Rorug02G0048900

Tubulin--tyrosine ligase-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
3780036 .. 3787108
7073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0048900.1

Sequence Viewer

Length: 381 bp
ATGGAAGACGAACCACAGCCTGAAATCATCAAAGAGGAACCACACCCGGCTGGACACTCTATGAATCATATTGGTGACAAAAATTCACAGGTTGCTGGAGACTATTCGACTCAAGTGATTCAAGAAAAACCACAGGTTGTTGGAGACTTTTCGACTGAAAATGCCAAAAAGATGCTTTGTTATTGCATGGTATGCGGGAAGAATACTGATCATGGCACTTTCGATTGCCCCTTCAAAGAAACGGGATTTGTATGGTACAAAGGAGTTTATATGCCCAATTTTTGTGATCTTTGTAATAAGATAGGTCACGTGGGTGAATTATGCCCTTTTGACTCTGGCTCTGATCTTGATTATGATCCTCCGGGACCGGAGATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.13

Weight (kDa)

4.55

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 82
AcvI CACGTG 1 cut(s) 310
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 122, 235
AleI CACNNNNGTG 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 93, 138
AlwI GGATC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 47, 363
AsuHPI GGTGA 2 cut(s) 86, 326
AvaII GGWCC 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 12
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 47, 363
BcoDI GTCTC 2 cut(s) 93, 138
Bme1390I CCNGG 2 cut(s) 47, 363
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 39, 366
BmrFI CCNGG 2 cut(s) 47, 363
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 47, 363
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 354
BsiSI CCGG 3 cut(s) 47, 362, 368
BsmAI GTCTC 2 cut(s) 93, 138
Bsp143I GATC 4 cut(s) 208, 286, 343, 355
BspACI CCGC 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 39, 366
BspPI GGATC 1 cut(s) 350
BssMI GATC 4 cut(s) 208, 286, 343, 355
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 310
BstKTI GATC 4 cut(s) 211, 289, 346, 358
BstMAI GTCTC 2 cut(s) 93, 138
BstMBI GATC 4 cut(s) 208, 286, 343, 355
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 45, 361
BstV2I GAAGAC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 187, 212
CviJI RGCY 3 cut(s) 19, 50, 339
CviKI_1 RGCY 3 cut(s) 19, 50, 339
CviQI GTAC 1 cut(s) 256
DpnI GATC 4 cut(s) 210, 288, 345, 357
DpnII GATC 4 cut(s) 208, 286, 343, 355
Eco47I GGWCC 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 310
FaeI CATG 2 cut(s) 190, 215
FatI CATG 2 cut(s) 186, 211
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 117
HapII CCGG 3 cut(s) 47, 362, 368
Hin1II CATG 2 cut(s) 190, 215
HinfI GANTC 4 cut(s) 64, 109, 118, 332
HpaII CCGG 3 cut(s) 47, 362, 368
HphI GGTGA 2 cut(s) 86, 326
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 122, 347
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 190, 215
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 208, 286, 343, 355
LpnPI CCDG 8 cut(s) 33, 36, 60, 74, 81, 119, 321, 375
LweI GCATC 1 cut(s) 162
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 74, 305
MalI GATC 4 cut(s) 210, 288, 345, 357
MboI GATC 4 cut(s) 208, 286, 343, 355
MboII GAAGA 2 cut(s) 17, 211
MluCI AATT 3 cut(s) 82, 277, 317
MlyI GAGTC 2 cut(s) 103, 326
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 28, 369
MslI CAYNNNNRTG 2 cut(s) 72, 312
MspI CCGG 3 cut(s) 47, 362, 368
MspR9I CCNGG 2 cut(s) 47, 363
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 2 cut(s) 47, 363
NdeII GATC 4 cut(s) 208, 286, 343, 355
NlaIII CATG 2 cut(s) 190, 215
NlaIV GGNNCC 2 cut(s) 39, 366
NmuCI GTSAC 2 cut(s) 74, 305
OliI CACNNNNGTG 1 cut(s) 312
PfeI GAWTC 2 cut(s) 64, 118
PfoI TCCNGGA 1 cut(s) 361
PleI GAGTC 2 cut(s) 103, 326
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
PpsI GAGTC 2 cut(s) 103, 326
Ppu21I YACGTR 1 cut(s) 310
PspCI CACGTG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 39, 366
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 72, 312
Sau3AI GATC 4 cut(s) 208, 286, 343, 355
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 2 cut(s) 103, 326
ScrFI CCNGG 2 cut(s) 47, 363
SetI ASST 4 cut(s) 93, 138, 307, 312
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 72, 312
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 3 cut(s) 82, 277, 317
SsiI CCGC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 45, 361
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 107, 152, 222
TasI AATT 3 cut(s) 82, 277, 317
TfiI GAWTC 2 cut(s) 64, 118
TseFI GTSAC 2 cut(s) 74, 305
Tsp45I GTSAC 2 cut(s) 74, 305
TspDTI ATGAA 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.