Rorug02G0185600

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000224
Physical Location & Seq
Forward (+)
17276588 .. 17277962
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0185600.1

Sequence Viewer

Length: 300 bp
ATGGCTTGGCGCGGTGGATCGTCCCTGTCGAGATCTCTGATCTCCGCCGCAAGAACCTCCACCGCCCGATCACCTCCGTCGATCTCATCCCTCCCTCGCTCTCCTCCGCTCCGTAATATGGCCTCCGCCACTCGCCGGACTCTCTTCTCTCTCCCCGCCAATGTGGGACAGCTGGCCTGCGCTCAGTCGCTGCTGCCGTTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGCGCGCGCTTTCTGCGAGTTGTCTCAGGGTACCTCCATTGATCCCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

99

Amino Acids

10.37

Weight (kDa)

11.82

Isoelectric Point (pI)

79.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 3 cut(s) 12, 253, 255
AciI CCGC 7 cut(s) 12, 45, 48, 63, 107, 126, 156
AclWI GGATC 2 cut(s) 25, 284
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 118, 135
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 25, 284
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 2 cut(s) 120, 174
ApeKI GCWGC 2 cut(s) 190, 193
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 6 cut(s) 12, 182, 209, 253, 255, 257
AsuHPI GGTGA 1 cut(s) 63
BanI GGYRCC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 177, 180
BceAI ACGGC 2 cut(s) 181, 194
BcoDI GTCTC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 210
BglII AGATCT 1 cut(s) 32
BisI GCNGC 3 cut(s) 48, 191, 194
BlsI GCNGC 3 cut(s) 49, 192, 195
BmiI GGNNCC 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 135
Bse1I ACTGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 118, 135
BseMII CTCAG 2 cut(s) 197, 287
BseNI ACTGG 1 cut(s) 231
BsePI GCGCGC 2 cut(s) 251, 253
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 177, 180
Bsh1236I CGCG 3 cut(s) 12, 253, 255
BshFI GGCC 2 cut(s) 122, 176
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 2 cut(s) 136, 243
BslFI GGGAC 2 cut(s) 7, 180
BslI CCNNNNNNNGG 2 cut(s) 118, 135
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 7, 180
BsnI GGCC 2 cut(s) 122, 176
Bsp143I GATC 6 cut(s) 17, 32, 39, 68, 81, 289
BspACI CCGC 7 cut(s) 12, 45, 48, 63, 107, 126, 156
BspANI GGCC 2 cut(s) 122, 176
BspCNI CTCAG 2 cut(s) 196, 286
BspFNI CGCG 3 cut(s) 12, 253, 255
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 2 cut(s) 25, 284
BspT107I GGYRCC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 231
BssHII GCGCGC 2 cut(s) 251, 253
BssMI GATC 6 cut(s) 17, 32, 39, 68, 81, 289
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 174, 178, 253, 255
BstDEI CTNAG 2 cut(s) 183, 273
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 3 cut(s) 12, 253, 255
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 6 cut(s) 12, 182, 209, 253, 255, 257
BstKTI GATC 6 cut(s) 20, 35, 42, 71, 84, 292
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 6 cut(s) 17, 32, 39, 68, 81, 289
BstMWI GCNNNNNNNGC 2 cut(s) 252, 261
BstUI CGCG 3 cut(s) 12, 253, 255
BstV1I GCAGC 2 cut(s) 177, 180
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 2 cut(s) 122, 176
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 4 cut(s) 174, 178, 253, 255
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 6 cut(s) 12, 182, 209, 253, 255, 257
Csp6I GTAC 1 cut(s) 279
CviJI RGCY 4 cut(s) 5, 122, 172, 176
CviKI_1 RGCY 4 cut(s) 5, 122, 172, 176
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 183, 273
DpnI GATC 6 cut(s) 19, 34, 41, 70, 83, 291
DpnII GATC 6 cut(s) 17, 32, 39, 68, 81, 289
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 2 cut(s) 34, 115
FaiI YATR 2 cut(s) 119, 227
FaqI GGGAC 2 cut(s) 7, 180
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 48, 191, 194
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 48, 191, 194
GlaI GCGC 6 cut(s) 11, 181, 208, 252, 254, 256
GluI GCNGC 3 cut(s) 48, 191, 194
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 122, 176
HapII CCGG 2 cut(s) 136, 243
HhaI GCGC 6 cut(s) 12, 182, 209, 253, 255, 257
Hin6I GCGC 6 cut(s) 10, 180, 207, 251, 253, 255
HinP1I GCGC 6 cut(s) 10, 180, 207, 251, 253, 255
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 136, 243
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 82, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 261
HpyF3I CTNAG 2 cut(s) 183, 273
HspAI GCGC 6 cut(s) 10, 180, 207, 251, 253, 255
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 6 cut(s) 17, 32, 39, 68, 81, 289
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 38, 149, 158, 190, 244, 256, 260
Lsp1109I GCAGC 2 cut(s) 177, 180
MaeIII GTNAC 1 cut(s) 233
MalI GATC 6 cut(s) 19, 34, 41, 70, 83, 291
MbiI CCGCTC 1 cut(s) 109
MboI GATC 6 cut(s) 17, 32, 39, 68, 81, 289
MboII GAAGA 1 cut(s) 136
MflI RGATCY 1 cut(s) 32
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 8 cut(s) 67, 84, 101, 105, 114, 133, 226, 292
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 2 cut(s) 136, 243
MvnI CGCG 3 cut(s) 12, 253, 255
MwoI GCNNNNNNNGC 2 cut(s) 252, 261
NdeII GATC 6 cut(s) 17, 32, 39, 68, 81, 289
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 233
PauI GCGCGC 2 cut(s) 251, 253
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 194
PkrI GCNGC 3 cut(s) 49, 192, 195
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 32
PteI GCGCGC 2 cut(s) 251, 253
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SatI GCNGC 3 cut(s) 48, 191, 194
Sau3AI GATC 6 cut(s) 17, 32, 39, 68, 81, 289
SchI GAGTC 1 cut(s) 133
SetI ASST 4 cut(s) 59, 76, 174, 284
SsiI CCGC 7 cut(s) 12, 45, 48, 63, 107, 126, 156
TaqI TCGA 2 cut(s) 29, 80
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 190, 193
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 3 cut(s) 66, 101, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.