	63 - 258	9.3e-56	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	2 cut(s)	278, 299
AclWI	GGATC	1 cut(s)	527
AfaI	GTAC	2 cut(s)	104, 241
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	35, 375, 782
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	5 cut(s)	47, 126, 254, 395, 845
AluI	AGCT	5 cut(s)	47, 126, 254, 395, 845
Alw21I	GWGCWC	2 cut(s)	49, 306
AlwI	GGATC	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	519, 566, 794
ApeKI	GCWGC	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	519, 648
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	2 cut(s)	49, 820
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	49, 306
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	3 cut(s)	163, 362, 530
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	669
BfaI	CTAG	3 cut(s)	113, 237, 699
BisI	GCNGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	712
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	669, 798
Bme18I	GGWCC	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	519, 648
BmiI	GGNNCC	3 cut(s)	17, 649, 696
BmrFI	CCNGG	2 cut(s)	669, 798
BmrI	ACTGGG	2 cut(s)	526, 553
BmsI	GCATC	1 cut(s)	862
BmuI	ACTGGG	2 cut(s)	526, 553
BpiI	GAAGAC	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	669
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	602
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 649, 679
Bse1I	ACTGG	3 cut(s)	521, 548, 839
Bse3DI	GCAATG	2 cut(s)	267, 720
BseBI	CCWGG	1 cut(s)	798
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	4 cut(s)	292, 387, 616, 793
BseMI	GCAATG	2 cut(s)	267, 720
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	3 cut(s)	521, 548, 839
BseRI	GAGGAG	2 cut(s)	335, 670
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	722
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	521, 568, 796
BshNI	GGYRCC	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	2 cut(s)	49, 306
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	296, 603, 669
BslFI	GGGAC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	3 cut(s)	521, 568, 796
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	4 cut(s)	18, 49, 306, 820
Bsp143I	GATC	4 cut(s)	324, 328, 532, 823
BspACI	CCGC	2 cut(s)	278, 299
BspANI	GGCC	3 cut(s)	521, 568, 796
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	17, 649, 696
BspPI	GGATC	1 cut(s)	527
BspQI	GCTCTTC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	15
BsrDI	GCAATG	2 cut(s)	267, 720
BsrI	ACTGG	3 cut(s)	521, 548, 839
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	4 cut(s)	324, 328, 532, 823
BssNAI	GTATAC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	3 cut(s)	37, 384, 523
BstC8I	GCNNGC	2 cut(s)	847, 851
BstDEI	CTNAG	3 cut(s)	122, 141, 580
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	4 cut(s)	292, 387, 616, 793
BstKTI	GATC	4 cut(s)	327, 331, 535, 826
BstMBI	GATC	4 cut(s)	324, 328, 532, 823
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	798
BstNSI	RCATGY	2 cut(s)	431, 853
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	667, 796
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	722
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	521, 568, 796
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	292, 387, 616, 793
BtsIMutI	CAGTG	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	847, 851
Cfr13I	GGNCC	2 cut(s)	519, 648
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	103, 240
CviAII	CATG	7 cut(s)	166, 174, 203, 428, 685, 821, 850
CviQI	GTAC	2 cut(s)	103, 240
DdeI	CTNAG	3 cut(s)	122, 141, 580
DpnI	GATC	4 cut(s)	326, 330, 534, 825
DpnII	GATC	4 cut(s)	324, 328, 532, 823
DraI	TTTAAA	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
Eam1104I	CTCTTC	3 cut(s)	37, 384, 523
EarI	CTCTTC	3 cut(s)	37, 384, 523
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	314
Eco147I	AGGCCT	1 cut(s)	796
Eco24I	GRGCYC	2 cut(s)	49, 820
Eco47I	GGWCC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	855
EcoT38I	GRGCYC	2 cut(s)	49, 820
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	7 cut(s)	169, 177, 206, 431, 688, 824, 853
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	7 cut(s)	165, 173, 202, 427, 684, 820, 849
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	4 cut(s)	279, 374, 623, 800
FriOI	GRGCYC	2 cut(s)	49, 820
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	3 cut(s)	113, 237, 699
GluI	GCNGC	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	521, 568, 796
HapII	CCGG	3 cut(s)	296, 603, 669
Hin1II	CATG	7 cut(s)	169, 177, 206, 431, 688, 824, 853
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HinfI	GANTC	4 cut(s)	199, 362, 576, 718
HpaII	CCGG	3 cut(s)	296, 603, 669
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	3 cut(s)	138, 511, 623
Hpy188I	TCNGA	5 cut(s)	152, 367, 489, 527, 652
Hpy188III	TCNNGA	2 cut(s)	221, 307
Hpy8I	GTNNAC	3 cut(s)	138, 511, 623
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	578, 730
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	165, 206, 260, 849, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	3 cut(s)	122, 141, 580
Hsp92II	CATG	7 cut(s)	169, 177, 206, 431, 688, 824, 853
Kzo9I	GATC	4 cut(s)	324, 328, 532, 823
LguI	GCTCTTC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	1 cut(s)	862
MaeI	CTAG	3 cut(s)	113, 237, 699
MaeIII	GTNAC	3 cut(s)	76, 439, 590
MalI	GATC	4 cut(s)	326, 330, 534, 825
MboI	GATC	4 cut(s)	324, 328, 532, 823
MboII	GAAGA	8 cut(s)	54, 190, 193, 371, 470, 540, 629, 766
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	4 cut(s)	18, 49, 306, 820
MmeI	TCCRAC	2 cut(s)	319, 512
MnlI	CCTC	6 cut(s)	32, 97, 313, 352, 611, 648
Mph1103I	ATGCAT	1 cut(s)	855
MseI	TTAA	2 cut(s)	65, 870
MslI	CAYNNNNRTG	2 cut(s)	426, 689
MspI	CCGG	3 cut(s)	296, 603, 669
MspR9I	CCNGG	2 cut(s)	669, 798
MvaI	CCWGG	1 cut(s)	798
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	669
NdeII	GATC	4 cut(s)	324, 328, 532, 823
NlaIII	CATG	7 cut(s)	169, 177, 206, 431, 688, 824, 853
NlaIV	GGNNCC	3 cut(s)	17, 649, 696
NmuCI	GTSAC	2 cut(s)	439, 590
NsiI	ATGCAT	1 cut(s)	855
NspI	RCATGY	2 cut(s)	431, 853
PaeI	GCATGC	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	796
PciI	ACATGT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	199, 362, 576, 718
PkrI	GCNGC	1 cut(s)	712
Ple19I	CGATCG	1 cut(s)	331
PscI	ACATGT	1 cut(s)	427
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	796
PspEI	GGTNACC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	3 cut(s)	17, 649, 696
PspPI	GGNCC	2 cut(s)	519, 648
PsuI	RGATCY	1 cut(s)	532
PvuI	CGATCG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	104, 241
RsaNI	GTAC	2 cut(s)	103, 240
RseI	CAYNNNNRTG	2 cut(s)	426, 689
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	65, 870
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	4 cut(s)	324, 328, 532, 823
Sau96I	GGNCC	2 cut(s)	519, 648
ScaI	AGTACT	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	669, 798
SduI	GDGCHC	4 cut(s)	18, 49, 306, 820
SfaNI	GCATC	1 cut(s)	862
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	426, 689
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	853
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	2 cut(s)	278, 299
SspMI	CTAG	3 cut(s)	113, 237, 699
SstI	GAGCTC	1 cut(s)	49
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	2 cut(s)	667, 796
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	306, 327
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	4 cut(s)	199, 362, 576, 718
Tru1I	TTAA	2 cut(s)	65, 870
Tru9I	TTAA	2 cut(s)	65, 870
TscAI	CASTG	1 cut(s)	728
TseFI	GTSAC	2 cut(s)	439, 590
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	2 cut(s)	439, 590
TspDTI	ATGAA	4 cut(s)	360, 701, 773, 804
TspRI	CASTG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	648
XceI	RCATGY	2 cut(s)	431, 853
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	3 cut(s)	113, 237, 699
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.