Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

27075012 .. 27077332

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0257700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGATTTCAATCTAGTTGGGAACTTGCAGCTGTCTAACAAAGAAGTAACAGAAAGAGAACCTGTCGGAGTAAGTGAGCAGGGAAAAATTCTTAAAGATGTCAGTGTACAAGTGAGTCCTTCCAGCTCAACTGAGAAGACAAGACTACCTAGTATTCAGAGTATAAATCCTAAGCTCAGTCTCCCAAGTGTGCAGCTACTGAGTAACTCAAAGAAAACCATCTCTACCCGGAAAGTTTCCAACTGTAGACTTCGTAGACCTTGTATGGTGAATGTCATGGAACTTGAAATTCCTTCAGCAAAGGAAACTGATGGAAATGCTGAAAAGGCTGAAGCATATACCAAGGCGCTTAAAGCATTACCAGCTGCTGCTGCCACAACACAAAAAATCTATGAACTCAATGAGCGTGTTGTGGCAGCAGCAGCTGGTAATGCTGCTATATGTCAGGATTTGTTATGGACGGTACAAAATGAAGTGGAGATTGAGGATAATATATACACTGTGAAAGCAGCATGTGAGAGGTATATTGATGAGTGGAAGAGAAAGAAGAAAGAGGAAAATAAGGATGAACATTTCCCTTCAACTATTGGGCTCTATAGTTGGGAAGGGCAGCAGGCTGTTATAATATTTGTTGGATTCCGCAACCAAATGGCAACAGAGTTGGGAAGAGTCATGGCATGTGGGGCTGGTAGTAGCTGGGCTGAAAACTATCTGGGTTCACAGACGTGGAGAGATGATTTTACCAAGTTTGATTTTGTTCACCTTGTCAGGCAATCAGTCACACTTTCCAGTTTGCATAGTCCTTCTACGGGTGGTAGGATTACAGTGCTAAGATTGTCTCGTCGAGGGGACTGGGAAATATTTCCCATGCATGATCATGTAATCAAATGCTTGGGTGACTATCAGCAGCAACTGGAAACTTTCTGGCATCCCGAAGTTAGTGGTTTGAAGAATATGCTTTTATTGGTAATCAGAAATCTGGAGTACAACATTGAGAATGAGAAGAGAGTTAGATTTGAAGTTTGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

343

Amino Acids

38.87

Weight (kDa)

7.02

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AccI	GTMKAC	2 cut(s)	247, 256
AciI	CCGC	1 cut(s)	640
AcsI	RAATTY	2 cut(s)	87, 288
AcuI	CTGAAG	2 cut(s)	279, 351
AfaI	GTAC	3 cut(s)	108, 465, 986
AfiI	CCNNNNNNNGG	1 cut(s)	809
AgsI	TTSAA	5 cut(s)	10, 287, 582, 949, 1019
AjiI	CACGTC	1 cut(s)	726
AleI	CACNNNNGTG	1 cut(s)	724
AluBI	AGCT	7 cut(s)	31, 126, 175, 196, 365, 425, 696
AluI	AGCT	7 cut(s)	31, 126, 175, 196, 365, 425, 696
Alw26I	GTCTC	2 cut(s)	185, 843
AlwNI	CAGNNNCTG	4 cut(s)	199, 368, 425, 913
ApoI	RAATTY	2 cut(s)	87, 288
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	280, 752, 908
BanII	GRGCYC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	143
BccI	CCATC	2 cut(s)	227, 305
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	185, 843
BfaI	CTAG	3 cut(s)	14, 150, 1030
BfmI	CTRYAG	2 cut(s)	244, 595
BfoI	RGCGCY	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	726
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	862
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	1001
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse1I	ACTGG	3 cut(s)	789, 857, 918
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	571, 928
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMII	CTCAG	3 cut(s)	123, 190, 191
BseNI	ACTGG	3 cut(s)	789, 857, 918
BseYI	CCCAGC	1 cut(s)	696
BsgI	GTGCAG	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	2 cut(s)	185, 843
BsmFI	GGGAC	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	874
BspACI	CCGC	1 cut(s)	640
BspCNI	CTCAG	3 cut(s)	124, 189, 192
BsrGI	TGTACA	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	789, 857, 918
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	874
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	245, 463, 502, 826
Bst6I	CTCTTC	3 cut(s)	533, 661, 998
BstAUI	TGTACA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	5 cut(s)	132, 171, 176, 200, 830
BstF5I	GGATG	2 cut(s)	571, 928
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	877
BstMAI	GTCTC	2 cut(s)	185, 843
BstMBI	GATC	1 cut(s)	874
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 353, 362, 371, 422, 431, 683
BstNSI	RCATGY	2 cut(s)	516, 681
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	244, 595
BstV2I	GAAGAC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	2 cut(s)	571, 928
BtsIMutI	CAGTG	3 cut(s)	109, 498, 831
Cac8I	GCNNGC	1 cut(s)	615
CaiI	CAGNNNCTG	4 cut(s)	199, 368, 425, 913
CfoI	GCGC	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	107, 464, 985
CviAII	CATG	7 cut(s)	277, 513, 673, 678, 868, 872, 878
CviQI	GTAC	3 cut(s)	107, 464, 985
DdeI	CTNAG	5 cut(s)	132, 171, 176, 200, 830
DpnI	GATC	1 cut(s)	876
DpnII	GATC	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	533, 661, 998
EarI	CTCTTC	3 cut(s)	533, 661, 998
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	594
Eco57I	CTGAAG	2 cut(s)	279, 351
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	7 cut(s)	280, 516, 676, 681, 871, 875, 881
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	7 cut(s)	276, 512, 672, 677, 867, 871, 877
FbaI	TGATCA	1 cut(s)	874
FblI	GTMKAC	2 cut(s)	247, 256
FokI	GGATG	2 cut(s)	578, 915
FriOI	GRGCYC	1 cut(s)	594
FspBI	CTAG	3 cut(s)	14, 150, 1030
GlaI	GCGC	1 cut(s)	348
GsaI	CCCAGC	1 cut(s)	700
GsuI	CTGGAG	1 cut(s)	1001
HaeII	RGCGCY	1 cut(s)	350
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	7 cut(s)	280, 516, 676, 681, 871, 875, 881
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	3 cut(s)	115, 636, 669
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	3 cut(s)	280, 752, 908
Hpy166II	GTNNAC	5 cut(s)	107, 248, 257, 719, 760
Hpy188I	TCNGA	3 cut(s)	68, 159, 974
Hpy188III	TCNNGA	3 cut(s)	446, 932, 980
Hpy8I	GTNNAC	5 cut(s)	107, 248, 257, 719, 760
Hpy99I	CGWCG	1 cut(s)	846
HpyAV	CCTTC	5 cut(s)	129, 303, 588, 599, 813
HpyCH4III	ACNGT	4 cut(s)	245, 463, 502, 826
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	4 cut(s)	28, 193, 796, 871
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 353, 362, 371, 422, 431, 683
HpyF3I	CTNAG	5 cut(s)	132, 171, 176, 200, 830
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	7 cut(s)	280, 516, 676, 681, 871, 875, 881
HspAI	GCGC	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	1 cut(s)	874
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	3 cut(s)	14, 150, 1030
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	4 cut(s)	46, 203, 778, 896
MalI	GATC	1 cut(s)	876
MboI	GATC	1 cut(s)	874
MboII	GAAGA	6 cut(s)	148, 550, 559, 678, 961, 1015
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	2 cut(s)	87, 288
MlyI	GAGTC	2 cut(s)	124, 678
MmeI	TCCRAC	3 cut(s)	46, 264, 613
MnlI	CCTC	4 cut(s)	478, 513, 547, 839
Mph1103I	ATGCAT	1 cut(s)	873
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	2 cut(s)	93, 351
MslI	CAYNNNNRTG	2 cut(s)	724, 876
MspA1I	CMGCKG	3 cut(s)	31, 365, 425
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	7 cut(s)	326, 353, 362, 371, 422, 431, 683
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	874
NlaIII	CATG	7 cut(s)	280, 516, 676, 681, 871, 875, 881
NmuCI	GTSAC	2 cut(s)	778, 896
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	2 cut(s)	516, 681
OliI	CACNNNNGTG	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	1 cut(s)	636
PleI	GAGTC	2 cut(s)	123, 677
PpsI	GAGTC	2 cut(s)	123, 677
PsiI	TTATAA	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	696
PstNI	CAGNNNCTG	4 cut(s)	199, 368, 425, 913
PvuII	CAGCTG	3 cut(s)	31, 365, 425
RsaI	GTAC	3 cut(s)	108, 465, 986
RsaNI	GTAC	3 cut(s)	107, 464, 985
RseI	CAYNNNNRTG	2 cut(s)	724, 876
SaqAI	TTAA	2 cut(s)	93, 351
Sau3AI	GATC	1 cut(s)	874
SchI	GAGTC	2 cut(s)	124, 678
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	937
SfcI	CTRYAG	2 cut(s)	244, 595
SmiMI	CAYNNNNRTG	2 cut(s)	724, 876
Sse9I	AATT	2 cut(s)	87, 288
SsiI	CCGC	1 cut(s)	640
SspI	AATATT	2 cut(s)	627, 861
SspMI	CTAG	3 cut(s)	14, 150, 1030
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	245, 463, 502, 826
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	1 cut(s)	844
TasI	AATT	2 cut(s)	87, 288
TatI	WGTACW	2 cut(s)	106, 984
TfiI	GAWTC	1 cut(s)	636
Tru1I	TTAA	2 cut(s)	93, 351
Tru9I	TTAA	2 cut(s)	93, 351
TscAI	CASTG	3 cut(s)	109, 505, 831
TseFI	GTSAC	2 cut(s)	778, 896
Tsp45I	GTSAC	2 cut(s)	778, 896
TspDTI	ATGAA	3 cut(s)	408, 486, 582
TspRI	CASTG	3 cut(s)	109, 505, 831
XapI	RAATTY	2 cut(s)	87, 288
XceI	RCATGY	2 cut(s)	516, 681
XmiI	GTMKAC	2 cut(s)	247, 256
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	3 cut(s)	14, 150, 1030
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.