Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011355.1

Orthogroup ID

OG0000807

Physical Location & Seq

Genomic Coordinates Forward (+)

19906 .. 20493

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011355.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgctcgagaaagcaaggaaagagattgatcgagttattagagatggacaattagtgagagaatcagatgttccaaatcttccgtacctccaagccatcataaaagaaacatttaggctacacccacccttgcctttgctcatgaaaatatgcggaaaacagtgtaagatcggcaaatatttcattccagaaaacgcattcttatttgtgaatctttgggcgattggaagggatcctacgaactgggaaaacccactggaattctggccagaaagattcttacatctcgatgggagagaccaaacaagtacattaatagatgttaaagggcaacactatcagcttattccattcgggtctggaagaaggatatgtgctggtgtgaacttaactatgaaaatcgtccctagattactagcagcaatgattcagtgctttgattggaaagtcggtggctcagatttcaacaagatgaacaacaataatgttcttgatatgaatgaagagcctggactaaccactcgaagggccaataatcttgtgtgtgttccggtggctcgtttgaaccacaatattattgacccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

195

Amino Acids

22.42

Weight (kDa)

8.85

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34800 FvH4_5g35140 FvH4_5g35160 FvH4_6g14450 FvH4_6g14541 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_6g14550 FvH4_7g16600
malus_domestica	MD03G1101300.v1.1 MD03G1101600.v1.1 MD11G1115200.v1.1 MD11G1115300.v1.1 MD11G1115400.v1.1 MD11G1115500.v1.1
prunus_persica	Prupe.6G007200_v2.0.a1 Prupe.6G086200_v2.0.a1 Prupe.6G086500_v2.0.a1
pyrus_communis	pycom03g08300 pycom03g08310 pycom11g09670 pycom11g09750
rosa_chinensis	RchiOBHm_Chr5g0062571 RchiOBHm_Chr5g0062591
rosa_laevigata	RLG00000032126 RLG00000035565 RLG00000035566 RLG00000035567 RLG00000035568
rosa_multiflora	Rmu_co8069634.1_g000001 Rmu_sc0003162.1_g000001 Rmu_sc0004988.1_g000034 Rmu_sc0010332.1_g000001 Rmu_sc0010332.1_g000004 Rmu_sc0011355.1_g000003 Rmu_sc0011355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018010 Rroxscaffold_1G00018020 Rroxscaffold_1G00018070 Rroxscaffold_4G00319860
rosa_rugosa	Rorug04G0121200 Rorug04G0121300 Rorug05G0019000 Rorug05G0019100 Rorug05G0246000 Rorug05G0350500 Rorug05G0350600
rosa_samantha	Rh5AG410500 Rh5AG410700 Rh5AG410900 Rh5BG111200 Rh5BG424600 Rh5BG424700 Rh5BG424900 Rh5CG359400 Rh5CG448300 Rh5CG448400 Rh5CG448600 Rh5DG438800 Rh5DG438900 Rh5DG439100
rosa_wichuraiana	Rw0G000790 Rw0G000810 Rw0G007980 Rw5G009910 Rw5G038650 Rw5G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	227, 240
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	86, 310
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	2 cut(s)	466, 565
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	227, 240
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	2 cut(s)	266, 528
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	260
AseI	ATTAAT	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	232
BarI	GAAGNNNNNNTAC	2 cut(s)	220, 252
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	3 cut(s)	38, 104, 284
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	2 cut(s)	408, 416
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	510
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	2 cut(s)	248, 261
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	248, 261
BseXI	GCAGC	1 cut(s)	431
BshFI	GGCC	2 cut(s)	268, 530
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	268, 530
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	28, 168, 232
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	268, 530
BspCNI	CTCAG	1 cut(s)	470
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	227, 240
BspQI	GCTCTTC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	248, 261
BssMI	GATC	3 cut(s)	28, 168, 232
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	457
BstKTI	GATC	3 cut(s)	31, 171, 235
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	3 cut(s)	28, 168, 232
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	268, 530
BtsIMutI	CAGTG	3 cut(s)	167, 254, 437
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	85, 309
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	8 cut(s)	95, 118, 268, 343, 456, 508, 530, 557
CviKI_1	RGCY	8 cut(s)	95, 118, 268, 343, 456, 508, 530, 557
CviQI	GTAC	2 cut(s)	85, 309
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	3 cut(s)	30, 170, 234
DpnII	GATC	3 cut(s)	28, 168, 232
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	508
FaeI	CATG	1 cut(s)	145
FaiI	YATR	7 cut(s)	101, 143, 151, 373, 395, 497, 586
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	2 cut(s)	408, 416
GluI	GCNGC	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	268, 530
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	4 cut(s)	62, 211, 276, 427
HpaII	CCGG	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	67, 460
Hpy188III	TCNNGA	6 cut(s)	7, 142, 188, 287, 360, 491
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	3 cut(s)	222, 360, 519
HpyCH4III	ACNGT	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	28, 168, 232
LguI	GCTCTTC	1 cut(s)	498
Lsp1109I	GCAGC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	408, 416
MalI	GATC	3 cut(s)	30, 170, 234
MboI	GATC	3 cut(s)	28, 168, 232
MboII	GAAGA	3 cut(s)	71, 375, 515
MflI	RGATCY	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	2 cut(s)	50, 260
MluNI	TGGCCA	1 cut(s)	268
MnlI	CCTC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	3 cut(s)	314, 324, 389
MslI	CAYNNNNRTG	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	268
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	510
NdeII	GATC	3 cut(s)	28, 168, 232
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	234
PaeR7I	CTCGAG	1 cut(s)	5
PagI	TCATGA	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	498
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	4 cut(s)	62, 211, 276, 427
PkrI	GCNGC	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	86, 310
RsaNI	GTAC	2 cut(s)	85, 309
RseI	CAYNNNNRTG	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	314, 324, 389
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	28, 168, 232
Sau96I	GGNCC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	510
SetI	ASST	2 cut(s)	90, 345
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	50, 260
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	2 cut(s)	179, 574
SspMI	CTAG	2 cut(s)	408, 416
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	6, 31, 288, 523
TasI	AATT	2 cut(s)	50, 260
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	4 cut(s)	62, 211, 276, 427
Tru1I	TTAA	3 cut(s)	314, 324, 389
Tru9I	TTAA	3 cut(s)	314, 324, 389
TscAI	CASTG	3 cut(s)	167, 261, 437
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	6 cut(s)	158, 172, 410, 488, 512, 516
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	3 cut(s)	167, 261, 437
VspI	ATTAAT	1 cut(s)	314
XapI	RAATTY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XhoI	CTCGAG	1 cut(s)	5
XspI	CTAG	2 cut(s)	408, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.