Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Forward (+)

8621635 .. 8623077

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGTTACTAATGAGTATAGTTGTTGGCAGACACCACCTCTAGATATCATGGAGAACATTCTACAACGTGTCAATTTAGGAGATCGAATACGGTTAAGAAACTCTTGCAAGCATTGGAAGTCAATTGTTATGCGAAGAGACATCCCCGGGGCTCCGCATGAACTCCCATGGTTACTGCTGCCTCAAGCCCCCAAATGCAGCAACAAGTGCTTGAGCTTTGCCAGCCTCACTGAGAGGAAAGAAGTCAAGTTAAAGCTTCCTAAGGAAGTTCGAGGAAGCTGGATTTTTGGGTCTTCTAAAGGTTGGTTGATCATGGTCAAGGAAAAAGGATTACAGTCTACGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACACAAACTTCCGCCGTTGAGGACAATTCCATCTTTCAAAAAGATTGTAAAAATGAGGCAGTGGAAACGTTTTGGTGCCAACTCTTTCCTTTTTAATGTTTCATTACTTACTTCTCATGATCTTAATTCTTCAGGCCATTTTACGGTAGCCATAATCTTTGAGGATTTTAAGGACCAAAAGACATTAGGTTTATGCAAAATTGGAGACCTAACATGGAGTGTCTTCCAGGTATTTAATAACAACGACCGCCTTGAGCTTGTGGATATACTGTTTTCTCGAGGCATTCTGTATGCTTTAGTCAGTAGTCAAAAGGATGGCTTGGTAGCAGCTACTCGTGTTTTAAACTTTGCAGATCATGGAGTGAAGTTGAAATTGATTCACAACAAGCATGAACACAGGAATGTGATAATTGATGATTTTAATAGTGACTATCCGAGAGTTTCCAATGCAAACTATCGATCAATATTGCTAGAATCCACCAGCAATGAAGTCTTGGTAATCCATCAAATGGTAGATTATGTTTTGTGCAGAGAAGGTGCTGGTGATTTCAATGACATTGAAGAAGACGACGGCAATATTATTGTGGATAATCAGGAAGGCGTTGATCAAGATAATGATGGTGATGAAGGCAATCATGAGAATGATCATGAGGAAGGCAACTTGGAAGCTGATGATCAAGATGGAGGAGAAATTGATGATGTTGAATATGTTATTGATGAAGACGCGCCCGGCTTTAATCCACATGTCACAACAAGGAGTTTTAGAGTATACAAGATTGATCCAAATAATAACAATTTGCTTCCAGTGCAGAACTTGGGGAACCAAGTGTTCTTTTTGGGAAATGGTGGTGGTTCTGTCTCTCTTCCGGCTGGTAATTTCCCAGAAGTAAAAAGGAATTGTATTTATTTTGCAACAAATTTTGTATGGAATGAGGAATTGACTCCTAAAACATATAGGTCTCGTGAGATCGGCATATTCTACTTTGATGGTGAAAGAATTATACGGCCTTTTTCGAGTGTCAAAATATCATTGTCGTATCAAGGCACATGGTTCACTCCAAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

480

Amino Acids

54.57

Weight (kDa)

5.68

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 46	4.4e-07	F-box domain
Beta-prop_KIB1-4	PF03478	73 - 451	2.6e-34	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	883
AccI	GTMKAC	3 cut(s)	338, 349, 1143
AccII	CGCG	1 cut(s)	1100
AciI	CCGC	3 cut(s)	155, 386, 622
AclI	AACGTT	1 cut(s)	442
AclWI	GGATC	1 cut(s)	1148
AcsI	RAATTY	1 cut(s)	1291
AcuI	CTGAAG	1 cut(s)	489
AfiI	CCNNNNNNNGG	3 cut(s)	365, 517, 883
AflIII	ACRYGT	2 cut(s)	67, 1117
AgsI	TTSAA	5 cut(s)	412, 745, 925, 935, 1079
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	6 cut(s)	216, 256, 279, 631, 704, 1043
AluI	AGCT	6 cut(s)	216, 256, 279, 631, 704, 1043
Alw26I	GTCTC	4 cut(s)	132, 573, 1237, 1338
AlwI	GGATC	1 cut(s)	1148
Ama87I	CYCGRG	2 cut(s)	146, 651
AoxI	GGCC	2 cut(s)	508, 1379
ApeKI	GCWGC	3 cut(s)	178, 198, 701
ApoI	RAATTY	1 cut(s)	1291
AspLEI	GCGC	1 cut(s)	1102
AspS9I	GGNCC	1 cut(s)	547
AsuC2I	CCSGG	3 cut(s)	147, 148, 1104
AsuHPI	GGTGA	3 cut(s)	929, 1007, 1376
AvaI	CYCGRG	2 cut(s)	146, 651
AvaII	GGWCC	1 cut(s)	547
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	449
BanII	GRGCYC	2 cut(s)	154, 373
BauI	CACGAG	2 cut(s)	708, 1335
BbsI	GAAGAC	4 cut(s)	285, 589, 945, 1101
BbvI	GCAGC	3 cut(s)	165, 210, 713
BccI	CCATC	6 cut(s)	412, 683, 885, 986, 1049, 1355
BceAI	ACGGC	3 cut(s)	373, 961, 1394
BciT130I	CCWGG	1 cut(s)	602
BclI	TGATCA	4 cut(s)	309, 979, 1018, 1048
BcnI	CCSGG	3 cut(s)	147, 148, 1104
BcoDI	GTCTC	4 cut(s)	132, 573, 1237, 1338
BfaI	CTAG	2 cut(s)	41, 845
BisI	GCNGC	3 cut(s)	179, 199, 702
BlsI	GCNGC	3 cut(s)	180, 200, 703
Bme1390I	CCNGG	4 cut(s)	147, 148, 602, 1104
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	2 cut(s)	146, 651
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	4 cut(s)	153, 370, 451, 1196
BmrFI	CCNGG	4 cut(s)	147, 148, 602, 1104
BpiI	GAAGAC	4 cut(s)	285, 589, 945, 1101
BpuEI	CTTGAG	3 cut(s)	168, 232, 647
BpuMI	CCSGG	3 cut(s)	147, 148, 1104
Bsa29I	ATCGAT	1 cut(s)	832
BsaI	GGTCTC	2 cut(s)	573, 1338
BsaJI	CCNNGG	4 cut(s)	145, 146, 147, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 517, 883
Bse1I	ACTGG	1 cut(s)	1178
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	832
BseDI	CCNNGG	4 cut(s)	145, 146, 147, 167
BseGI	GGATG	2 cut(s)	141, 694
BseLI	CCNNNNNNNGG	3 cut(s)	365, 517, 883
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	1178
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	3 cut(s)	165, 210, 713
BsgI	GTGCAG	2 cut(s)	922, 1202
Bsh1236I	CGCG	1 cut(s)	1100
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	2 cut(s)	510, 1381
BshNI	GGYRCC	1 cut(s)	449
BshVI	ATCGAT	1 cut(s)	832
BsiEI	CGRYCG	1 cut(s)	622
BsiHKCI	CYCGRG	2 cut(s)	146, 651
BsiSI	CCGG	3 cut(s)	147, 1104, 1241
BslI	CCNNNNNNNGG	3 cut(s)	365, 517, 883
BsmAI	GTCTC	4 cut(s)	132, 573, 1237, 1338
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	2 cut(s)	510, 1381
Bso31I	GGTCTC	2 cut(s)	573, 1338
BsoBI	CYCGRG	2 cut(s)	146, 651
Bsp1286I	GDGCHC	2 cut(s)	154, 373
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	3 cut(s)	155, 386, 622
BspANI	GGCC	2 cut(s)	510, 1381
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	1100
BspHI	TCATGA	3 cut(s)	490, 1009, 1021
BspLI	GGNNCC	4 cut(s)	153, 370, 451, 1196
BspPI	GGATC	1 cut(s)	1148
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	2 cut(s)	573, 1338
BsrDI	GCAATG	1 cut(s)	865
BsrI	ACTGG	1 cut(s)	1178
BssECI	CCNNGG	4 cut(s)	145, 146, 147, 167
BssNAI	GTATAC	1 cut(s)	1144
BssSI	CACGAG	2 cut(s)	708, 1335
BssT1I	CCWWGG	1 cut(s)	167
Bst1107I	GTATAC	1 cut(s)	1144
Bst2BI	CACGAG	2 cut(s)	708, 1335
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	4 cut(s)	93, 336, 520, 645
Bst6I	CTCTTC	2 cut(s)	130, 1242
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	110, 223
BstDEI	CTNAG	2 cut(s)	231, 261
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	141, 694
BstFNI	CGCG	1 cut(s)	1100
BstHHI	GCGC	1 cut(s)	1102
BstMAI	GTCTC	4 cut(s)	132, 573, 1237, 1338
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 222, 1180
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	1121
BstSCI	CCNGG	4 cut(s)	145, 146, 600, 1102
BstUI	CGCG	1 cut(s)	1100
BstV1I	GCAGC	3 cut(s)	165, 210, 713
BstV2I	GAAGAC	4 cut(s)	285, 589, 945, 1101
BstZ17I	GTATAC	1 cut(s)	1144
Bsu15I	ATCGAT	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	510, 1381
BsuTUI	ATCGAT	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	141, 694
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	3 cut(s)	228, 440, 1185
Cac8I	GCNNGC	2 cut(s)	110, 223
CciI	TCATGA	3 cut(s)	490, 1009, 1021
CfoI	GCGC	1 cut(s)	1102
Cfr13I	GGNCC	1 cut(s)	547
Cfr9I	CCCGGG	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	832
CseI	GACGC	1 cut(s)	1106
DdeI	CTNAG	2 cut(s)	231, 261
DraI	TTTAAA	1 cut(s)	717
Eam1104I	CTCTTC	2 cut(s)	130, 1242
EarI	CTCTTC	2 cut(s)	130, 1242
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	154, 373
Eco31I	GGTCTC	2 cut(s)	573, 1338
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	489
Eco81I	CCTNAGG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	146, 651
EcoRII	CCWGG	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	154, 373
ErhI	CCWWGG	1 cut(s)	167
FalI	AAGNNNNNCTT	4 cut(s)	88, 120, 677, 709
FbaI	TGATCA	4 cut(s)	309, 979, 1018, 1048
FblI	GTMKAC	3 cut(s)	338, 349, 1143
Fnu4HI	GCNGC	3 cut(s)	179, 199, 702
FokI	GGATG	2 cut(s)	128, 701
FriOI	GRGCYC	2 cut(s)	154, 373
Fsp4HI	GCNGC	3 cut(s)	179, 199, 702
FspBI	CTAG	2 cut(s)	41, 845
GlaI	GCGC	1 cut(s)	1101
GluI	GCNGC	3 cut(s)	179, 199, 702
HaeIII	GGCC	2 cut(s)	510, 1381
HapII	CCGG	3 cut(s)	147, 1104, 1241
HgaI	GACGC	1 cut(s)	1106
HhaI	GCGC	1 cut(s)	1102
Hin6I	GCGC	1 cut(s)	1100
HinP1I	GCGC	1 cut(s)	1100
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	3 cut(s)	751, 848, 1315
HpaII	CCGG	3 cut(s)	147, 1104, 1241
HphI	GGTGA	3 cut(s)	929, 1007, 1376
Hpy166II	GTNNAC	4 cut(s)	339, 350, 1144, 1428
Hpy188I	TCNGA	1 cut(s)	810
Hpy8I	GTNNAC	4 cut(s)	339, 350, 1144, 1428
Hpy99I	CGWCG	1 cut(s)	947
HpyAV	CCTTC	4 cut(s)	902, 965, 995, 1022
HpyCH4III	ACNGT	4 cut(s)	93, 336, 520, 645
HpyCH4IV	ACGT	2 cut(s)	67, 442
HpyCH4V	TGCA	8 cut(s)	108, 198, 570, 725, 824, 903, 1183, 1286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 222, 1180
HpyF3I	CTNAG	2 cut(s)	231, 261
HpySE526I	ACGT	2 cut(s)	67, 442
HspAI	GCGC	1 cut(s)	1100
Ksp22I	TGATCA	4 cut(s)	309, 979, 1018, 1048
LmnI	GCTCC	2 cut(s)	157, 368
Lsp1109I	GCAGC	3 cut(s)	165, 210, 713
MaeI	CTAG	2 cut(s)	41, 845
MaeII	ACGT	2 cut(s)	67, 442
MaeIII	GTNAC	4 cut(s)	4, 171, 800, 1120
MboII	GAAGA	8 cut(s)	147, 285, 495, 589, 947, 950, 1106, 1229
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	154, 373
MlyI	GAGTC	1 cut(s)	1309
MslI	CAYNNNNRTG	2 cut(s)	774, 1014
MspI	CCGG	3 cut(s)	147, 1104, 1241
MspR9I	CCNGG	4 cut(s)	147, 148, 602, 1104
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	3 cut(s)	207, 222, 1180
NciI	CCSGG	3 cut(s)	147, 148, 1104
NcoI	CCATGG	1 cut(s)	167
NlaIV	GGNNCC	4 cut(s)	153, 370, 451, 1196
NmuCI	GTSAC	2 cut(s)	800, 1120
NspI	RCATGY	1 cut(s)	1121
PaeR7I	CTCGAG	1 cut(s)	651
PagI	TCATGA	3 cut(s)	490, 1009, 1021
PciI	ACATGT	1 cut(s)	1117
PctI	GAATGC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	751, 848
PflMI	CCANNNNNTGG	1 cut(s)	883
PkrI	GCNGC	3 cut(s)	180, 200, 703
PleI	GAGTC	1 cut(s)	1309
PpsI	GAGTC	1 cut(s)	1309
PscI	ACATGT	1 cut(s)	1117
Psp1406I	AACGTT	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	153, 370, 451, 1196
PspPI	GGNCC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	774, 1014
SatI	GCNGC	3 cut(s)	179, 199, 702
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	1309
ScrFI	CCNGG	4 cut(s)	147, 148, 602, 1104
SduI	GDGCHC	2 cut(s)	154, 373
Sfr274I	CTCGAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	651
SmaI	CCCGGG	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	774, 1014
SmlI	CTYRAG	4 cut(s)	183, 211, 626, 651
SmoI	CTYRAG	4 cut(s)	183, 211, 626, 651
SsiI	CCGC	3 cut(s)	155, 386, 622
SspI	AATATT	2 cut(s)	840, 952
SspMI	CTAG	2 cut(s)	41, 845
StyD4I	CCNGG	4 cut(s)	145, 146, 600, 1102
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	4 cut(s)	93, 336, 520, 645
TaiI	ACGT	2 cut(s)	70, 445
TaqI	TCGA	5 cut(s)	85, 271, 652, 832, 1388
TfiI	GAWTC	2 cut(s)	751, 848
TscAI	CASTG	3 cut(s)	235, 440, 1185
TseFI	GTSAC	2 cut(s)	800, 1120
TseI	GCWGC	3 cut(s)	178, 198, 701
Tsp45I	GTSAC	2 cut(s)	800, 1120
TspDTI	ATGAA	6 cut(s)	174, 465, 780, 876, 1014, 1107
TspMI	CCCGGG	1 cut(s)	146
TspRI	CASTG	3 cut(s)	235, 440, 1185
Van91I	CCANNNNNTGG	1 cut(s)	883
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	1291
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	1121
XhoI	CTCGAG	1 cut(s)	651
XmaI	CCCGGG	1 cut(s)	146
XmiI	GTMKAC	3 cut(s)	338, 349, 1143
XspI	CTAG	2 cut(s)	41, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.