Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 436, 726 |
| AccIII | TCCGGA | 2 cut(s) | 280, 484 |
| AciI | CCGC | 1 cut(s) | 1787 |
| AclWI | GGATC | 2 cut(s) | 197, 813 |
| AcsI | RAATTY | 4 cut(s) | 984, 1059, 1132, 1672 |
| AcuI | CTGAAG | 4 cut(s) | 899, 1079, 1644, 1679 |
| AfaI | GTAC | 5 cut(s) | 41, 1144, 1185, 1234, 1248 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 85, 484, 1275 |
| AflII | CTTAAG | 1 cut(s) | 1679 |
| AflIII | ACRYGT | 1 cut(s) | 289 |
| AjnI | CCWGG | 2 cut(s) | 675, 1288 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 155, 187 |
| Alw26I | GTCTC | 2 cut(s) | 566, 941 |
| AlwI | GGATC | 2 cut(s) | 197, 813 |
| Aor13HI | TCCGGA | 2 cut(s) | 280, 484 |
| AoxI | GGCC | 3 cut(s) | 174, 265, 319 |
| ApeKI | GCWGC | 2 cut(s) | 404, 864 |
| ApoI | RAATTY | 4 cut(s) | 984, 1059, 1132, 1672 |
| AseI | ATTAAT | 1 cut(s) | 1710 |
| AspS9I | GGNCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| AsuC2I | CCSGG | 2 cut(s) | 552, 990 |
| AsuHPI | GGTGA | 8 cut(s) | 62, 262, 329, 506, 1067, 1514, 1564, 1760 |
| AvaII | GGWCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| BbvI | GCAGC | 2 cut(s) | 391, 876 |
| BccI | CCATC | 4 cut(s) | 476, 541, 1375, 1754 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1241, 1275 |
| BciT130I | CCWGG | 2 cut(s) | 677, 1290 |
| BcnI | CCSGG | 2 cut(s) | 552, 990 |
| BcoDI | GTCTC | 2 cut(s) | 566, 941 |
| BfaI | CTAG | 4 cut(s) | 323, 1337, 1541, 1632 |
| BfmI | CTRYAG | 1 cut(s) | 500 |
| BfrI | CTTAAG | 1 cut(s) | 1679 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 327 |
| BisI | GCNGC | 2 cut(s) | 405, 865 |
| BlpI | GCTNAGC | 1 cut(s) | 1740 |
| BlsI | GCNGC | 2 cut(s) | 406, 866 |
| BmcAI | AGTACT | 2 cut(s) | 1144, 1248 |
| Bme1390I | CCNGG | 4 cut(s) | 552, 677, 990, 1290 |
| Bme18I | GGWCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| BmgT120I | GGNCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| BmiI | GGNNCC | 1 cut(s) | 1360 |
| BmrFI | CCNGG | 4 cut(s) | 552, 677, 990, 1290 |
| BmrI | ACTGGG | 2 cut(s) | 1365, 1582 |
| BmsI | GCATC | 3 cut(s) | 98, 797, 1533 |
| BmuI | ACTGGG | 2 cut(s) | 1365, 1582 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 546, 578 |
| BpmI | CTGGAG | 3 cut(s) | 659, 849, 1272 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1740 |
| BpuEI | CTTGAG | 5 cut(s) | 779, 796, 995, 1379, 1444 |
| BpuMI | CCSGG | 2 cut(s) | 552, 990 |
| BsaJI | CCNNGG | 2 cut(s) | 550, 1289 |
| BsaWI | WCCGGW | 3 cut(s) | 280, 484, 1574 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 262, 292 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 85, 484, 1275 |
| Bse118I | RCCGGY | 2 cut(s) | 317, 1638 |
| Bse1I | ACTGG | 7 cut(s) | 73, 230, 963, 1132, 1207, 1360, 1588 |
| Bse3DI | GCAATG | 1 cut(s) | 148 |
| BseAI | TCCGGA | 2 cut(s) | 280, 484 |
| BseBI | CCWGG | 2 cut(s) | 677, 1290 |
| BseDI | CCNNGG | 2 cut(s) | 550, 1289 |
| BseGI | GGATG | 3 cut(s) | 913, 1583, 1765 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 85, 484, 1275 |
| BseMI | GCAATG | 1 cut(s) | 148 |
| BseMII | CTCAG | 4 cut(s) | 1153, 1270, 1329, 1731 |
| BseNI | ACTGG | 7 cut(s) | 73, 230, 963, 1132, 1207, 1360, 1588 |
| BseRI | GAGGAG | 3 cut(s) | 406, 1291, 1559 |
| BseXI | GCAGC | 2 cut(s) | 391, 876 |
| BsgI | GTGCAG | 1 cut(s) | 1588 |
| BshFI | GGCC | 3 cut(s) | 176, 267, 321 |
| BsiSI | CCGG | 7 cut(s) | 281, 318, 485, 552, 989, 1575, 1639 |
| BslFI | GGGAC | 2 cut(s) | 1102, 1372 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 85, 484, 1275 |
| BsmAI | GTCTC | 2 cut(s) | 566, 941 |
| BsmFI | GGGAC | 2 cut(s) | 1102, 1372 |
| BsnI | GGCC | 3 cut(s) | 176, 267, 321 |
| Bsp13I | TCCGGA | 2 cut(s) | 280, 484 |
| Bsp143I | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1740 |
| BspACI | CCGC | 1 cut(s) | 1787 |
| BspANI | GGCC | 3 cut(s) | 176, 267, 321 |
| BspCNI | CTCAG | 4 cut(s) | 1152, 1269, 1328, 1732 |
| BspEI | TCCGGA | 2 cut(s) | 280, 484 |
| BspLI | GGNNCC | 1 cut(s) | 1360 |
| BspPI | GGATC | 2 cut(s) | 197, 813 |
| BspTI | CTTAAG | 1 cut(s) | 1679 |
| BsrDI | GCAATG | 1 cut(s) | 148 |
| BsrFI | RCCGGY | 2 cut(s) | 317, 1638 |
| BsrI | ACTGG | 7 cut(s) | 73, 230, 963, 1132, 1207, 1360, 1588 |
| BssAI | RCCGGY | 2 cut(s) | 317, 1638 |
| BssECI | CCNNGG | 2 cut(s) | 550, 1289 |
| BssMI | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| Bst2UI | CCWGG | 2 cut(s) | 677, 1290 |
| Bst4CI | ACNGT | 7 cut(s) | 157, 448, 724, 821, 935, 1147, 1722 |
| Bst6I | CTCTTC | 2 cut(s) | 193, 486 |
| BstAFI | CTTAAG | 1 cut(s) | 1679 |
| BstC8I | GCNNGC | 5 cut(s) | 319, 328, 841, 1457, 1686 |
| BstDEI | CTNAG | 5 cut(s) | 1139, 1256, 1315, 1409, 1740 |
| BstF5I | GGATG | 3 cut(s) | 913, 1583, 1765 |
| BstKTI | GATC | 5 cut(s) | 205, 412, 808, 1255, 1408 |
| BstMAI | GTCTC | 2 cut(s) | 566, 941 |
| BstMBI | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 323, 327, 1419 |
| BstNI | CCWGG | 2 cut(s) | 677, 1290 |
| BstNSI | RCATGY | 2 cut(s) | 293, 1123 |
| BstSCI | CCNGG | 4 cut(s) | 550, 675, 988, 1288 |
| BstSFI | CTRYAG | 1 cut(s) | 500 |
| BstV1I | GCAGC | 2 cut(s) | 391, 876 |
| BstX2I | RGATCY | 1 cut(s) | 805 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 772 |
| BstYI | RGATCY | 1 cut(s) | 805 |
| BsuRI | GGCC | 3 cut(s) | 176, 267, 321 |
| BtsCI | GGATG | 3 cut(s) | 913, 1583, 1765 |
| BtsI | GCAGTG | 1 cut(s) | 863 |
| BtsIMutI | CAGTG | 6 cut(s) | 162, 863, 950, 1264, 1353, 1718 |
| Cac8I | GCNNGC | 5 cut(s) | 319, 328, 841, 1457, 1686 |
| Cfr10I | RCCGGY | 2 cut(s) | 317, 1638 |
| Cfr13I | GGNCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| Csp6I | GTAC | 5 cut(s) | 40, 1143, 1184, 1233, 1247 |
| CviAII | CATG | 7 cut(s) | 22, 209, 258, 290, 1120, 1363, 1474 |
| CviQI | GTAC | 5 cut(s) | 40, 1143, 1184, 1233, 1247 |
| DdeI | CTNAG | 5 cut(s) | 1139, 1256, 1315, 1409, 1740 |
| DpnI | GATC | 5 cut(s) | 204, 411, 807, 1254, 1407 |
| DpnII | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| Eam1104I | CTCTTC | 2 cut(s) | 193, 486 |
| EarI | CTCTTC | 2 cut(s) | 193, 486 |
| Eco147I | AGGCCT | 1 cut(s) | 267 |
| Eco32I | GATATC | 1 cut(s) | 1175 |
| Eco47I | GGWCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| Eco57I | CTGAAG | 4 cut(s) | 899, 1079, 1644, 1679 |
| EcoRII | CCWGG | 2 cut(s) | 675, 1288 |
| EcoRV | GATATC | 1 cut(s) | 1175 |
| FaeI | CATG | 7 cut(s) | 25, 212, 261, 293, 1123, 1366, 1477 |
| FaqI | GGGAC | 2 cut(s) | 1102, 1372 |
| FatI | CATG | 7 cut(s) | 21, 208, 257, 289, 1119, 1362, 1473 |
| FblI | GTMKAC | 2 cut(s) | 436, 726 |
| Fnu4HI | GCNGC | 2 cut(s) | 405, 865 |
| FokI | GGATG | 3 cut(s) | 920, 1590, 1772 |
| Fsp4HI | GCNGC | 2 cut(s) | 405, 865 |
| FspBI | CTAG | 4 cut(s) | 323, 1337, 1541, 1632 |
| GluI | GCNGC | 2 cut(s) | 405, 865 |
| GsuI | CTGGAG | 3 cut(s) | 659, 849, 1272 |
| HaeIII | GGCC | 3 cut(s) | 176, 267, 321 |
| HapII | CCGG | 7 cut(s) | 281, 318, 485, 552, 989, 1575, 1639 |
| Hin1II | CATG | 7 cut(s) | 25, 212, 261, 293, 1123, 1366, 1477 |
| HincII | GTYRAC | 4 cut(s) | 451, 529, 630, 727 |
| HindII | GTYRAC | 4 cut(s) | 451, 529, 630, 727 |
| HindIII | AAGCTT | 3 cut(s) | 939, 1157, 1682 |
| HinfI | GANTC | 3 cut(s) | 646, 1552, 1732 |
| HpaI | GTTAAC | 1 cut(s) | 630 |
| HpaII | CCGG | 7 cut(s) | 281, 318, 485, 552, 989, 1575, 1639 |
| HphI | GGTGA | 8 cut(s) | 62, 262, 329, 506, 1067, 1514, 1564, 1760 |
| Hpy166II | GTNNAC | 5 cut(s) | 437, 451, 529, 630, 727 |
| Hpy188I | TCNGA | 9 cut(s) | 202, 889, 1114, 1164, 1372, 1444, 1471, 1557, 1731 |
| Hpy188III | TCNNGA | 7 cut(s) | 281, 485, 600, 828, 1012, 1097, 1541 |
| Hpy8I | GTNNAC | 5 cut(s) | 437, 451, 529, 630, 727 |
| Hpy99I | CGWCG | 1 cut(s) | 728 |
| HpyCH4III | ACNGT | 7 cut(s) | 157, 448, 724, 821, 935, 1147, 1722 |
| HpyCH4V | TGCA | 7 cut(s) | 510, 708, 839, 976, 1386, 1524, 1605 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 323, 327, 1419 |
| HpyF3I | CTNAG | 5 cut(s) | 1139, 1256, 1315, 1409, 1740 |
| Hsp92II | CATG | 7 cut(s) | 25, 212, 261, 293, 1123, 1366, 1477 |
| Kpn2I | TCCGGA | 2 cut(s) | 280, 484 |
| KroI | GCCGGC | 1 cut(s) | 317 |
| KroNI | GCCGGC | 1 cut(s) | 319 |
| KspAI | GTTAAC | 1 cut(s) | 630 |
| Kzo9I | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| LmnI | GCTCC | 6 cut(s) | 678, 1099, 1304, 1315, 1452, 1649 |
| Lsp1109I | GCAGC | 2 cut(s) | 391, 876 |
| LweI | GCATC | 3 cut(s) | 98, 797, 1533 |
| MaeI | CTAG | 4 cut(s) | 323, 1337, 1541, 1632 |
| MaeIII | GTNAC | 2 cut(s) | 292, 1623 |
| MalI | GATC | 5 cut(s) | 204, 411, 807, 1254, 1407 |
| MboI | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| MboII | GAAGA | 7 cut(s) | 16, 172, 180, 231, 374, 473, 641 |
| MfeI | CAATTG | 1 cut(s) | 1401 |
| MflI | RGATCY | 1 cut(s) | 805 |
| MmeI | TCCRAC | 2 cut(s) | 336, 394 |
| MroI | TCCGGA | 2 cut(s) | 280, 484 |
| MroNI | GCCGGC | 1 cut(s) | 317 |
| MseI | TTAA | 8 cut(s) | 218, 545, 629, 1191, 1680, 1710, 1778, 1798 |
| MslI | CAYNNNNRTG | 3 cut(s) | 26, 1478, 1610 |
| MspA1I | CMGCKG | 1 cut(s) | 1739 |
| MspCI | CTTAAG | 1 cut(s) | 1679 |
| MspI | CCGG | 7 cut(s) | 281, 318, 485, 552, 989, 1575, 1639 |
| MspR9I | CCNGG | 4 cut(s) | 552, 677, 990, 1290 |
| MunI | CAATTG | 1 cut(s) | 1401 |
| MvaI | CCWGG | 2 cut(s) | 677, 1290 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 323, 327, 1419 |
| NaeI | GCCGGC | 1 cut(s) | 319 |
| NciI | CCSGG | 2 cut(s) | 552, 990 |
| NdeII | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| NgoMIV | GCCGGC | 1 cut(s) | 317 |
| NlaIII | CATG | 7 cut(s) | 25, 212, 261, 293, 1123, 1366, 1477 |
| NlaIV | GGNNCC | 1 cut(s) | 1360 |
| NmeAIII | GCCGAG | 2 cut(s) | 380, 1216 |
| NmuCI | GTSAC | 2 cut(s) | 292, 1623 |
| NspI | RCATGY | 2 cut(s) | 293, 1123 |
| PceI | AGGCCT | 1 cut(s) | 267 |
| PciI | ACATGT | 1 cut(s) | 289 |
| PdiI | GCCGGC | 1 cut(s) | 319 |
| PfeI | GAWTC | 3 cut(s) | 646, 1552, 1732 |
| PfoI | TCCNGGA | 1 cut(s) | 675 |
| PkrI | GCNGC | 2 cut(s) | 406, 866 |
| PscI | ACATGT | 1 cut(s) | 289 |
| PshBI | ATTAAT | 1 cut(s) | 1710 |
| Psp6I | CCWGG | 2 cut(s) | 675, 1288 |
| PspGI | CCWGG | 2 cut(s) | 675, 1288 |
| PspN4I | GGNNCC | 1 cut(s) | 1360 |
| PspPI | GGNCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| PsuI | RGATCY | 1 cut(s) | 805 |
| PvuII | CAGCTG | 1 cut(s) | 1739 |
| RsaI | GTAC | 5 cut(s) | 41, 1144, 1185, 1234, 1248 |
| RsaNI | GTAC | 5 cut(s) | 40, 1143, 1184, 1233, 1247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 26, 1478, 1610 |
| SalI | GTCGAC | 1 cut(s) | 725 |
| SaqAI | TTAA | 8 cut(s) | 218, 545, 629, 1191, 1680, 1710, 1778, 1798 |
| SatI | GCNGC | 2 cut(s) | 405, 865 |
| Sau3AI | GATC | 5 cut(s) | 202, 409, 805, 1252, 1405 |
| Sau96I | GGNCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| ScaI | AGTACT | 2 cut(s) | 1144, 1248 |
| ScrFI | CCNGG | 4 cut(s) | 552, 677, 990, 1290 |
| SfaNI | GCATC | 3 cut(s) | 98, 797, 1533 |
| SfcI | CTRYAG | 1 cut(s) | 500 |
| SinI | GGWCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 26, 1478, 1610 |
| SmlI | CTYRAG | 6 cut(s) | 794, 811, 1010, 1394, 1423, 1679 |
| SmoI | CTYRAG | 6 cut(s) | 794, 811, 1010, 1394, 1423, 1679 |
| SseBI | AGGCCT | 1 cut(s) | 267 |
| SsiI | CCGC | 1 cut(s) | 1787 |
| SspI | AATATT | 2 cut(s) | 1282, 1708 |
| SspMI | CTAG | 4 cut(s) | 323, 1337, 1541, 1632 |
| StuI | AGGCCT | 1 cut(s) | 267 |
| StyD4I | CCNGG | 4 cut(s) | 550, 675, 988, 1288 |
| TaaI | ACNGT | 7 cut(s) | 157, 448, 724, 821, 935, 1147, 1722 |
| TaqI | TCGA | 3 cut(s) | 726, 1251, 1592 |
| TatI | WGTACW | 3 cut(s) | 39, 1142, 1246 |
| TfiI | GAWTC | 3 cut(s) | 646, 1552, 1732 |
| Tru1I | TTAA | 8 cut(s) | 218, 545, 629, 1191, 1680, 1710, 1778, 1798 |
| Tru9I | TTAA | 8 cut(s) | 218, 545, 629, 1191, 1680, 1710, 1778, 1798 |
| TscAI | CASTG | 6 cut(s) | 162, 863, 957, 1264, 1360, 1725 |
| TseFI | GTSAC | 2 cut(s) | 292, 1623 |
| TseI | GCWGC | 2 cut(s) | 404, 864 |
| Tsp45I | GTSAC | 2 cut(s) | 292, 1623 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 6 cut(s) | 162, 863, 957, 1264, 1360, 1725 |
| Vha464I | CTTAAG | 1 cut(s) | 1679 |
| VpaK11BI | GGWCC | 4 cut(s) | 487, 1205, 1359, 1430 |
| VspI | ATTAAT | 1 cut(s) | 1710 |
| XapI | RAATTY | 4 cut(s) | 984, 1059, 1132, 1672 |
| XbaI | TCTAGA | 1 cut(s) | 1540 |
| XceI | RCATGY | 2 cut(s) | 293, 1123 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 683 |
| XmiI | GTMKAC | 2 cut(s) | 436, 726 |
| XspI | CTAG | 4 cut(s) | 323, 1337, 1541, 1632 |
| ZrmI | AGTACT | 2 cut(s) | 1144, 1248 |